Experiment: Chlorite 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24960 and AO356_24965 are separated by 112 nucleotides AO356_24965 and AO356_24970 are separated by 141 nucleotides AO356_24970 and AO356_24975 are separated by 137 nucleotides
AO356_24960: AO356_24960 - hydroxyproline-2-epimerase, at 5,654,494 to 5,655,426
_24960
AO356_24965: AO356_24965 - GntR family transcriptional regulator, at 5,655,539 to 5,656,210
_24965
AO356_24970: AO356_24970 - MFS transporter, at 5,656,352 to 5,657,518
_24970
AO356_24975: AO356_24975 - GntR family transcriptional regulator, at 5,657,656 to 5,659,047
_24975
Position (kb) 5656
5657
5658 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5655.499 kb on + strand at 5655.500 kb on - strand at 5655.712 kb on - strand, within AO356_24965 at 5655.712 kb on - strand, within AO356_24965 at 5656.203 kb on - strand at 5656.230 kb on + strand at 5656.245 kb on + strand at 5656.245 kb on + strand at 5656.245 kb on + strand at 5656.247 kb on + strand at 5656.248 kb on - strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.378 kb on - strand at 5656.378 kb on - strand at 5656.378 kb on - strand at 5656.518 kb on + strand, within AO356_24970 at 5656.519 kb on - strand, within AO356_24970 at 5656.611 kb on + strand, within AO356_24970 at 5656.611 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.883 kb on + strand, within AO356_24970 at 5656.884 kb on - strand, within AO356_24970 at 5657.165 kb on - strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.167 kb on - strand, within AO356_24970 at 5657.371 kb on - strand, within AO356_24970 at 5657.425 kb on - strand at 5657.425 kb on - strand at 5657.425 kb on - strand at 5657.433 kb on + strand at 5657.434 kb on - strand at 5657.434 kb on - strand at 5657.621 kb on - strand at 5657.824 kb on + strand, within AO356_24975 at 5657.824 kb on + strand, within AO356_24975 at 5657.825 kb on - strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.074 kb on - strand, within AO356_24975 at 5658.256 kb on + strand, within AO356_24975 at 5658.373 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.436 kb on + strand, within AO356_24975 at 5658.493 kb on + strand, within AO356_24975 at 5658.494 kb on - strand, within AO356_24975
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.04 mM remove 5,655,499 + -0.1 5,655,500 - +1.1 5,655,712 - AO356_24965 0.26 +0.1 5,655,712 - AO356_24965 0.26 +1.4 5,656,203 - +0.7 5,656,230 + +0.3 5,656,245 + +0.8 5,656,245 + -0.2 5,656,245 + -0.1 5,656,247 + +0.3 5,656,248 - +0.4 5,656,377 + -0.5 5,656,377 + +0.3 5,656,377 + +1.6 5,656,377 + -0.4 5,656,378 - +0.0 5,656,378 - -0.7 5,656,378 - -0.1 5,656,518 + AO356_24970 0.14 -0.7 5,656,519 - AO356_24970 0.14 +0.0 5,656,611 + AO356_24970 0.22 +0.6 5,656,611 + AO356_24970 0.22 +0.4 5,656,692 + AO356_24970 0.29 +1.2 5,656,692 + AO356_24970 0.29 -0.2 5,656,692 + AO356_24970 0.29 -0.2 5,656,692 + AO356_24970 0.29 +0.7 5,656,693 - AO356_24970 0.29 +0.7 5,656,693 - AO356_24970 0.29 +0.3 5,656,693 - AO356_24970 0.29 +1.3 5,656,847 + AO356_24970 0.42 +0.3 5,656,847 + AO356_24970 0.42 -0.1 5,656,848 - AO356_24970 0.43 +0.5 5,656,848 - AO356_24970 0.43 +0.1 5,656,883 + AO356_24970 0.46 +0.0 5,656,884 - AO356_24970 0.46 -0.6 5,657,165 - AO356_24970 0.70 +1.3 5,657,166 + AO356_24970 0.70 +0.4 5,657,166 + AO356_24970 0.70 -0.9 5,657,166 + AO356_24970 0.70 +1.8 5,657,167 - AO356_24970 0.70 -0.4 5,657,371 - AO356_24970 0.87 +0.0 5,657,425 - -0.6 5,657,425 - -1.4 5,657,425 - +0.6 5,657,433 + +0.6 5,657,434 - +0.6 5,657,434 - -0.0 5,657,621 - -0.3 5,657,824 + AO356_24975 0.12 +0.7 5,657,824 + AO356_24975 0.12 -0.5 5,657,825 - AO356_24975 0.12 -0.3 5,658,073 + AO356_24975 0.30 +0.6 5,658,073 + AO356_24975 0.30 +0.3 5,658,073 + AO356_24975 0.30 -2.1 5,658,074 - AO356_24975 0.30 -0.1 5,658,256 + AO356_24975 0.43 +0.2 5,658,373 + AO356_24975 0.52 +0.6 5,658,394 + AO356_24975 0.53 -0.3 5,658,394 + AO356_24975 0.53 +0.1 5,658,394 + AO356_24975 0.53 +0.3 5,658,394 + AO356_24975 0.53 +0.2 5,658,436 + AO356_24975 0.56 -0.8 5,658,493 + AO356_24975 0.60 +0.9 5,658,494 - AO356_24975 0.60 +1.7
Or see this region's nucleotide sequence