Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29060

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29055 and AO356_29060 are separated by 252 nucleotidesAO356_29060 and AO356_29065 are separated by 104 nucleotides AO356_29055: AO356_29055 - LysR family transcriptional regulator, at 6,755,807 to 6,756,709 _29055 AO356_29060: AO356_29060 - hypothetical protein, at 6,756,962 to 6,757,696 _29060 AO356_29065: AO356_29065 - hypothetical protein, at 6,757,801 to 6,758,931 _29065 Position (kb) 6756 6757 6758Strain fitness (log2 ratio) -2 -1 0 1at 6755.962 kb on - strand, within AO356_29055at 6756.017 kb on + strand, within AO356_29055at 6756.018 kb on - strand, within AO356_29055at 6756.018 kb on - strand, within AO356_29055at 6756.018 kb on - strand, within AO356_29055at 6756.080 kb on + strand, within AO356_29055at 6756.081 kb on - strand, within AO356_29055at 6756.164 kb on + strand, within AO356_29055at 6756.195 kb on + strand, within AO356_29055at 6756.196 kb on - strand, within AO356_29055at 6756.196 kb on - strand, within AO356_29055at 6756.196 kb on - strand, within AO356_29055at 6756.284 kb on + strand, within AO356_29055at 6756.284 kb on + strand, within AO356_29055at 6756.284 kb on + strand, within AO356_29055at 6756.403 kb on - strand, within AO356_29055at 6756.617 kb on + strand, within AO356_29055at 6756.617 kb on + strand, within AO356_29055at 6756.618 kb on - strand, within AO356_29055at 6756.620 kb on + strandat 6756.621 kb on - strandat 6756.827 kb on + strandat 6756.968 kb on - strandat 6756.984 kb on + strandat 6757.025 kb on + strandat 6757.025 kb on + strandat 6757.025 kb on + strandat 6757.025 kb on + strandat 6757.025 kb on + strandat 6757.026 kb on - strandat 6757.026 kb on - strandat 6757.027 kb on + strandat 6757.028 kb on - strandat 6757.028 kb on - strandat 6757.028 kb on - strandat 6757.030 kb on - strandat 6757.030 kb on - strandat 6757.030 kb on - strandat 6757.083 kb on - strand, within AO356_29060at 6757.136 kb on + strand, within AO356_29060at 6757.137 kb on - strand, within AO356_29060at 6757.137 kb on - strand, within AO356_29060at 6757.187 kb on - strand, within AO356_29060at 6757.220 kb on + strand, within AO356_29060at 6757.220 kb on + strand, within AO356_29060at 6757.299 kb on + strand, within AO356_29060at 6757.299 kb on + strand, within AO356_29060at 6757.299 kb on + strand, within AO356_29060at 6757.475 kb on + strand, within AO356_29060at 6757.506 kb on - strand, within AO356_29060at 6757.522 kb on - strand, within AO356_29060at 6757.530 kb on - strand, within AO356_29060at 6757.806 kb on + strandat 6757.879 kb on + strandat 6757.963 kb on + strand, within AO356_29065at 6757.963 kb on + strand, within AO356_29065at 6757.963 kb on + strand, within AO356_29065at 6757.964 kb on - strand, within AO356_29065at 6757.964 kb on - strand, within AO356_29065at 6757.966 kb on - strand, within AO356_29065at 6758.153 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.279 kb on + strand, within AO356_29065at 6758.280 kb on - strand, within AO356_29065at 6758.280 kb on - strand, within AO356_29065at 6758.280 kb on - strand, within AO356_29065at 6758.280 kb on - strand, within AO356_29065at 6758.280 kb on - strand, within AO356_29065at 6758.283 kb on + strand, within AO356_29065at 6758.283 kb on + strand, within AO356_29065at 6758.283 kb on + strand, within AO356_29065at 6758.284 kb on - strand, within AO356_29065

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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6,755,962 - AO356_29055 0.17 -0.5
6,756,017 + AO356_29055 0.23 -0.5
6,756,018 - AO356_29055 0.23 -1.6
6,756,018 - AO356_29055 0.23 -0.2
6,756,018 - AO356_29055 0.23 -0.5
6,756,080 + AO356_29055 0.30 -0.5
6,756,081 - AO356_29055 0.30 +0.7
6,756,164 + AO356_29055 0.40 -0.8
6,756,195 + AO356_29055 0.43 +0.1
6,756,196 - AO356_29055 0.43 +0.2
6,756,196 - AO356_29055 0.43 +0.5
6,756,196 - AO356_29055 0.43 -0.1
6,756,284 + AO356_29055 0.53 -0.2
6,756,284 + AO356_29055 0.53 +0.5
6,756,284 + AO356_29055 0.53 +0.6
6,756,403 - AO356_29055 0.66 +0.4
6,756,617 + AO356_29055 0.90 -0.6
6,756,617 + AO356_29055 0.90 +0.8
6,756,618 - AO356_29055 0.90 +0.1
6,756,620 + -0.2
6,756,621 - -0.3
6,756,827 + +0.7
6,756,968 - -0.0
6,756,984 + -0.4
6,757,025 + -0.0
6,757,025 + -1.2
6,757,025 + -1.3
6,757,025 + -0.6
6,757,025 + +0.5
6,757,026 - -0.3
6,757,026 - +0.1
6,757,027 + +0.6
6,757,028 - +0.6
6,757,028 - -0.6
6,757,028 - +0.3
6,757,030 - -0.2
6,757,030 - +0.6
6,757,030 - +0.2
6,757,083 - AO356_29060 0.16 +1.3
6,757,136 + AO356_29060 0.24 +0.2
6,757,137 - AO356_29060 0.24 -1.0
6,757,137 - AO356_29060 0.24 +0.3
6,757,187 - AO356_29060 0.31 -0.0
6,757,220 + AO356_29060 0.35 -2.4
6,757,220 + AO356_29060 0.35 -1.1
6,757,299 + AO356_29060 0.46 -1.1
6,757,299 + AO356_29060 0.46 +0.7
6,757,299 + AO356_29060 0.46 -1.7
6,757,475 + AO356_29060 0.70 -0.4
6,757,506 - AO356_29060 0.74 -1.0
6,757,522 - AO356_29060 0.76 -0.6
6,757,530 - AO356_29060 0.77 -0.5
6,757,806 + -0.0
6,757,879 + +0.3
6,757,963 + AO356_29065 0.14 -1.6
6,757,963 + AO356_29065 0.14 -0.5
6,757,963 + AO356_29065 0.14 +0.1
6,757,964 - AO356_29065 0.14 -0.2
6,757,964 - AO356_29065 0.14 +0.7
6,757,966 - AO356_29065 0.15 -0.4
6,758,153 + AO356_29065 0.31 +0.8
6,758,279 + AO356_29065 0.42 +0.3
6,758,279 + AO356_29065 0.42 -0.4
6,758,279 + AO356_29065 0.42 +1.0
6,758,279 + AO356_29065 0.42 +0.8
6,758,279 + AO356_29065 0.42 -0.1
6,758,279 + AO356_29065 0.42 -0.4
6,758,279 + AO356_29065 0.42 +0.5
6,758,280 - AO356_29065 0.42 -0.4
6,758,280 - AO356_29065 0.42 +1.7
6,758,280 - AO356_29065 0.42 -0.0
6,758,280 - AO356_29065 0.42 -0.2
6,758,280 - AO356_29065 0.42 -0.3
6,758,283 + AO356_29065 0.43 -0.8
6,758,283 + AO356_29065 0.43 -0.5
6,758,283 + AO356_29065 0.43 +0.5
6,758,284 - AO356_29065 0.43 +0.1

Or see this region's nucleotide sequence