Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24980

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24975 and AO356_24980 are separated by 257 nucleotidesAO356_24980 and AO356_24985 are separated by 120 nucleotides AO356_24975: AO356_24975 - GntR family transcriptional regulator, at 5,657,656 to 5,659,047 _24975 AO356_24980: AO356_24980 - TonB-dependent receptor, at 5,659,305 to 5,661,446 _24980 AO356_24985: AO356_24985 - 3-oxoacyl-ACP reductase, at 5,661,567 to 5,662,301 _24985 Position (kb) 5659 5660 5661 5662Strain fitness (log2 ratio) -1 0 1at 5658.373 kb on + strand, within AO356_24975at 5658.394 kb on + strand, within AO356_24975at 5658.394 kb on + strand, within AO356_24975at 5658.394 kb on + strand, within AO356_24975at 5658.394 kb on + strand, within AO356_24975at 5658.436 kb on + strand, within AO356_24975at 5658.493 kb on + strand, within AO356_24975at 5658.494 kb on - strand, within AO356_24975at 5658.559 kb on + strand, within AO356_24975at 5658.560 kb on - strand, within AO356_24975at 5658.560 kb on - strand, within AO356_24975at 5658.560 kb on - strand, within AO356_24975at 5658.607 kb on + strand, within AO356_24975at 5658.607 kb on + strand, within AO356_24975at 5658.607 kb on + strand, within AO356_24975at 5658.608 kb on - strand, within AO356_24975at 5658.608 kb on - strand, within AO356_24975at 5658.608 kb on - strand, within AO356_24975at 5658.725 kb on - strand, within AO356_24975at 5658.777 kb on + strand, within AO356_24975at 5658.777 kb on + strand, within AO356_24975at 5658.778 kb on - strand, within AO356_24975at 5658.778 kb on - strand, within AO356_24975at 5658.976 kb on + strandat 5658.976 kb on + strandat 5658.977 kb on - strandat 5658.977 kb on - strandat 5658.977 kb on - strandat 5659.128 kb on + strandat 5659.128 kb on + strandat 5659.290 kb on + strandat 5659.291 kb on - strandat 5659.344 kb on + strandat 5659.435 kb on - strandat 5659.435 kb on - strandat 5659.435 kb on - strandat 5659.464 kb on + strandat 5659.496 kb on + strandat 5659.652 kb on + strand, within AO356_24980at 5659.653 kb on - strand, within AO356_24980at 5659.713 kb on + strand, within AO356_24980at 5659.806 kb on - strand, within AO356_24980at 5659.970 kb on + strand, within AO356_24980at 5659.970 kb on + strand, within AO356_24980at 5660.445 kb on + strand, within AO356_24980at 5660.451 kb on + strand, within AO356_24980at 5660.451 kb on + strand, within AO356_24980at 5660.521 kb on - strand, within AO356_24980at 5660.670 kb on + strand, within AO356_24980at 5660.670 kb on + strand, within AO356_24980at 5660.670 kb on + strand, within AO356_24980at 5660.671 kb on - strand, within AO356_24980at 5660.671 kb on - strand, within AO356_24980at 5660.671 kb on - strand, within AO356_24980at 5660.671 kb on - strand, within AO356_24980at 5660.757 kb on + strand, within AO356_24980at 5660.757 kb on + strand, within AO356_24980at 5660.757 kb on + strand, within AO356_24980at 5660.757 kb on + strand, within AO356_24980at 5660.758 kb on - strand, within AO356_24980at 5660.758 kb on - strand, within AO356_24980at 5660.758 kb on - strand, within AO356_24980at 5660.785 kb on - strand, within AO356_24980at 5660.928 kb on + strand, within AO356_24980at 5661.075 kb on + strand, within AO356_24980at 5661.075 kb on + strand, within AO356_24980at 5661.075 kb on + strand, within AO356_24980at 5661.075 kb on + strand, within AO356_24980at 5661.075 kb on + strand, within AO356_24980at 5661.075 kb on + strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.076 kb on - strand, within AO356_24980at 5661.079 kb on + strand, within AO356_24980at 5661.079 kb on + strand, within AO356_24980at 5661.079 kb on + strand, within AO356_24980at 5661.079 kb on + strand, within AO356_24980at 5661.079 kb on + strand, within AO356_24980at 5661.080 kb on - strand, within AO356_24980at 5661.080 kb on - strand, within AO356_24980at 5661.080 kb on - strand, within AO356_24980at 5661.080 kb on - strand, within AO356_24980at 5661.168 kb on + strand, within AO356_24980at 5661.211 kb on + strand, within AO356_24980at 5661.211 kb on + strand, within AO356_24980at 5661.211 kb on + strand, within AO356_24980at 5661.212 kb on - strand, within AO356_24980at 5661.212 kb on - strand, within AO356_24980at 5661.264 kb on - strandat 5661.276 kb on + strandat 5661.276 kb on + strandat 5661.277 kb on - strandat 5661.300 kb on + strandat 5661.301 kb on - strandat 5661.303 kb on + strandat 5661.303 kb on + strandat 5661.304 kb on - strandat 5661.304 kb on - strandat 5661.304 kb on - strandat 5661.364 kb on - strandat 5661.390 kb on + strandat 5661.390 kb on + strandat 5661.390 kb on + strandat 5661.391 kb on - strandat 5661.391 kb on - strandat 5661.391 kb on - strandat 5661.435 kb on + strandat 5661.576 kb on - strandat 5661.640 kb on + strandat 5661.640 kb on + strandat 5661.953 kb on - strand, within AO356_24985at 5661.953 kb on - strand, within AO356_24985at 5662.214 kb on + strand, within AO356_24985at 5662.214 kb on + strand, within AO356_24985at 5662.215 kb on - strand, within AO356_24985at 5662.215 kb on - strand, within AO356_24985at 5662.216 kb on + strand, within AO356_24985at 5662.217 kb on - strand, within AO356_24985at 5662.217 kb on - strand, within AO356_24985at 5662.217 kb on - strand, within AO356_24985at 5662.217 kb on - strand, within AO356_24985at 5662.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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5,658,373 + AO356_24975 0.52 +0.6
5,658,394 + AO356_24975 0.53 -0.3
5,658,394 + AO356_24975 0.53 +0.1
5,658,394 + AO356_24975 0.53 +0.3
5,658,394 + AO356_24975 0.53 +0.2
5,658,436 + AO356_24975 0.56 -0.8
5,658,493 + AO356_24975 0.60 +0.9
5,658,494 - AO356_24975 0.60 +1.7
5,658,559 + AO356_24975 0.65 +0.2
5,658,560 - AO356_24975 0.65 -0.5
5,658,560 - AO356_24975 0.65 -1.0
5,658,560 - AO356_24975 0.65 +1.1
5,658,607 + AO356_24975 0.68 +0.7
5,658,607 + AO356_24975 0.68 +0.0
5,658,607 + AO356_24975 0.68 +0.5
5,658,608 - AO356_24975 0.68 +0.2
5,658,608 - AO356_24975 0.68 -0.9
5,658,608 - AO356_24975 0.68 +0.4
5,658,725 - AO356_24975 0.77 -1.6
5,658,777 + AO356_24975 0.81 -1.1
5,658,777 + AO356_24975 0.81 +1.5
5,658,778 - AO356_24975 0.81 -1.0
5,658,778 - AO356_24975 0.81 -0.1
5,658,976 + -0.5
5,658,976 + +0.2
5,658,977 - +0.9
5,658,977 - +0.4
5,658,977 - +0.1
5,659,128 + +0.3
5,659,128 + +0.8
5,659,290 + -0.4
5,659,291 - +1.1
5,659,344 + +0.3
5,659,435 - +0.1
5,659,435 - +0.5
5,659,435 - -0.5
5,659,464 + -0.7
5,659,496 + -0.5
5,659,652 + AO356_24980 0.16 +1.6
5,659,653 - AO356_24980 0.16 -1.0
5,659,713 + AO356_24980 0.19 -0.1
5,659,806 - AO356_24980 0.23 -1.2
5,659,970 + AO356_24980 0.31 +0.8
5,659,970 + AO356_24980 0.31 -1.2
5,660,445 + AO356_24980 0.53 +0.2
5,660,451 + AO356_24980 0.54 -0.0
5,660,451 + AO356_24980 0.54 +0.0
5,660,521 - AO356_24980 0.57 -1.2
5,660,670 + AO356_24980 0.64 -0.3
5,660,670 + AO356_24980 0.64 -0.4
5,660,670 + AO356_24980 0.64 -0.5
5,660,671 - AO356_24980 0.64 -0.5
5,660,671 - AO356_24980 0.64 -0.1
5,660,671 - AO356_24980 0.64 +0.0
5,660,671 - AO356_24980 0.64 -0.1
5,660,757 + AO356_24980 0.68 -0.1
5,660,757 + AO356_24980 0.68 -1.2
5,660,757 + AO356_24980 0.68 +0.9
5,660,757 + AO356_24980 0.68 -0.6
5,660,758 - AO356_24980 0.68 +0.1
5,660,758 - AO356_24980 0.68 -0.4
5,660,758 - AO356_24980 0.68 -0.1
5,660,785 - AO356_24980 0.69 +0.4
5,660,928 + AO356_24980 0.76 +0.1
5,661,075 + AO356_24980 0.83 -0.1
5,661,075 + AO356_24980 0.83 +1.4
5,661,075 + AO356_24980 0.83 +1.1
5,661,075 + AO356_24980 0.83 +0.4
5,661,075 + AO356_24980 0.83 +0.1
5,661,075 + AO356_24980 0.83 -0.4
5,661,076 - AO356_24980 0.83 -0.7
5,661,076 - AO356_24980 0.83 -0.2
5,661,076 - AO356_24980 0.83 +0.3
5,661,076 - AO356_24980 0.83 -0.2
5,661,076 - AO356_24980 0.83 -0.2
5,661,076 - AO356_24980 0.83 +0.9
5,661,076 - AO356_24980 0.83 -1.0
5,661,079 + AO356_24980 0.83 +0.1
5,661,079 + AO356_24980 0.83 -0.2
5,661,079 + AO356_24980 0.83 +0.4
5,661,079 + AO356_24980 0.83 -1.6
5,661,079 + AO356_24980 0.83 -1.4
5,661,080 - AO356_24980 0.83 +0.7
5,661,080 - AO356_24980 0.83 -0.3
5,661,080 - AO356_24980 0.83 +1.2
5,661,080 - AO356_24980 0.83 +0.1
5,661,168 + AO356_24980 0.87 +0.9
5,661,211 + AO356_24980 0.89 +0.3
5,661,211 + AO356_24980 0.89 -0.1
5,661,211 + AO356_24980 0.89 +0.1
5,661,212 - AO356_24980 0.89 -0.3
5,661,212 - AO356_24980 0.89 -0.6
5,661,264 - -0.4
5,661,276 + -0.4
5,661,276 + +0.5
5,661,277 - -1.3
5,661,300 + -0.3
5,661,301 - +0.9
5,661,303 + -0.5
5,661,303 + -0.5
5,661,304 - -0.7
5,661,304 - -0.2
5,661,304 - +0.3
5,661,364 - -1.7
5,661,390 + +0.3
5,661,390 + -1.0
5,661,390 + -0.1
5,661,391 - +0.1
5,661,391 - -1.6
5,661,391 - +0.6
5,661,435 + +0.7
5,661,576 - +0.4
5,661,640 + -1.6
5,661,640 + +0.3
5,661,953 - AO356_24985 0.53 +0.9
5,661,953 - AO356_24985 0.53 -0.9
5,662,214 + AO356_24985 0.88 +0.9
5,662,214 + AO356_24985 0.88 +0.6
5,662,215 - AO356_24985 0.88 +0.2
5,662,215 - AO356_24985 0.88 +1.1
5,662,216 + AO356_24985 0.88 -1.4
5,662,217 - AO356_24985 0.88 -0.2
5,662,217 - AO356_24985 0.88 +0.7
5,662,217 - AO356_24985 0.88 +0.0
5,662,217 - AO356_24985 0.88 +0.3
5,662,421 + -0.9

Or see this region's nucleotide sequence