Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25790

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25785 and AO356_25790 are separated by 3 nucleotidesAO356_25790 and AO356_25795 overlap by 4 nucleotides AO356_25785: AO356_25785 - hypothetical protein, at 5,830,003 to 5,831,412 _25785 AO356_25790: AO356_25790 - hypothetical protein, at 5,831,416 to 5,832,366 _25790 AO356_25795: AO356_25795 - transglutaminase, at 5,832,363 to 5,833,160 _25795 Position (kb) 5831 5832 5833Strain fitness (log2 ratio) -2 -1 0 1 2at 5830.463 kb on - strand, within AO356_25785at 5830.465 kb on + strand, within AO356_25785at 5830.466 kb on - strand, within AO356_25785at 5830.466 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.681 kb on + strand, within AO356_25785at 5830.681 kb on + strand, within AO356_25785at 5830.765 kb on + strand, within AO356_25785at 5830.765 kb on + strand, within AO356_25785at 5830.765 kb on + strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.828 kb on + strand, within AO356_25785at 5830.828 kb on + strand, within AO356_25785at 5830.958 kb on - strand, within AO356_25785at 5830.963 kb on + strand, within AO356_25785at 5830.964 kb on - strand, within AO356_25785at 5830.964 kb on - strand, within AO356_25785at 5830.987 kb on + strand, within AO356_25785at 5830.988 kb on - strand, within AO356_25785at 5830.988 kb on - strand, within AO356_25785at 5831.410 kb on + strandat 5831.410 kb on + strandat 5831.410 kb on + strandat 5831.444 kb on - strandat 5831.671 kb on - strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.677 kb on - strand, within AO356_25790at 5831.894 kb on - strand, within AO356_25790at 5832.349 kb on + strandat 5832.350 kb on - strandat 5832.350 kb on - strandat 5832.393 kb on + strandat 5832.393 kb on + strandat 5832.394 kb on - strandat 5832.394 kb on - strandat 5832.394 kb on - strandat 5832.399 kb on + strandat 5832.399 kb on + strandat 5832.903 kb on + strand, within AO356_25795at 5833.056 kb on + strand, within AO356_25795at 5833.056 kb on + strand, within AO356_25795at 5833.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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5,830,463 - AO356_25785 0.33 -0.8
5,830,465 + AO356_25785 0.33 +1.1
5,830,466 - AO356_25785 0.33 +0.5
5,830,466 - AO356_25785 0.33 -0.1
5,830,508 - AO356_25785 0.36 -0.2
5,830,508 - AO356_25785 0.36 -0.5
5,830,508 - AO356_25785 0.36 +0.8
5,830,508 - AO356_25785 0.36 -0.1
5,830,681 + AO356_25785 0.48 +0.3
5,830,681 + AO356_25785 0.48 +0.4
5,830,765 + AO356_25785 0.54 -0.8
5,830,765 + AO356_25785 0.54 -0.2
5,830,765 + AO356_25785 0.54 -0.1
5,830,766 - AO356_25785 0.54 +0.2
5,830,766 - AO356_25785 0.54 +0.6
5,830,766 - AO356_25785 0.54 -0.7
5,830,766 - AO356_25785 0.54 -0.1
5,830,766 - AO356_25785 0.54 +0.6
5,830,767 + AO356_25785 0.54 +0.3
5,830,767 + AO356_25785 0.54 -0.4
5,830,767 + AO356_25785 0.54 +1.5
5,830,767 + AO356_25785 0.54 +0.1
5,830,767 + AO356_25785 0.54 -0.4
5,830,828 + AO356_25785 0.59 +0.7
5,830,828 + AO356_25785 0.59 -2.0
5,830,958 - AO356_25785 0.68 -0.5
5,830,963 + AO356_25785 0.68 +0.4
5,830,964 - AO356_25785 0.68 -0.0
5,830,964 - AO356_25785 0.68 -0.2
5,830,987 + AO356_25785 0.70 +0.1
5,830,988 - AO356_25785 0.70 -0.3
5,830,988 - AO356_25785 0.70 -0.4
5,831,410 + +0.1
5,831,410 + -0.5
5,831,410 + +1.0
5,831,444 - -0.2
5,831,671 - AO356_25790 0.27 +0.5
5,831,674 + AO356_25790 0.27 +0.3
5,831,674 + AO356_25790 0.27 +1.0
5,831,674 + AO356_25790 0.27 +0.1
5,831,674 + AO356_25790 0.27 -1.1
5,831,674 + AO356_25790 0.27 +1.0
5,831,674 + AO356_25790 0.27 +1.3
5,831,674 + AO356_25790 0.27 +0.8
5,831,674 + AO356_25790 0.27 -0.5
5,831,674 + AO356_25790 0.27 +1.6
5,831,675 - AO356_25790 0.27 +1.3
5,831,675 - AO356_25790 0.27 -0.2
5,831,675 - AO356_25790 0.27 -1.2
5,831,675 - AO356_25790 0.27 +0.6
5,831,675 - AO356_25790 0.27 +1.2
5,831,677 - AO356_25790 0.27 +0.8
5,831,894 - AO356_25790 0.50 -2.7
5,832,349 + -1.4
5,832,350 - -0.5
5,832,350 - +0.4
5,832,393 + +2.6
5,832,393 + -0.6
5,832,394 - +0.1
5,832,394 - +0.8
5,832,394 - -1.2
5,832,399 + -0.3
5,832,399 + +0.6
5,832,903 + AO356_25795 0.68 +1.6
5,833,056 + AO356_25795 0.87 +0.6
5,833,056 + AO356_25795 0.87 -0.1
5,833,158 + +0.4

Or see this region's nucleotide sequence