Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25325

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25315 and AO356_25320 overlap by 29 nucleotidesAO356_25320 and AO356_25325 overlap by 4 nucleotidesAO356_25325 and AO356_25330 are separated by 3 nucleotidesAO356_25330 and AO356_25335 overlap by 4 nucleotides AO356_25315: AO356_25315 - cyclopropane-fatty-acyl-phospholipid synthase, at 5,728,132 to 5,729,394 _25315 AO356_25320: AO356_25320 - hypothetical protein, at 5,729,366 to 5,730,181 _25320 AO356_25325: AO356_25325 - FAD-dependent oxidoreductase, at 5,730,178 to 5,731,425 _25325 AO356_25330: AO356_25330 - short-chain dehydrogenase, at 5,731,429 to 5,732,184 _25330 AO356_25335: AO356_25335 - transcriptional regulator, at 5,732,181 to 5,732,603 _25335 Position (kb) 5730 5731 5732Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5729.425 kb on + strandat 5729.499 kb on + strand, within AO356_25320at 5729.499 kb on + strand, within AO356_25320at 5729.679 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.795 kb on - strand, within AO356_25320at 5729.797 kb on + strand, within AO356_25320at 5729.797 kb on + strand, within AO356_25320at 5730.093 kb on + strand, within AO356_25320at 5730.269 kb on + strandat 5730.269 kb on + strandat 5730.270 kb on - strandat 5730.270 kb on - strandat 5730.333 kb on - strand, within AO356_25325at 5730.333 kb on - strand, within AO356_25325at 5730.452 kb on + strand, within AO356_25325at 5730.453 kb on - strand, within AO356_25325at 5730.453 kb on - strand, within AO356_25325at 5730.494 kb on + strand, within AO356_25325at 5730.494 kb on + strand, within AO356_25325at 5730.783 kb on + strand, within AO356_25325at 5730.783 kb on + strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.784 kb on - strand, within AO356_25325at 5730.785 kb on + strand, within AO356_25325at 5730.786 kb on - strand, within AO356_25325at 5730.930 kb on + strand, within AO356_25325at 5730.930 kb on + strand, within AO356_25325at 5730.931 kb on - strand, within AO356_25325at 5730.941 kb on + strand, within AO356_25325at 5730.941 kb on + strand, within AO356_25325at 5730.942 kb on - strand, within AO356_25325at 5730.942 kb on - strand, within AO356_25325at 5730.983 kb on + strand, within AO356_25325at 5730.984 kb on - strand, within AO356_25325at 5731.139 kb on + strand, within AO356_25325at 5731.140 kb on - strand, within AO356_25325at 5731.140 kb on - strand, within AO356_25325at 5731.140 kb on - strand, within AO356_25325at 5731.185 kb on + strand, within AO356_25325at 5731.236 kb on - strand, within AO356_25325at 5731.250 kb on + strand, within AO356_25325at 5731.250 kb on + strand, within AO356_25325at 5731.251 kb on - strand, within AO356_25325at 5731.251 kb on - strand, within AO356_25325at 5731.376 kb on + strandat 5731.376 kb on + strandat 5731.377 kb on - strandat 5731.507 kb on + strand, within AO356_25330at 5731.508 kb on - strand, within AO356_25330at 5731.573 kb on - strand, within AO356_25330at 5731.823 kb on - strand, within AO356_25330at 5731.823 kb on - strand, within AO356_25330at 5731.922 kb on + strand, within AO356_25330at 5731.922 kb on + strand, within AO356_25330at 5731.922 kb on + strand, within AO356_25330at 5731.923 kb on - strand, within AO356_25330at 5731.923 kb on - strand, within AO356_25330at 5732.239 kb on + strand, within AO356_25335at 5732.240 kb on - strand, within AO356_25335at 5732.278 kb on + strand, within AO356_25335at 5732.377 kb on + strand, within AO356_25335

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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5,729,425 + +0.2
5,729,499 + AO356_25320 0.16 -0.4
5,729,499 + AO356_25320 0.16 -0.4
5,729,679 + AO356_25320 0.38 +0.6
5,729,769 + AO356_25320 0.49 +0.9
5,729,769 + AO356_25320 0.49 +0.4
5,729,769 + AO356_25320 0.49 +1.3
5,729,770 - AO356_25320 0.50 +1.0
5,729,770 - AO356_25320 0.50 -0.1
5,729,770 - AO356_25320 0.50 +0.5
5,729,794 + AO356_25320 0.52 -1.5
5,729,794 + AO356_25320 0.52 -0.5
5,729,794 + AO356_25320 0.52 +0.4
5,729,795 - AO356_25320 0.53 +1.9
5,729,797 + AO356_25320 0.53 +1.0
5,729,797 + AO356_25320 0.53 -0.5
5,730,093 + AO356_25320 0.89 -0.6
5,730,269 + +0.1
5,730,269 + -0.1
5,730,270 - +0.2
5,730,270 - +0.8
5,730,333 - AO356_25325 0.12 -0.6
5,730,333 - AO356_25325 0.12 +0.7
5,730,452 + AO356_25325 0.22 +0.0
5,730,453 - AO356_25325 0.22 -0.1
5,730,453 - AO356_25325 0.22 -0.3
5,730,494 + AO356_25325 0.25 -1.6
5,730,494 + AO356_25325 0.25 -1.3
5,730,783 + AO356_25325 0.48 -0.8
5,730,783 + AO356_25325 0.48 -1.1
5,730,784 - AO356_25325 0.49 -1.6
5,730,784 - AO356_25325 0.49 -1.8
5,730,784 - AO356_25325 0.49 +0.1
5,730,784 - AO356_25325 0.49 -1.0
5,730,784 - AO356_25325 0.49 -0.1
5,730,785 + AO356_25325 0.49 -0.2
5,730,786 - AO356_25325 0.49 -1.1
5,730,930 + AO356_25325 0.60 -0.4
5,730,930 + AO356_25325 0.60 +0.5
5,730,931 - AO356_25325 0.60 -0.5
5,730,941 + AO356_25325 0.61 -0.1
5,730,941 + AO356_25325 0.61 -0.4
5,730,942 - AO356_25325 0.61 +0.8
5,730,942 - AO356_25325 0.61 -0.2
5,730,983 + AO356_25325 0.65 -0.8
5,730,984 - AO356_25325 0.65 -0.6
5,731,139 + AO356_25325 0.77 +0.7
5,731,140 - AO356_25325 0.77 +1.5
5,731,140 - AO356_25325 0.77 -0.1
5,731,140 - AO356_25325 0.77 +0.3
5,731,185 + AO356_25325 0.81 -0.3
5,731,236 - AO356_25325 0.85 -1.3
5,731,250 + AO356_25325 0.86 -0.4
5,731,250 + AO356_25325 0.86 -1.8
5,731,251 - AO356_25325 0.86 -1.5
5,731,251 - AO356_25325 0.86 -0.6
5,731,376 + +1.8
5,731,376 + +0.6
5,731,377 - +0.8
5,731,507 + AO356_25330 0.10 -0.2
5,731,508 - AO356_25330 0.10 -2.0
5,731,573 - AO356_25330 0.19 +0.6
5,731,823 - AO356_25330 0.52 -0.3
5,731,823 - AO356_25330 0.52 +1.2
5,731,922 + AO356_25330 0.65 +0.6
5,731,922 + AO356_25330 0.65 +3.8
5,731,922 + AO356_25330 0.65 -1.9
5,731,923 - AO356_25330 0.65 +0.1
5,731,923 - AO356_25330 0.65 +0.5
5,732,239 + AO356_25335 0.14 +0.7
5,732,240 - AO356_25335 0.14 +1.1
5,732,278 + AO356_25335 0.23 +0.6
5,732,377 + AO356_25335 0.46 +0.1

Or see this region's nucleotide sequence