Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21020

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21015 and AO356_21020 are separated by 464 nucleotidesAO356_21020 and AO356_21025 are separated by 176 nucleotides AO356_21015: AO356_21015 - vanillate O-demethylase oxidoreductase VanB, at 4,676,586 to 4,677,044 _21015 AO356_21020: AO356_21020 - hypothetical protein, at 4,677,509 to 4,677,970 _21020 AO356_21025: AO356_21025 - AraC family transcriptional regulator, at 4,678,147 to 4,679,094 _21025 Position (kb) 4677 4678Strain fitness (log2 ratio) -2 -1 0 1 2at 4676.524 kb on + strandat 4676.525 kb on - strandat 4676.525 kb on - strandat 4676.552 kb on + strandat 4676.552 kb on + strandat 4676.552 kb on + strandat 4676.553 kb on - strandat 4676.553 kb on - strandat 4676.553 kb on - strandat 4676.553 kb on - strandat 4676.560 kb on + strandat 4676.560 kb on + strandat 4676.560 kb on + strandat 4676.561 kb on - strandat 4676.730 kb on - strand, within AO356_21015at 4676.744 kb on + strand, within AO356_21015at 4676.744 kb on + strand, within AO356_21015at 4676.744 kb on + strand, within AO356_21015at 4676.744 kb on + strand, within AO356_21015at 4676.745 kb on - strand, within AO356_21015at 4676.745 kb on - strand, within AO356_21015at 4676.745 kb on - strand, within AO356_21015at 4676.748 kb on + strand, within AO356_21015at 4676.749 kb on - strand, within AO356_21015at 4676.768 kb on + strand, within AO356_21015at 4676.769 kb on - strand, within AO356_21015at 4676.769 kb on - strand, within AO356_21015at 4676.769 kb on - strand, within AO356_21015at 4676.832 kb on + strand, within AO356_21015at 4676.833 kb on - strand, within AO356_21015at 4676.851 kb on + strand, within AO356_21015at 4676.851 kb on + strand, within AO356_21015at 4676.851 kb on + strand, within AO356_21015at 4676.851 kb on + strand, within AO356_21015at 4676.857 kb on - strand, within AO356_21015at 4676.857 kb on - strand, within AO356_21015at 4676.912 kb on + strand, within AO356_21015at 4677.017 kb on + strandat 4677.017 kb on + strandat 4677.064 kb on + strandat 4677.064 kb on + strandat 4677.064 kb on + strandat 4677.064 kb on + strandat 4677.065 kb on - strandat 4677.065 kb on - strandat 4677.086 kb on + strandat 4677.086 kb on + strandat 4677.087 kb on - strandat 4677.088 kb on + strandat 4677.089 kb on - strandat 4677.100 kb on + strandat 4677.101 kb on - strandat 4677.112 kb on + strandat 4677.112 kb on + strandat 4677.113 kb on - strandat 4677.113 kb on - strandat 4677.116 kb on + strandat 4677.116 kb on + strandat 4677.116 kb on + strandat 4677.116 kb on + strandat 4677.116 kb on + strandat 4677.116 kb on + strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.117 kb on - strandat 4677.149 kb on - strandat 4677.149 kb on - strandat 4677.159 kb on + strandat 4677.159 kb on + strandat 4677.215 kb on + strandat 4677.215 kb on + strandat 4677.216 kb on - strandat 4677.216 kb on - strandat 4677.216 kb on - strandat 4677.302 kb on + strandat 4677.303 kb on - strandat 4677.303 kb on - strandat 4677.303 kb on - strandat 4677.316 kb on + strandat 4677.369 kb on + strandat 4677.369 kb on + strandat 4677.369 kb on + strandat 4677.369 kb on + strandat 4677.370 kb on - strandat 4677.370 kb on - strandat 4677.370 kb on - strandat 4677.370 kb on - strandat 4677.370 kb on - strandat 4677.370 kb on - strandat 4677.387 kb on - strandat 4677.471 kb on + strandat 4677.472 kb on - strandat 4677.492 kb on - strandat 4677.574 kb on + strand, within AO356_21020at 4677.575 kb on - strand, within AO356_21020at 4677.575 kb on - strand, within AO356_21020at 4677.617 kb on - strand, within AO356_21020at 4677.617 kb on - strand, within AO356_21020at 4677.659 kb on - strand, within AO356_21020at 4677.861 kb on + strand, within AO356_21020at 4677.940 kb on + strandat 4677.988 kb on + strandat 4677.989 kb on - strandat 4678.109 kb on - strandat 4678.109 kb on - strandat 4678.109 kb on - strandat 4678.216 kb on + strandat 4678.217 kb on - strandat 4678.268 kb on + strand, within AO356_21025at 4678.268 kb on + strand, within AO356_21025at 4678.448 kb on + strand, within AO356_21025at 4678.770 kb on - strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.836 kb on - strand, within AO356_21025at 4678.836 kb on - strand, within AO356_21025at 4678.850 kb on + strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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4,676,524 + +0.7
4,676,525 - +0.9
4,676,525 - +0.9
4,676,552 + +0.2
4,676,552 + +1.3
4,676,552 + -0.2
4,676,553 - -1.5
4,676,553 - +1.8
4,676,553 - +0.4
4,676,553 - -0.3
4,676,560 + +1.0
4,676,560 + -0.2
4,676,560 + -0.8
4,676,561 - +0.2
4,676,730 - AO356_21015 0.31 -0.0
4,676,744 + AO356_21015 0.34 -1.1
4,676,744 + AO356_21015 0.34 +0.8
4,676,744 + AO356_21015 0.34 +0.2
4,676,744 + AO356_21015 0.34 -0.4
4,676,745 - AO356_21015 0.35 +0.3
4,676,745 - AO356_21015 0.35 +1.1
4,676,745 - AO356_21015 0.35 +0.5
4,676,748 + AO356_21015 0.35 -0.1
4,676,749 - AO356_21015 0.36 +0.4
4,676,768 + AO356_21015 0.40 +0.1
4,676,769 - AO356_21015 0.40 +0.8
4,676,769 - AO356_21015 0.40 +0.6
4,676,769 - AO356_21015 0.40 -0.0
4,676,832 + AO356_21015 0.54 -0.6
4,676,833 - AO356_21015 0.54 +0.2
4,676,851 + AO356_21015 0.58 -0.3
4,676,851 + AO356_21015 0.58 -1.9
4,676,851 + AO356_21015 0.58 -0.4
4,676,851 + AO356_21015 0.58 -0.6
4,676,857 - AO356_21015 0.59 +0.4
4,676,857 - AO356_21015 0.59 +1.4
4,676,912 + AO356_21015 0.71 +0.1
4,677,017 + -0.2
4,677,017 + -0.9
4,677,064 + -1.5
4,677,064 + -0.4
4,677,064 + +1.2
4,677,064 + -0.5
4,677,065 - -0.2
4,677,065 - +0.4
4,677,086 + -0.2
4,677,086 + +0.0
4,677,087 - +1.7
4,677,088 + -0.1
4,677,089 - +1.2
4,677,100 + +1.8
4,677,101 - +1.5
4,677,112 + -0.3
4,677,112 + -1.1
4,677,113 - -0.5
4,677,113 - +0.7
4,677,116 + -0.0
4,677,116 + +0.4
4,677,116 + +0.8
4,677,116 + -1.4
4,677,116 + -1.8
4,677,116 + -0.3
4,677,117 - +0.7
4,677,117 - +1.4
4,677,117 - -0.4
4,677,117 - -0.1
4,677,117 - +0.5
4,677,117 - -1.0
4,677,117 - +0.6
4,677,117 - +1.2
4,677,149 - -0.2
4,677,149 - +1.8
4,677,159 + -0.4
4,677,159 + -0.6
4,677,215 + -0.9
4,677,215 + +1.6
4,677,216 - +0.1
4,677,216 - -0.5
4,677,216 - +1.1
4,677,302 + +0.1
4,677,303 - -0.3
4,677,303 - -0.3
4,677,303 - -1.0
4,677,316 + +0.1
4,677,369 + -0.6
4,677,369 + -0.9
4,677,369 + -0.3
4,677,369 + +0.1
4,677,370 - +0.0
4,677,370 - +1.2
4,677,370 - +0.6
4,677,370 - -0.2
4,677,370 - -0.4
4,677,370 - +1.0
4,677,387 - +0.1
4,677,471 + +0.5
4,677,472 - -0.5
4,677,492 - -0.4
4,677,574 + AO356_21020 0.14 +0.7
4,677,575 - AO356_21020 0.14 +1.3
4,677,575 - AO356_21020 0.14 +0.0
4,677,617 - AO356_21020 0.23 -1.5
4,677,617 - AO356_21020 0.23 -0.4
4,677,659 - AO356_21020 0.32 +1.0
4,677,861 + AO356_21020 0.76 +0.3
4,677,940 + +0.2
4,677,988 + -0.6
4,677,989 - +0.4
4,678,109 - +1.7
4,678,109 - -0.1
4,678,109 - +1.5
4,678,216 + -0.5
4,678,217 - -0.4
4,678,268 + AO356_21025 0.13 +0.9
4,678,268 + AO356_21025 0.13 -0.2
4,678,448 + AO356_21025 0.32 +0.8
4,678,770 - AO356_21025 0.66 -1.6
4,678,835 + AO356_21025 0.73 +0.0
4,678,835 + AO356_21025 0.73 +0.7
4,678,835 + AO356_21025 0.73 -0.4
4,678,835 + AO356_21025 0.73 +0.5
4,678,836 - AO356_21025 0.73 +1.3
4,678,836 - AO356_21025 0.73 +0.0
4,678,850 + AO356_21025 0.74 +0.2
4,678,851 - AO356_21025 0.74 +1.0
4,678,851 - AO356_21025 0.74 +0.4
4,678,851 - AO356_21025 0.74 +1.1
4,678,851 - AO356_21025 0.74 -0.8
4,678,851 - AO356_21025 0.74 +0.3
4,678,851 - AO356_21025 0.74 -1.6
4,678,856 + AO356_21025 0.75 +1.2
4,678,856 + AO356_21025 0.75 -2.1
4,678,856 + AO356_21025 0.75 -1.9
4,678,856 + AO356_21025 0.75 -0.0
4,678,857 - AO356_21025 0.75 +1.0
4,678,857 - AO356_21025 0.75 -0.8
4,678,857 - AO356_21025 0.75 -1.0
4,678,857 - AO356_21025 0.75 +0.1
4,678,857 - AO356_21025 0.75 +0.1
4,678,857 - AO356_21025 0.75 +0.3
4,678,857 - AO356_21025 0.75 +0.2

Or see this region's nucleotide sequence