Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16915

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16905 and AO356_16910 overlap by 4 nucleotidesAO356_16910 and AO356_16915 are separated by 129 nucleotidesAO356_16915 and AO356_16920 are separated by 139 nucleotides AO356_16905: AO356_16905 - hypothetical protein, at 3,810,584 to 3,811,543 _16905 AO356_16910: AO356_16910 - RNA polymerase subunit sigma, at 3,811,540 to 3,812,028 _16910 AO356_16915: AO356_16915 - AraC family transcriptional regulator, at 3,812,158 to 3,813,033 _16915 AO356_16920: AO356_16920 - hypothetical protein, at 3,813,173 to 3,814,075 _16920 Position (kb) 3812 3813 3814Strain fitness (log2 ratio) -2 -1 0 1at 3811.268 kb on + strand, within AO356_16905at 3811.269 kb on - strand, within AO356_16905at 3811.346 kb on + strand, within AO356_16905at 3811.378 kb on + strand, within AO356_16905at 3811.379 kb on - strand, within AO356_16905at 3811.379 kb on - strand, within AO356_16905at 3811.405 kb on + strand, within AO356_16905at 3811.405 kb on + strand, within AO356_16905at 3811.543 kb on + strandat 3811.543 kb on + strandat 3811.543 kb on + strandat 3811.544 kb on - strandat 3811.544 kb on - strandat 3811.544 kb on - strandat 3811.631 kb on + strand, within AO356_16910at 3811.632 kb on - strand, within AO356_16910at 3811.632 kb on - strand, within AO356_16910at 3811.632 kb on - strand, within AO356_16910at 3811.632 kb on - strand, within AO356_16910at 3811.790 kb on + strand, within AO356_16910at 3811.790 kb on + strand, within AO356_16910at 3811.818 kb on - strand, within AO356_16910at 3811.831 kb on + strand, within AO356_16910at 3811.831 kb on + strand, within AO356_16910at 3811.831 kb on + strand, within AO356_16910at 3811.831 kb on + strand, within AO356_16910at 3811.831 kb on + strand, within AO356_16910at 3811.832 kb on - strand, within AO356_16910at 3811.851 kb on + strand, within AO356_16910at 3811.997 kb on + strandat 3811.997 kb on + strandat 3812.061 kb on - strandat 3812.181 kb on - strandat 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.382 kb on - strand, within AO356_16915at 3812.450 kb on + strand, within AO356_16915at 3812.450 kb on + strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.732 kb on + strand, within AO356_16915at 3812.732 kb on + strand, within AO356_16915at 3812.733 kb on - strand, within AO356_16915at 3812.733 kb on - strand, within AO356_16915at 3812.794 kb on + strand, within AO356_16915at 3812.847 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.900 kb on + strand, within AO356_16915at 3812.901 kb on - strand, within AO356_16915at 3812.901 kb on - strand, within AO356_16915at 3813.062 kb on + strandat 3813.062 kb on + strandat 3813.062 kb on + strandat 3813.113 kb on + strandat 3813.114 kb on - strandat 3813.114 kb on - strandat 3813.114 kb on - strandat 3813.114 kb on - strandat 3813.188 kb on + strandat 3813.188 kb on + strandat 3813.189 kb on - strandat 3813.189 kb on - strandat 3813.196 kb on + strandat 3813.197 kb on - strandat 3813.197 kb on - strandat 3813.276 kb on - strand, within AO356_16920at 3813.734 kb on + strand, within AO356_16920at 3813.734 kb on + strand, within AO356_16920at 3813.735 kb on - strand, within AO356_16920at 3813.806 kb on + strand, within AO356_16920at 3813.824 kb on + strand, within AO356_16920at 3813.824 kb on + strand, within AO356_16920at 3813.825 kb on - strand, within AO356_16920at 3813.825 kb on - strand, within AO356_16920at 3813.863 kb on + strand, within AO356_16920at 3813.905 kb on + strand, within AO356_16920at 3813.905 kb on + strand, within AO356_16920at 3813.906 kb on - strand, within AO356_16920

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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3,811,268 + AO356_16905 0.71 -1.5
3,811,269 - AO356_16905 0.71 +0.1
3,811,346 + AO356_16905 0.79 +0.1
3,811,378 + AO356_16905 0.83 -1.5
3,811,379 - AO356_16905 0.83 +0.1
3,811,379 - AO356_16905 0.83 -0.1
3,811,405 + AO356_16905 0.86 -1.4
3,811,405 + AO356_16905 0.86 -0.4
3,811,543 + -0.2
3,811,543 + -0.4
3,811,543 + -1.1
3,811,544 - +0.0
3,811,544 - -0.4
3,811,544 - +0.9
3,811,631 + AO356_16910 0.19 -0.4
3,811,632 - AO356_16910 0.19 -2.0
3,811,632 - AO356_16910 0.19 +0.1
3,811,632 - AO356_16910 0.19 +0.1
3,811,632 - AO356_16910 0.19 -0.7
3,811,790 + AO356_16910 0.51 -1.4
3,811,790 + AO356_16910 0.51 +0.8
3,811,818 - AO356_16910 0.57 -1.3
3,811,831 + AO356_16910 0.60 -0.5
3,811,831 + AO356_16910 0.60 -1.6
3,811,831 + AO356_16910 0.60 +0.6
3,811,831 + AO356_16910 0.60 -1.5
3,811,831 + AO356_16910 0.60 -1.2
3,811,832 - AO356_16910 0.60 -1.0
3,811,851 + AO356_16910 0.64 -1.1
3,811,997 + -0.8
3,811,997 + -1.4
3,812,061 - +0.3
3,812,181 - +0.9
3,812,326 + AO356_16915 0.19 +1.2
3,812,326 + AO356_16915 0.19 +0.6
3,812,326 + AO356_16915 0.19 +0.2
3,812,326 + AO356_16915 0.19 -2.3
3,812,326 + AO356_16915 0.19 -0.3
3,812,326 + AO356_16915 0.19 +0.7
3,812,326 + AO356_16915 0.19 -0.3
3,812,327 - AO356_16915 0.19 +0.3
3,812,327 - AO356_16915 0.19 -1.2
3,812,327 - AO356_16915 0.19 +1.2
3,812,327 - AO356_16915 0.19 +0.5
3,812,327 - AO356_16915 0.19 -0.7
3,812,330 + AO356_16915 0.20 -0.7
3,812,330 + AO356_16915 0.20 -0.1
3,812,330 + AO356_16915 0.20 -0.7
3,812,330 + AO356_16915 0.20 -0.2
3,812,330 + AO356_16915 0.20 -0.4
3,812,330 + AO356_16915 0.20 -0.5
3,812,330 + AO356_16915 0.20 -0.5
3,812,330 + AO356_16915 0.20 +0.8
3,812,330 + AO356_16915 0.20 -2.1
3,812,330 + AO356_16915 0.20 +1.2
3,812,331 - AO356_16915 0.20 +0.1
3,812,331 - AO356_16915 0.20 +0.2
3,812,331 - AO356_16915 0.20 +1.1
3,812,331 - AO356_16915 0.20 +0.2
3,812,331 - AO356_16915 0.20 +0.1
3,812,331 - AO356_16915 0.20 +0.8
3,812,331 - AO356_16915 0.20 +0.3
3,812,331 - AO356_16915 0.20 +0.7
3,812,331 - AO356_16915 0.20 +0.4
3,812,331 - AO356_16915 0.20 +0.8
3,812,382 - AO356_16915 0.26 -0.8
3,812,450 + AO356_16915 0.33 +0.3
3,812,450 + AO356_16915 0.33 -1.4
3,812,451 - AO356_16915 0.33 +1.3
3,812,451 - AO356_16915 0.33 +0.3
3,812,451 - AO356_16915 0.33 +0.3
3,812,451 - AO356_16915 0.33 +0.4
3,812,451 - AO356_16915 0.33 +1.7
3,812,451 - AO356_16915 0.33 +0.3
3,812,732 + AO356_16915 0.66 -0.2
3,812,732 + AO356_16915 0.66 -0.4
3,812,733 - AO356_16915 0.66 +0.8
3,812,733 - AO356_16915 0.66 -0.8
3,812,794 + AO356_16915 0.73 -0.5
3,812,847 + AO356_16915 0.79 +0.9
3,812,867 + AO356_16915 0.81 +0.1
3,812,867 + AO356_16915 0.81 -0.5
3,812,867 + AO356_16915 0.81 +0.3
3,812,867 + AO356_16915 0.81 -1.1
3,812,867 + AO356_16915 0.81 +0.8
3,812,867 + AO356_16915 0.81 -0.3
3,812,868 - AO356_16915 0.81 +1.4
3,812,868 - AO356_16915 0.81 -0.6
3,812,868 - AO356_16915 0.81 +0.2
3,812,868 - AO356_16915 0.81 +0.5
3,812,868 - AO356_16915 0.81 -1.1
3,812,868 - AO356_16915 0.81 +0.0
3,812,880 + AO356_16915 0.82 -1.2
3,812,880 + AO356_16915 0.82 -0.7
3,812,880 + AO356_16915 0.82 +0.6
3,812,880 + AO356_16915 0.82 -0.9
3,812,880 + AO356_16915 0.82 -1.0
3,812,880 + AO356_16915 0.82 -0.6
3,812,880 + AO356_16915 0.82 +1.0
3,812,880 + AO356_16915 0.82 +0.0
3,812,880 + AO356_16915 0.82 -0.7
3,812,880 + AO356_16915 0.82 +0.7
3,812,880 + AO356_16915 0.82 -1.3
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 -0.4
3,812,881 - AO356_16915 0.83 -0.4
3,812,881 - AO356_16915 0.83 +0.1
3,812,881 - AO356_16915 0.83 -0.4
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 +1.3
3,812,881 - AO356_16915 0.83 +0.9
3,812,881 - AO356_16915 0.83 -0.6
3,812,881 - AO356_16915 0.83 -0.7
3,812,881 - AO356_16915 0.83 +1.4
3,812,881 - AO356_16915 0.83 +1.3
3,812,881 - AO356_16915 0.83 -1.0
3,812,881 - AO356_16915 0.83 -1.1
3,812,881 - AO356_16915 0.83 -0.8
3,812,881 - AO356_16915 0.83 +0.6
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 +0.1
3,812,881 - AO356_16915 0.83 +0.1
3,812,900 + AO356_16915 0.85 +0.3
3,812,901 - AO356_16915 0.85 +0.3
3,812,901 - AO356_16915 0.85 -1.7
3,813,062 + +0.5
3,813,062 + +0.7
3,813,062 + -1.6
3,813,113 + -0.5
3,813,114 - -0.2
3,813,114 - -0.2
3,813,114 - -0.4
3,813,114 - +0.9
3,813,188 + -1.2
3,813,188 + +0.9
3,813,189 - +0.1
3,813,189 - -0.2
3,813,196 + -0.2
3,813,197 - -0.1
3,813,197 - +0.4
3,813,276 - AO356_16920 0.11 +0.7
3,813,734 + AO356_16920 0.62 -0.2
3,813,734 + AO356_16920 0.62 +1.3
3,813,735 - AO356_16920 0.62 -0.6
3,813,806 + AO356_16920 0.70 +0.1
3,813,824 + AO356_16920 0.72 -0.3
3,813,824 + AO356_16920 0.72 -0.2
3,813,825 - AO356_16920 0.72 -0.1
3,813,825 - AO356_16920 0.72 +0.3
3,813,863 + AO356_16920 0.76 -0.9
3,813,905 + AO356_16920 0.81 +0.1
3,813,905 + AO356_16920 0.81 +0.6
3,813,906 - AO356_16920 0.81 +0.8

Or see this region's nucleotide sequence