Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28080

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28070 and AO356_28075 are separated by 2 nucleotidesAO356_28075 and AO356_28080 are separated by 156 nucleotidesAO356_28080 and AO356_28085 are separated by 27 nucleotides AO356_28070: AO356_28070 - histidine kinase, at 6,409,810 to 6,411,063 _28070 AO356_28075: AO356_28075 - hypothetical protein, at 6,411,066 to 6,411,284 _28075 AO356_28080: AO356_28080 - branched-chain amino acid ABC transporter substrate-binding protein, at 6,411,441 to 6,412,607 _28080 AO356_28085: AO356_28085 - hypothetical protein, at 6,412,635 to 6,413,624 _28085 Position (kb) 6411 6412 6413Strain fitness (log2 ratio) -2 -1 0 1at 6410.658 kb on - strand, within AO356_28070at 6410.658 kb on - strand, within AO356_28070at 6410.777 kb on - strand, within AO356_28070at 6410.924 kb on + strand, within AO356_28070at 6410.924 kb on + strand, within AO356_28070at 6411.324 kb on + strandat 6411.324 kb on + strandat 6411.325 kb on - strandat 6411.325 kb on - strandat 6411.325 kb on - strandat 6411.350 kb on - strandat 6411.353 kb on - strandat 6411.385 kb on + strandat 6411.385 kb on + strandat 6411.386 kb on - strandat 6411.410 kb on + strandat 6411.410 kb on + strandat 6411.459 kb on + strandat 6411.460 kb on - strandat 6411.460 kb on - strandat 6411.988 kb on - strand, within AO356_28080at 6412.120 kb on - strand, within AO356_28080at 6412.165 kb on - strand, within AO356_28080at 6412.251 kb on + strand, within AO356_28080at 6412.452 kb on + strand, within AO356_28080at 6412.474 kb on + strand, within AO356_28080at 6412.474 kb on + strand, within AO356_28080at 6412.573 kb on - strandat 6412.801 kb on + strand, within AO356_28085at 6412.857 kb on + strand, within AO356_28085at 6412.857 kb on + strand, within AO356_28085at 6412.857 kb on + strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.928 kb on - strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.984 kb on - strand, within AO356_28085at 6412.984 kb on - strand, within AO356_28085

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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6,410,658 - AO356_28070 0.68 +1.0
6,410,658 - AO356_28070 0.68 +0.5
6,410,777 - AO356_28070 0.77 +1.2
6,410,924 + AO356_28070 0.89 -1.0
6,410,924 + AO356_28070 0.89 +0.4
6,411,324 + +0.1
6,411,324 + -1.4
6,411,325 - -0.8
6,411,325 - +0.5
6,411,325 - -0.2
6,411,350 - -0.3
6,411,353 - -1.4
6,411,385 + +0.3
6,411,385 + +0.9
6,411,386 - +0.6
6,411,410 + +0.6
6,411,410 + -1.6
6,411,459 + +0.5
6,411,460 - +0.9
6,411,460 - -1.0
6,411,988 - AO356_28080 0.47 -0.3
6,412,120 - AO356_28080 0.58 -0.0
6,412,165 - AO356_28080 0.62 -1.5
6,412,251 + AO356_28080 0.69 -0.7
6,412,452 + AO356_28080 0.87 -0.3
6,412,474 + AO356_28080 0.89 -1.5
6,412,474 + AO356_28080 0.89 +0.6
6,412,573 - -0.5
6,412,801 + AO356_28085 0.17 +0.1
6,412,857 + AO356_28085 0.22 -0.7
6,412,857 + AO356_28085 0.22 -0.3
6,412,857 + AO356_28085 0.22 -0.1
6,412,858 - AO356_28085 0.23 -0.0
6,412,858 - AO356_28085 0.23 +1.3
6,412,858 - AO356_28085 0.23 -0.4
6,412,858 - AO356_28085 0.23 -0.4
6,412,928 - AO356_28085 0.30 -0.1
6,412,983 + AO356_28085 0.35 -0.7
6,412,983 + AO356_28085 0.35 -1.8
6,412,983 + AO356_28085 0.35 +0.7
6,412,983 + AO356_28085 0.35 -2.2
6,412,984 - AO356_28085 0.35 -0.5
6,412,984 - AO356_28085 0.35 +0.6

Or see this region's nucleotide sequence