Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22130

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22125 and AO356_22130 are separated by 295 nucleotidesAO356_22130 and AO356_22135 overlap by 2 nucleotides AO356_22125: AO356_22125 - isocitrate dehydrogenase, at 4,952,568 to 4,954,793 _22125 AO356_22130: AO356_22130 - hypothetical protein, at 4,955,089 to 4,955,277 _22130 AO356_22135: AO356_22135 - isocitrate dehydrogenase, at 4,955,276 to 4,956,532 _22135 Position (kb) 4955 4956Strain fitness (log2 ratio) -2 -1 0 1 2at 4954.146 kb on + strand, within AO356_22125at 4954.146 kb on + strand, within AO356_22125at 4954.147 kb on - strand, within AO356_22125at 4954.147 kb on - strand, within AO356_22125at 4954.275 kb on + strand, within AO356_22125at 4954.276 kb on - strand, within AO356_22125at 4954.333 kb on + strand, within AO356_22125at 4954.333 kb on + strand, within AO356_22125at 4954.334 kb on - strand, within AO356_22125at 4954.334 kb on - strand, within AO356_22125at 4954.732 kb on + strandat 4954.732 kb on + strandat 4954.732 kb on + strandat 4954.732 kb on + strandat 4954.733 kb on - strandat 4954.767 kb on - strandat 4954.767 kb on - strandat 4954.768 kb on + strandat 4954.768 kb on + strandat 4954.768 kb on + strandat 4954.768 kb on + strandat 4954.793 kb on + strandat 4954.793 kb on + strandat 4954.793 kb on + strandat 4954.793 kb on + strandat 4954.793 kb on + strandat 4954.818 kb on + strandat 4954.819 kb on - strandat 4954.852 kb on - strandat 4954.964 kb on + strandat 4954.964 kb on + strandat 4954.965 kb on - strandat 4954.965 kb on - strandat 4954.987 kb on + strandat 4954.987 kb on + strandat 4954.987 kb on + strandat 4955.029 kb on + strandat 4955.030 kb on - strandat 4955.030 kb on - strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.031 kb on + strandat 4955.032 kb on - strandat 4955.032 kb on - strandat 4955.032 kb on - strandat 4955.032 kb on - strandat 4955.032 kb on - strandat 4955.032 kb on - strandat 4955.032 kb on - strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.035 kb on + strandat 4955.036 kb on - strandat 4955.036 kb on - strandat 4955.036 kb on - strandat 4955.036 kb on - strandat 4955.036 kb on - strandat 4955.036 kb on - strandat 4955.036 kb on - strandat 4955.039 kb on + strandat 4955.039 kb on + strandat 4955.039 kb on + strandat 4955.040 kb on - strandat 4955.040 kb on - strandat 4955.040 kb on - strandat 4955.040 kb on - strandat 4955.040 kb on - strandat 4955.040 kb on - strandat 4955.040 kb on - strandat 4955.065 kb on - strandat 4955.118 kb on + strand, within AO356_22130at 4955.118 kb on + strand, within AO356_22130at 4955.197 kb on - strand, within AO356_22130at 4955.201 kb on + strand, within AO356_22130at 4955.202 kb on - strand, within AO356_22130at 4955.202 kb on - strand, within AO356_22130at 4955.202 kb on - strand, within AO356_22130at 4955.282 kb on + strandat 4955.344 kb on + strandat 4955.344 kb on + strandat 4955.345 kb on - strandat 4955.345 kb on - strandat 4955.345 kb on - strandat 4955.345 kb on - strandat 4955.345 kb on - strandat 4955.451 kb on - strand, within AO356_22135at 4955.487 kb on - strand, within AO356_22135at 4955.487 kb on - strand, within AO356_22135at 4955.487 kb on - strand, within AO356_22135at 4955.513 kb on + strand, within AO356_22135at 4955.513 kb on + strand, within AO356_22135at 4955.564 kb on + strand, within AO356_22135at 4955.564 kb on + strand, within AO356_22135at 4955.564 kb on + strand, within AO356_22135at 4955.564 kb on + strand, within AO356_22135at 4955.565 kb on - strand, within AO356_22135at 4955.565 kb on - strand, within AO356_22135at 4955.628 kb on + strand, within AO356_22135at 4955.629 kb on - strand, within AO356_22135at 4955.629 kb on - strand, within AO356_22135at 4955.654 kb on + strand, within AO356_22135at 4955.654 kb on + strand, within AO356_22135at 4955.654 kb on + strand, within AO356_22135at 4955.654 kb on + strand, within AO356_22135at 4955.655 kb on - strand, within AO356_22135at 4955.655 kb on - strand, within AO356_22135at 4955.655 kb on - strand, within AO356_22135at 4955.655 kb on - strand, within AO356_22135at 4955.655 kb on - strand, within AO356_22135at 4955.655 kb on - strand, within AO356_22135at 4955.760 kb on - strand, within AO356_22135at 4955.760 kb on - strand, within AO356_22135at 4955.760 kb on - strand, within AO356_22135at 4955.760 kb on - strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.927 kb on + strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.928 kb on - strand, within AO356_22135at 4955.969 kb on - strand, within AO356_22135at 4956.167 kb on + strand, within AO356_22135at 4956.168 kb on - strand, within AO356_22135at 4956.168 kb on - strand, within AO356_22135at 4956.203 kb on + strand, within AO356_22135at 4956.203 kb on + strand, within AO356_22135at 4956.203 kb on + strand, within AO356_22135at 4956.204 kb on - strand, within AO356_22135at 4956.204 kb on - strand, within AO356_22135at 4956.204 kb on - strand, within AO356_22135at 4956.204 kb on - strand, within AO356_22135

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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4,954,146 + AO356_22125 0.71 -1.6
4,954,146 + AO356_22125 0.71 -0.3
4,954,147 - AO356_22125 0.71 -0.2
4,954,147 - AO356_22125 0.71 -0.1
4,954,275 + AO356_22125 0.77 -1.3
4,954,276 - AO356_22125 0.77 -0.6
4,954,333 + AO356_22125 0.79 +0.4
4,954,333 + AO356_22125 0.79 +0.9
4,954,334 - AO356_22125 0.79 -1.7
4,954,334 - AO356_22125 0.79 +1.1
4,954,732 + -1.3
4,954,732 + +0.7
4,954,732 + +0.5
4,954,732 + +1.0
4,954,733 - +0.2
4,954,767 - +1.3
4,954,767 - -0.1
4,954,768 + -0.3
4,954,768 + -0.8
4,954,768 + -0.7
4,954,768 + -0.1
4,954,793 + -2.6
4,954,793 + -0.2
4,954,793 + -0.8
4,954,793 + +0.3
4,954,793 + -0.4
4,954,818 + -0.5
4,954,819 - -0.6
4,954,852 - -1.2
4,954,964 + -1.6
4,954,964 + +0.3
4,954,965 - -0.1
4,954,965 - -0.6
4,954,987 + -1.7
4,954,987 + +0.3
4,954,987 + -1.1
4,955,029 + +0.1
4,955,030 - +0.6
4,955,030 - -0.3
4,955,031 + +0.8
4,955,031 + +1.6
4,955,031 + -1.6
4,955,031 + -0.1
4,955,031 + +0.5
4,955,031 + -0.4
4,955,031 + -0.6
4,955,031 + +0.4
4,955,031 + -0.0
4,955,031 + +0.2
4,955,031 + -2.0
4,955,032 - -0.8
4,955,032 - -1.2
4,955,032 - +1.5
4,955,032 - +0.8
4,955,032 - +0.6
4,955,032 - +0.4
4,955,032 - -0.1
4,955,035 + -0.1
4,955,035 + -0.5
4,955,035 + -0.7
4,955,035 + +0.4
4,955,035 + +0.2
4,955,035 + -1.1
4,955,035 + -0.7
4,955,035 + +0.4
4,955,035 + -1.9
4,955,035 + -2.1
4,955,035 + +0.6
4,955,035 + +0.4
4,955,035 + +1.0
4,955,035 + +0.1
4,955,036 - -1.3
4,955,036 - +0.1
4,955,036 - +0.7
4,955,036 - +0.6
4,955,036 - +0.9
4,955,036 - +0.4
4,955,036 - -0.7
4,955,039 + -1.6
4,955,039 + +0.4
4,955,039 + +0.5
4,955,040 - +1.9
4,955,040 - -1.1
4,955,040 - +1.1
4,955,040 - +0.6
4,955,040 - -1.7
4,955,040 - +0.2
4,955,040 - +0.4
4,955,065 - +0.5
4,955,118 + AO356_22130 0.15 +0.6
4,955,118 + AO356_22130 0.15 -2.6
4,955,197 - AO356_22130 0.57 -0.4
4,955,201 + AO356_22130 0.59 +0.3
4,955,202 - AO356_22130 0.60 +0.9
4,955,202 - AO356_22130 0.60 +1.1
4,955,202 - AO356_22130 0.60 -1.3
4,955,282 + +0.1
4,955,344 + +1.3
4,955,344 + -0.3
4,955,345 - +0.6
4,955,345 - +0.2
4,955,345 - +0.3
4,955,345 - -1.0
4,955,345 - -1.0
4,955,451 - AO356_22135 0.14 +0.7
4,955,487 - AO356_22135 0.17 +0.3
4,955,487 - AO356_22135 0.17 +0.9
4,955,487 - AO356_22135 0.17 -0.9
4,955,513 + AO356_22135 0.19 -0.4
4,955,513 + AO356_22135 0.19 -1.1
4,955,564 + AO356_22135 0.23 +0.3
4,955,564 + AO356_22135 0.23 +1.0
4,955,564 + AO356_22135 0.23 +0.0
4,955,564 + AO356_22135 0.23 -0.3
4,955,565 - AO356_22135 0.23 +0.6
4,955,565 - AO356_22135 0.23 -0.4
4,955,628 + AO356_22135 0.28 -0.1
4,955,629 - AO356_22135 0.28 -0.7
4,955,629 - AO356_22135 0.28 +0.7
4,955,654 + AO356_22135 0.30 +0.2
4,955,654 + AO356_22135 0.30 -2.0
4,955,654 + AO356_22135 0.30 -0.6
4,955,654 + AO356_22135 0.30 +0.5
4,955,655 - AO356_22135 0.30 -1.1
4,955,655 - AO356_22135 0.30 +0.3
4,955,655 - AO356_22135 0.30 +0.1
4,955,655 - AO356_22135 0.30 +1.1
4,955,655 - AO356_22135 0.30 +0.3
4,955,655 - AO356_22135 0.30 +0.3
4,955,760 - AO356_22135 0.39 +0.2
4,955,760 - AO356_22135 0.39 -0.9
4,955,760 - AO356_22135 0.39 -0.6
4,955,760 - AO356_22135 0.39 +1.1
4,955,927 + AO356_22135 0.52 +0.5
4,955,927 + AO356_22135 0.52 +0.5
4,955,927 + AO356_22135 0.52 -0.8
4,955,927 + AO356_22135 0.52 +0.3
4,955,927 + AO356_22135 0.52 -0.6
4,955,927 + AO356_22135 0.52 +0.7
4,955,927 + AO356_22135 0.52 +0.1
4,955,927 + AO356_22135 0.52 -0.4
4,955,927 + AO356_22135 0.52 +0.3
4,955,927 + AO356_22135 0.52 -0.2
4,955,927 + AO356_22135 0.52 -1.8
4,955,928 - AO356_22135 0.52 +0.3
4,955,928 - AO356_22135 0.52 +0.2
4,955,928 - AO356_22135 0.52 -0.8
4,955,928 - AO356_22135 0.52 +1.0
4,955,928 - AO356_22135 0.52 -0.6
4,955,928 - AO356_22135 0.52 +0.5
4,955,928 - AO356_22135 0.52 +0.8
4,955,969 - AO356_22135 0.55 +0.7
4,956,167 + AO356_22135 0.71 +0.1
4,956,168 - AO356_22135 0.71 +0.4
4,956,168 - AO356_22135 0.71 +0.1
4,956,203 + AO356_22135 0.74 -0.2
4,956,203 + AO356_22135 0.74 +1.9
4,956,203 + AO356_22135 0.74 -0.5
4,956,204 - AO356_22135 0.74 +0.3
4,956,204 - AO356_22135 0.74 -1.8
4,956,204 - AO356_22135 0.74 +0.1
4,956,204 - AO356_22135 0.74 -0.0

Or see this region's nucleotide sequence