Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28225

Experiment: Chlorite 0.04 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28220 and AO356_28225 are separated by 385 nucleotidesAO356_28225 and AO356_28230 are separated by 34 nucleotides AO356_28220: AO356_28220 - non-ribosomal peptide synthetase, at 6,495,382 to 6,521,169 _28220 AO356_28225: AO356_28225 - ATP-binding protein, at 6,521,555 to 6,523,255 _28225 AO356_28230: AO356_28230 - syrP protein, at 6,523,290 to 6,524,351 _28230 Position (kb) 6521 6522 6523 6524Strain fitness (log2 ratio) -1 0 1at 6521.057 kb on + strandat 6521.072 kb on + strandat 6521.072 kb on + strandat 6521.169 kb on + strandat 6521.169 kb on + strandat 6521.824 kb on - strand, within AO356_28225at 6521.848 kb on - strand, within AO356_28225at 6522.064 kb on - strand, within AO356_28225at 6522.064 kb on - strand, within AO356_28225at 6522.124 kb on - strand, within AO356_28225at 6522.124 kb on - strand, within AO356_28225at 6522.198 kb on + strand, within AO356_28225at 6522.334 kb on + strand, within AO356_28225at 6522.402 kb on + strand, within AO356_28225at 6522.552 kb on + strand, within AO356_28225at 6522.679 kb on - strand, within AO356_28225at 6522.732 kb on + strand, within AO356_28225at 6522.792 kb on + strand, within AO356_28225at 6522.844 kb on + strand, within AO356_28225at 6522.866 kb on - strand, within AO356_28225at 6523.168 kb on + strandat 6523.168 kb on + strandat 6523.169 kb on - strandat 6523.305 kb on + strandat 6523.912 kb on + strand, within AO356_28230

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
remove
6,521,057 + -0.5
6,521,072 + +0.6
6,521,072 + +0.3
6,521,169 + -0.2
6,521,169 + -1.1
6,521,824 - AO356_28225 0.16 +0.2
6,521,848 - AO356_28225 0.17 +0.8
6,522,064 - AO356_28225 0.30 -0.2
6,522,064 - AO356_28225 0.30 +1.1
6,522,124 - AO356_28225 0.33 +1.3
6,522,124 - AO356_28225 0.33 -1.5
6,522,198 + AO356_28225 0.38 +0.6
6,522,334 + AO356_28225 0.46 -0.7
6,522,402 + AO356_28225 0.50 +0.4
6,522,552 + AO356_28225 0.59 -0.6
6,522,679 - AO356_28225 0.66 -0.7
6,522,732 + AO356_28225 0.69 +0.2
6,522,792 + AO356_28225 0.73 +1.4
6,522,844 + AO356_28225 0.76 -0.7
6,522,866 - AO356_28225 0.77 +1.3
6,523,168 + +0.4
6,523,168 + -0.4
6,523,169 - -0.3
6,523,305 + +0.9
6,523,912 + AO356_28230 0.59 +0.8

Or see this region's nucleotide sequence