Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20675

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20665 and AO356_20670 are separated by 21 nucleotidesAO356_20670 and AO356_20675 are separated by 95 nucleotidesAO356_20675 and AO356_20680 are separated by 261 nucleotidesAO356_20680 and AO356_20685 overlap by 4 nucleotides AO356_20665: AO356_20665 - fumarylacetoacetate hydrolase, at 4,611,364 to 4,612,062 _20665 AO356_20670: AO356_20670 - 3-oxoacyl-ACP reductase, at 4,612,084 to 4,612,842 _20670 AO356_20675: AO356_20675 - dihydrofolate reductase, at 4,612,938 to 4,613,894 _20675 AO356_20680: AO356_20680 - toxin-antitoxin toxin family protein, at 4,614,156 to 4,614,488 _20680 AO356_20685: AO356_20685 - XRE family transcriptional regulator, at 4,614,485 to 4,615,123 _20685 Position (kb) 4612 4613 4614Strain fitness (log2 ratio) -2 -1 0 1 2at 4612.322 kb on - strand, within AO356_20670at 4612.552 kb on + strand, within AO356_20670at 4612.553 kb on - strand, within AO356_20670at 4612.553 kb on - strand, within AO356_20670at 4612.553 kb on - strand, within AO356_20670at 4612.563 kb on + strand, within AO356_20670at 4612.615 kb on + strand, within AO356_20670at 4612.615 kb on + strand, within AO356_20670at 4612.615 kb on + strand, within AO356_20670at 4612.616 kb on - strand, within AO356_20670at 4612.759 kb on + strand, within AO356_20670at 4612.760 kb on - strand, within AO356_20670at 4612.896 kb on + strandat 4612.935 kb on + strandat 4612.935 kb on + strandat 4612.935 kb on + strandat 4612.935 kb on + strandat 4612.935 kb on + strandat 4612.935 kb on + strandat 4612.935 kb on + strandat 4612.936 kb on - strandat 4612.936 kb on - strandat 4612.936 kb on - strandat 4613.022 kb on + strandat 4613.049 kb on + strand, within AO356_20675at 4613.049 kb on + strand, within AO356_20675at 4613.049 kb on + strand, within AO356_20675at 4613.050 kb on - strand, within AO356_20675at 4613.050 kb on - strand, within AO356_20675at 4613.050 kb on - strand, within AO356_20675at 4613.050 kb on - strand, within AO356_20675at 4613.050 kb on - strand, within AO356_20675at 4613.050 kb on - strand, within AO356_20675at 4613.053 kb on + strand, within AO356_20675at 4613.054 kb on - strand, within AO356_20675at 4613.054 kb on - strand, within AO356_20675at 4613.054 kb on - strand, within AO356_20675at 4613.269 kb on + strand, within AO356_20675at 4613.294 kb on - strand, within AO356_20675at 4613.311 kb on - strand, within AO356_20675at 4613.466 kb on + strand, within AO356_20675at 4613.466 kb on + strand, within AO356_20675at 4613.466 kb on + strand, within AO356_20675at 4613.466 kb on + strand, within AO356_20675at 4613.466 kb on + strand, within AO356_20675at 4613.467 kb on - strand, within AO356_20675at 4613.467 kb on - strand, within AO356_20675at 4613.467 kb on - strand, within AO356_20675at 4613.967 kb on + strandat 4613.968 kb on - strandat 4613.968 kb on - strandat 4613.968 kb on - strandat 4614.021 kb on - strandat 4614.021 kb on - strandat 4614.021 kb on - strandat 4614.063 kb on + strandat 4614.064 kb on - strandat 4614.075 kb on + strandat 4614.075 kb on + strandat 4614.075 kb on + strandat 4614.076 kb on - strandat 4614.076 kb on - strandat 4614.111 kb on - strandat 4614.155 kb on + strandat 4614.156 kb on - strandat 4614.156 kb on - strandat 4614.161 kb on + strandat 4614.162 kb on - strandat 4614.162 kb on - strandat 4614.163 kb on + strandat 4614.163 kb on + strandat 4614.163 kb on + strandat 4614.163 kb on + strandat 4614.163 kb on + strandat 4614.163 kb on + strandat 4614.164 kb on - strandat 4614.164 kb on - strandat 4614.164 kb on - strandat 4614.164 kb on - strandat 4614.164 kb on - strandat 4614.352 kb on + strand, within AO356_20680at 4614.363 kb on - strand, within AO356_20680at 4614.363 kb on - strand, within AO356_20680at 4614.390 kb on + strand, within AO356_20680at 4614.390 kb on + strand, within AO356_20680at 4614.390 kb on + strand, within AO356_20680at 4614.391 kb on - strand, within AO356_20680at 4614.391 kb on - strand, within AO356_20680at 4614.391 kb on - strand, within AO356_20680at 4614.408 kb on + strand, within AO356_20680at 4614.409 kb on - strand, within AO356_20680at 4614.409 kb on - strand, within AO356_20680at 4614.423 kb on + strand, within AO356_20680at 4614.423 kb on + strand, within AO356_20680at 4614.423 kb on + strand, within AO356_20680at 4614.423 kb on + strand, within AO356_20680at 4614.423 kb on + strand, within AO356_20680at 4614.424 kb on - strand, within AO356_20680at 4614.424 kb on - strand, within AO356_20680at 4614.424 kb on - strand, within AO356_20680at 4614.424 kb on - strand, within AO356_20680at 4614.438 kb on + strand, within AO356_20680at 4614.438 kb on + strand, within AO356_20680at 4614.439 kb on - strand, within AO356_20680at 4614.459 kb on + strandat 4614.459 kb on + strandat 4614.460 kb on - strandat 4614.478 kb on + strandat 4614.549 kb on + strand, within AO356_20685at 4614.550 kb on - strand, within AO356_20685at 4614.550 kb on - strand, within AO356_20685at 4614.702 kb on - strand, within AO356_20685at 4614.825 kb on + strand, within AO356_20685at 4614.832 kb on + strand, within AO356_20685at 4614.832 kb on + strand, within AO356_20685at 4614.891 kb on - strand, within AO356_20685

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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4,612,322 - AO356_20670 0.31 +2.4
4,612,552 + AO356_20670 0.62 -0.6
4,612,553 - AO356_20670 0.62 +0.9
4,612,553 - AO356_20670 0.62 +0.3
4,612,553 - AO356_20670 0.62 +0.4
4,612,563 + AO356_20670 0.63 +0.1
4,612,615 + AO356_20670 0.70 -0.3
4,612,615 + AO356_20670 0.70 -0.4
4,612,615 + AO356_20670 0.70 +0.6
4,612,616 - AO356_20670 0.70 +1.0
4,612,759 + AO356_20670 0.89 -0.2
4,612,760 - AO356_20670 0.89 -0.9
4,612,896 + +0.7
4,612,935 + -0.2
4,612,935 + +0.1
4,612,935 + +0.8
4,612,935 + -0.1
4,612,935 + -0.4
4,612,935 + -0.5
4,612,935 + +1.0
4,612,936 - +1.3
4,612,936 - -1.8
4,612,936 - +0.3
4,613,022 + +0.3
4,613,049 + AO356_20675 0.12 -1.4
4,613,049 + AO356_20675 0.12 +0.4
4,613,049 + AO356_20675 0.12 +0.1
4,613,050 - AO356_20675 0.12 +0.0
4,613,050 - AO356_20675 0.12 +1.1
4,613,050 - AO356_20675 0.12 -2.2
4,613,050 - AO356_20675 0.12 -0.8
4,613,050 - AO356_20675 0.12 -0.1
4,613,050 - AO356_20675 0.12 -0.7
4,613,053 + AO356_20675 0.12 -0.3
4,613,054 - AO356_20675 0.12 -0.8
4,613,054 - AO356_20675 0.12 +0.5
4,613,054 - AO356_20675 0.12 +0.3
4,613,269 + AO356_20675 0.35 +0.2
4,613,294 - AO356_20675 0.37 -0.4
4,613,311 - AO356_20675 0.39 -0.1
4,613,466 + AO356_20675 0.55 +0.2
4,613,466 + AO356_20675 0.55 -0.2
4,613,466 + AO356_20675 0.55 +0.2
4,613,466 + AO356_20675 0.55 -1.4
4,613,466 + AO356_20675 0.55 -0.1
4,613,467 - AO356_20675 0.55 -0.8
4,613,467 - AO356_20675 0.55 +0.8
4,613,467 - AO356_20675 0.55 -0.0
4,613,967 + -0.6
4,613,968 - -0.8
4,613,968 - -0.2
4,613,968 - +0.6
4,614,021 - +2.0
4,614,021 - +0.1
4,614,021 - -0.8
4,614,063 + -0.7
4,614,064 - +0.0
4,614,075 + +1.0
4,614,075 + +1.3
4,614,075 + -0.4
4,614,076 - +0.4
4,614,076 - -0.2
4,614,111 - -1.0
4,614,155 + +0.5
4,614,156 - +0.5
4,614,156 - +1.3
4,614,161 + -0.2
4,614,162 - +0.2
4,614,162 - -0.2
4,614,163 + +0.2
4,614,163 + +0.1
4,614,163 + -0.5
4,614,163 + +0.7
4,614,163 + +0.3
4,614,163 + -0.4
4,614,164 - -0.4
4,614,164 - -0.4
4,614,164 - +1.5
4,614,164 - +0.4
4,614,164 - -0.4
4,614,352 + AO356_20680 0.59 +0.5
4,614,363 - AO356_20680 0.62 -0.3
4,614,363 - AO356_20680 0.62 +1.2
4,614,390 + AO356_20680 0.70 +1.4
4,614,390 + AO356_20680 0.70 +0.2
4,614,390 + AO356_20680 0.70 -0.7
4,614,391 - AO356_20680 0.71 -1.8
4,614,391 - AO356_20680 0.71 +0.0
4,614,391 - AO356_20680 0.71 +1.6
4,614,408 + AO356_20680 0.76 +0.3
4,614,409 - AO356_20680 0.76 -1.1
4,614,409 - AO356_20680 0.76 +0.6
4,614,423 + AO356_20680 0.80 -0.6
4,614,423 + AO356_20680 0.80 -0.1
4,614,423 + AO356_20680 0.80 -0.4
4,614,423 + AO356_20680 0.80 -0.4
4,614,423 + AO356_20680 0.80 +0.2
4,614,424 - AO356_20680 0.80 -0.0
4,614,424 - AO356_20680 0.80 -0.7
4,614,424 - AO356_20680 0.80 -0.4
4,614,424 - AO356_20680 0.80 +0.3
4,614,438 + AO356_20680 0.85 +1.4
4,614,438 + AO356_20680 0.85 +0.7
4,614,439 - AO356_20680 0.85 -0.1
4,614,459 + -1.1
4,614,459 + -0.1
4,614,460 - +0.9
4,614,478 + +1.2
4,614,549 + AO356_20685 0.10 +0.6
4,614,550 - AO356_20685 0.10 +1.1
4,614,550 - AO356_20685 0.10 +0.6
4,614,702 - AO356_20685 0.34 -0.2
4,614,825 + AO356_20685 0.53 +0.6
4,614,832 + AO356_20685 0.54 +0.4
4,614,832 + AO356_20685 0.54 +0.3
4,614,891 - AO356_20685 0.64 +0.3

Or see this region's nucleotide sequence