Experiment: Chlorite 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16385 and AO356_16390 are separated by 61 nucleotides AO356_16390 and AO356_16395 are separated by 103 nucleotides AO356_16395 and AO356_16400 are separated by 332 nucleotides
AO356_16385: AO356_16385 - transcriptional regulator, at 3,701,533 to 3,702,447
_16385
AO356_16390: AO356_16390 - tRNA-Met, at 3,702,509 to 3,702,585
_16390
AO356_16395: AO356_16395 - chemotaxis protein, at 3,702,689 to 3,704,746
_16395
AO356_16400: AO356_16400 - Fosmidomycin resistance protein, at 3,705,079 to 3,706,296
_16400
Position (kb)
3702
3703
3704
3705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.734 kb on + strand, within AO356_16385 at 3701.734 kb on + strand, within AO356_16385 at 3701.734 kb on + strand, within AO356_16385 at 3701.735 kb on - strand, within AO356_16385 at 3702.062 kb on + strand, within AO356_16385 at 3702.062 kb on + strand, within AO356_16385 at 3702.063 kb on - strand, within AO356_16385 at 3702.069 kb on + strand, within AO356_16385 at 3702.307 kb on + strand, within AO356_16385 at 3702.307 kb on + strand, within AO356_16385 at 3702.403 kb on + strand at 3702.404 kb on - strand at 3702.425 kb on + strand at 3702.425 kb on + strand at 3702.425 kb on + strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.468 kb on + strand at 3702.482 kb on - strand at 3702.482 kb on - strand at 3702.641 kb on - strand at 3703.705 kb on - strand, within AO356_16395 at 3703.743 kb on - strand, within AO356_16395 at 3704.042 kb on - strand, within AO356_16395 at 3704.184 kb on + strand, within AO356_16395 at 3704.185 kb on - strand, within AO356_16395 at 3704.449 kb on - strand, within AO356_16395 at 3704.449 kb on - strand, within AO356_16395 at 3704.554 kb on + strand at 3704.662 kb on + strand at 3704.732 kb on + strand at 3704.733 kb on - strand at 3704.733 kb on - strand at 3704.733 kb on - strand at 3704.753 kb on - strand at 3704.753 kb on - strand at 3704.753 kb on - strand at 3704.802 kb on + strand at 3704.802 kb on + strand at 3704.803 kb on - strand at 3704.819 kb on + strand at 3704.819 kb on + strand at 3704.820 kb on - strand at 3704.854 kb on + strand at 3704.854 kb on + strand at 3704.854 kb on + strand at 3704.854 kb on + strand at 3704.898 kb on + strand at 3704.898 kb on + strand at 3704.898 kb on + strand at 3704.899 kb on - strand at 3704.912 kb on - strand at 3704.913 kb on + strand at 3704.913 kb on + strand at 3704.913 kb on + strand at 3704.913 kb on + strand at 3704.913 kb on + strand at 3704.913 kb on + strand at 3704.914 kb on - strand at 3704.914 kb on - strand at 3704.914 kb on - strand at 3704.914 kb on - strand at 3704.914 kb on - strand at 3704.921 kb on + strand at 3704.922 kb on - strand at 3704.998 kb on + strand at 3704.999 kb on - strand at 3704.999 kb on - strand at 3705.066 kb on + strand at 3705.067 kb on - strand at 3705.067 kb on - strand at 3705.085 kb on - strand at 3705.094 kb on - strand at 3705.221 kb on - strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.241 kb on + strand, within AO356_16400 at 3705.242 kb on - strand, within AO356_16400 at 3705.242 kb on - strand, within AO356_16400 at 3705.242 kb on - strand, within AO356_16400 at 3705.242 kb on - strand, within AO356_16400 at 3705.242 kb on - strand, within AO356_16400 at 3705.242 kb on - strand, within AO356_16400 at 3705.428 kb on + strand, within AO356_16400 at 3705.428 kb on + strand, within AO356_16400 at 3705.429 kb on - strand, within AO356_16400 at 3705.429 kb on - strand, within AO356_16400 at 3705.602 kb on - strand, within AO356_16400 at 3705.661 kb on + strand, within AO356_16400 at 3705.738 kb on - strand, within AO356_16400
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.04 mM remove 3,701,703 + AO356_16385 0.19 +1.0 3,701,703 + AO356_16385 0.19 -0.1 3,701,703 + AO356_16385 0.19 -0.9 3,701,703 + AO356_16385 0.19 -0.3 3,701,703 + AO356_16385 0.19 +1.0 3,701,704 - AO356_16385 0.19 -0.3 3,701,704 - AO356_16385 0.19 -1.0 3,701,704 - AO356_16385 0.19 +1.0 3,701,704 - AO356_16385 0.19 +0.5 3,701,704 - AO356_16385 0.19 +1.3 3,701,734 + AO356_16385 0.22 +0.5 3,701,734 + AO356_16385 0.22 +0.7 3,701,734 + AO356_16385 0.22 -0.5 3,701,735 - AO356_16385 0.22 -0.3 3,702,062 + AO356_16385 0.58 +1.7 3,702,062 + AO356_16385 0.58 -0.9 3,702,063 - AO356_16385 0.58 +0.8 3,702,069 + AO356_16385 0.59 +0.5 3,702,307 + AO356_16385 0.85 -0.6 3,702,307 + AO356_16385 0.85 -0.9 3,702,403 + -2.2 3,702,404 - +0.6 3,702,425 + -1.2 3,702,425 + +0.3 3,702,425 + +0.2 3,702,426 - +0.2 3,702,426 - -0.3 3,702,426 - -0.5 3,702,426 - +0.2 3,702,426 - +0.7 3,702,468 + +0.4 3,702,482 - -0.1 3,702,482 - -0.8 3,702,641 - +0.0 3,703,705 - AO356_16395 0.49 -0.2 3,703,743 - AO356_16395 0.51 +1.3 3,704,042 - AO356_16395 0.66 +2.0 3,704,184 + AO356_16395 0.73 +0.2 3,704,185 - AO356_16395 0.73 +0.7 3,704,449 - AO356_16395 0.86 -0.2 3,704,449 - AO356_16395 0.86 +0.1 3,704,554 + +0.0 3,704,662 + +0.2 3,704,732 + -0.2 3,704,733 - +1.4 3,704,733 - -0.9 3,704,733 - -0.5 3,704,753 - +0.2 3,704,753 - +0.0 3,704,753 - -1.0 3,704,802 + +0.3 3,704,802 + +0.5 3,704,803 - -0.4 3,704,819 + +0.2 3,704,819 + -0.3 3,704,820 - +2.0 3,704,854 + +0.3 3,704,854 + -0.3 3,704,854 + +1.9 3,704,854 + +0.1 3,704,898 + +0.0 3,704,898 + +0.7 3,704,898 + -0.7 3,704,899 - +0.4 3,704,912 - -1.5 3,704,913 + -0.9 3,704,913 + -0.8 3,704,913 + +0.9 3,704,913 + +0.1 3,704,913 + -1.9 3,704,913 + +1.7 3,704,914 - -2.2 3,704,914 - -0.6 3,704,914 - +0.7 3,704,914 - +0.4 3,704,914 - -0.4 3,704,921 + -0.3 3,704,922 - +0.0 3,704,998 + -0.3 3,704,999 - +0.7 3,704,999 - +0.2 3,705,066 + -0.4 3,705,067 - +0.8 3,705,067 - -0.1 3,705,085 - -1.3 3,705,094 - +0.1 3,705,221 - AO356_16400 0.12 +1.3 3,705,241 + AO356_16400 0.13 -1.6 3,705,241 + AO356_16400 0.13 -0.9 3,705,241 + AO356_16400 0.13 +0.4 3,705,241 + AO356_16400 0.13 -0.4 3,705,241 + AO356_16400 0.13 -1.1 3,705,241 + AO356_16400 0.13 +2.3 3,705,241 + AO356_16400 0.13 -0.2 3,705,241 + AO356_16400 0.13 +0.6 3,705,241 + AO356_16400 0.13 +0.1 3,705,241 + AO356_16400 0.13 +0.6 3,705,242 - AO356_16400 0.13 -0.2 3,705,242 - AO356_16400 0.13 +1.3 3,705,242 - AO356_16400 0.13 +1.4 3,705,242 - AO356_16400 0.13 +0.4 3,705,242 - AO356_16400 0.13 -0.1 3,705,242 - AO356_16400 0.13 -0.2 3,705,428 + AO356_16400 0.29 +0.4 3,705,428 + AO356_16400 0.29 +0.0 3,705,429 - AO356_16400 0.29 +0.3 3,705,429 - AO356_16400 0.29 +0.0 3,705,602 - AO356_16400 0.43 -1.4 3,705,661 + AO356_16400 0.48 -0.6 3,705,738 - AO356_16400 0.54 +0.4
Or see this region's nucleotide sequence