Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26670

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26665 and AO356_26670 are separated by 163 nucleotidesAO356_26670 and AO356_26675 are separated by 446 nucleotides AO356_26665: AO356_26665 - carbon monoxide dehydrogenase, at 6,068,951 to 6,071,950 _26665 AO356_26670: AO356_26670 - histidine kinase, at 6,072,114 to 6,074,324 _26670 AO356_26675: AO356_26675 - hypothetical protein, at 6,074,771 to 6,075,313 _26675 Position (kb) 6072 6073 6074 6075Strain fitness (log2 ratio) -2 -1 0 1 2at 6071.304 kb on + strand, within AO356_26665at 6071.344 kb on - strand, within AO356_26665at 6071.544 kb on + strand, within AO356_26665at 6071.625 kb on + strand, within AO356_26665at 6071.630 kb on + strand, within AO356_26665at 6071.631 kb on - strand, within AO356_26665at 6071.816 kb on + strandat 6072.181 kb on + strandat 6072.182 kb on - strandat 6072.290 kb on + strandat 6072.388 kb on + strand, within AO356_26670at 6072.486 kb on - strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.561 kb on + strand, within AO356_26670at 6072.562 kb on - strand, within AO356_26670at 6072.565 kb on + strand, within AO356_26670at 6072.566 kb on - strand, within AO356_26670at 6072.645 kb on + strand, within AO356_26670at 6072.746 kb on + strand, within AO356_26670at 6072.817 kb on - strand, within AO356_26670at 6072.908 kb on - strand, within AO356_26670at 6072.961 kb on + strand, within AO356_26670at 6072.962 kb on - strand, within AO356_26670at 6073.072 kb on + strand, within AO356_26670at 6073.073 kb on - strand, within AO356_26670at 6073.211 kb on + strand, within AO356_26670at 6073.212 kb on - strand, within AO356_26670at 6073.249 kb on + strand, within AO356_26670at 6073.250 kb on - strand, within AO356_26670at 6073.751 kb on - strand, within AO356_26670at 6073.907 kb on + strand, within AO356_26670at 6074.107 kb on + strandat 6074.107 kb on + strandat 6074.175 kb on - strandat 6074.229 kb on + strandat 6074.230 kb on - strandat 6074.318 kb on + strandat 6074.318 kb on + strandat 6074.400 kb on - strandat 6074.420 kb on + strandat 6074.421 kb on - strandat 6074.625 kb on + strandat 6074.625 kb on + strandat 6074.628 kb on + strandat 6074.628 kb on + strandat 6074.641 kb on - strandat 6074.668 kb on - strandat 6074.681 kb on - strandat 6074.683 kb on - strandat 6074.866 kb on + strand, within AO356_26675at 6074.866 kb on + strand, within AO356_26675at 6075.096 kb on + strand, within AO356_26675at 6075.097 kb on - strand, within AO356_26675at 6075.121 kb on + strand, within AO356_26675at 6075.122 kb on - strand, within AO356_26675at 6075.122 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.124 kb on - strand, within AO356_26675at 6075.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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6,071,304 + AO356_26665 0.78 +1.0
6,071,344 - AO356_26665 0.80 -0.1
6,071,544 + AO356_26665 0.86 -0.5
6,071,625 + AO356_26665 0.89 +0.1
6,071,630 + AO356_26665 0.89 +0.7
6,071,631 - AO356_26665 0.89 -0.0
6,071,816 + +0.8
6,072,181 + -0.2
6,072,182 - -0.0
6,072,290 + -0.5
6,072,388 + AO356_26670 0.12 -2.3
6,072,486 - AO356_26670 0.17 -0.2
6,072,561 + AO356_26670 0.20 +0.5
6,072,561 + AO356_26670 0.20 -0.9
6,072,561 + AO356_26670 0.20 -0.6
6,072,561 + AO356_26670 0.20 +0.8
6,072,562 - AO356_26670 0.20 -2.0
6,072,565 + AO356_26670 0.20 -0.2
6,072,566 - AO356_26670 0.20 +1.0
6,072,645 + AO356_26670 0.24 +0.1
6,072,746 + AO356_26670 0.29 -0.1
6,072,817 - AO356_26670 0.32 -0.8
6,072,908 - AO356_26670 0.36 +0.0
6,072,961 + AO356_26670 0.38 +0.3
6,072,962 - AO356_26670 0.38 +2.4
6,073,072 + AO356_26670 0.43 -0.6
6,073,073 - AO356_26670 0.43 -0.3
6,073,211 + AO356_26670 0.50 -0.1
6,073,212 - AO356_26670 0.50 +1.4
6,073,249 + AO356_26670 0.51 -0.0
6,073,250 - AO356_26670 0.51 -0.1
6,073,751 - AO356_26670 0.74 -0.3
6,073,907 + AO356_26670 0.81 -1.4
6,074,107 + -0.5
6,074,107 + -0.8
6,074,175 - +0.8
6,074,229 + +0.8
6,074,230 - -0.8
6,074,318 + +0.6
6,074,318 + +0.9
6,074,400 - +0.7
6,074,420 + -0.3
6,074,421 - -0.0
6,074,625 + +0.3
6,074,625 + -0.9
6,074,628 + -0.4
6,074,628 + -0.1
6,074,641 - -0.0
6,074,668 - +0.2
6,074,681 - +0.2
6,074,683 - -0.8
6,074,866 + AO356_26675 0.17 -0.5
6,074,866 + AO356_26675 0.17 +0.8
6,075,096 + AO356_26675 0.60 +0.2
6,075,097 - AO356_26675 0.60 -0.2
6,075,121 + AO356_26675 0.64 +0.6
6,075,122 - AO356_26675 0.65 -0.5
6,075,122 - AO356_26675 0.65 -1.0
6,075,124 - AO356_26675 0.65 -0.1
6,075,124 - AO356_26675 0.65 +0.2
6,075,124 - AO356_26675 0.65 -1.1
6,075,124 - AO356_26675 0.65 -0.2
6,075,294 - +0.5

Or see this region's nucleotide sequence