Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15000

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14990 and AO356_14995 are separated by 115 nucleotidesAO356_14995 and AO356_15000 overlap by 4 nucleotidesAO356_15000 and AO356_15005 are separated by 486 nucleotides AO356_14990: AO356_14990 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,388,674 to 3,390,572 _14990 AO356_14995: AO356_14995 - geranyl transferase, at 3,390,688 to 3,391,575 _14995 AO356_15000: AO356_15000 - exodeoxyribonuclease VII small subunit, at 3,391,572 to 3,391,814 _15000 AO356_15005: AO356_15005 - hypothetical protein, at 3,392,301 to 3,393,089 _15005 Position (kb) 3391 3392Strain fitness (log2 ratio) -2 -1 0 1 2at 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.588 kb on - strandat 3390.592 kb on - strandat 3390.592 kb on - strandat 3390.592 kb on - strandat 3390.592 kb on - strandat 3390.592 kb on - strandat 3390.594 kb on - strandat 3390.594 kb on - strandat 3390.594 kb on - strandat 3390.594 kb on - strandat 3390.612 kb on - strandat 3390.612 kb on - strandat 3390.617 kb on - strandat 3390.617 kb on - strandat 3390.617 kb on - strandat 3390.617 kb on - strandat 3390.667 kb on + strandat 3390.667 kb on + strandat 3390.667 kb on + strandat 3390.667 kb on + strandat 3390.667 kb on + strandat 3390.667 kb on + strandat 3390.667 kb on + strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.668 kb on - strandat 3390.686 kb on + strandat 3390.687 kb on - strandat 3390.687 kb on - strandat 3390.687 kb on - strandat 3391.854 kb on - strandat 3392.054 kb on + strandat 3392.054 kb on + strandat 3392.055 kb on - strandat 3392.070 kb on + strandat 3392.095 kb on + strandat 3392.104 kb on + strandat 3392.105 kb on - strandat 3392.127 kb on + strandat 3392.127 kb on + strandat 3392.128 kb on - strandat 3392.128 kb on - strandat 3392.182 kb on + strandat 3392.182 kb on + strandat 3392.182 kb on + strandat 3392.183 kb on - strandat 3392.183 kb on - strandat 3392.183 kb on - strandat 3392.183 kb on - strandat 3392.183 kb on - strandat 3392.183 kb on - strandat 3392.186 kb on + strandat 3392.186 kb on + strandat 3392.187 kb on - strandat 3392.187 kb on - strandat 3392.187 kb on - strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.202 kb on + strandat 3392.203 kb on - strandat 3392.215 kb on - strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.298 kb on + strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.299 kb on - strandat 3392.318 kb on - strandat 3392.532 kb on - strand, within AO356_15005at 3392.532 kb on - strand, within AO356_15005at 3392.565 kb on + strand, within AO356_15005at 3392.565 kb on + strand, within AO356_15005at 3392.565 kb on + strand, within AO356_15005at 3392.565 kb on + strand, within AO356_15005at 3392.565 kb on + strand, within AO356_15005at 3392.566 kb on - strand, within AO356_15005at 3392.566 kb on - strand, within AO356_15005at 3392.566 kb on - strand, within AO356_15005at 3392.598 kb on + strand, within AO356_15005at 3392.599 kb on - strand, within AO356_15005at 3392.599 kb on - strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.673 kb on + strand, within AO356_15005at 3392.674 kb on - strand, within AO356_15005at 3392.674 kb on - strand, within AO356_15005at 3392.756 kb on + strand, within AO356_15005at 3392.757 kb on - strand, within AO356_15005

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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3,390,588 - -1.2
3,390,588 - +1.1
3,390,588 - -0.5
3,390,588 - -0.5
3,390,588 - +0.3
3,390,588 - +0.6
3,390,588 - +1.7
3,390,588 - -0.6
3,390,592 - -0.9
3,390,592 - -0.0
3,390,592 - -0.5
3,390,592 - +1.4
3,390,592 - +0.5
3,390,594 - +0.7
3,390,594 - +1.0
3,390,594 - +0.1
3,390,594 - -0.5
3,390,612 - +0.9
3,390,612 - -0.5
3,390,617 - -0.1
3,390,617 - +0.0
3,390,617 - -0.0
3,390,617 - -0.1
3,390,667 + -0.4
3,390,667 + +0.2
3,390,667 + -0.8
3,390,667 + +0.4
3,390,667 + -0.8
3,390,667 + -2.0
3,390,667 + +0.8
3,390,668 - -1.5
3,390,668 - +0.1
3,390,668 - -0.2
3,390,668 - +0.2
3,390,668 - -0.0
3,390,668 - -0.1
3,390,668 - -0.2
3,390,668 - -2.2
3,390,686 + -0.9
3,390,687 - +0.6
3,390,687 - +1.4
3,390,687 - -0.7
3,391,854 - +1.2
3,392,054 + +0.4
3,392,054 + -0.4
3,392,055 - -1.6
3,392,070 + -0.1
3,392,095 + +0.8
3,392,104 + -0.6
3,392,105 - -0.1
3,392,127 + +1.0
3,392,127 + -0.4
3,392,128 - -0.7
3,392,128 - -0.6
3,392,182 + +1.0
3,392,182 + +0.1
3,392,182 + +1.8
3,392,183 - +0.1
3,392,183 - -0.2
3,392,183 - +0.5
3,392,183 - +0.4
3,392,183 - +0.8
3,392,183 - -1.3
3,392,186 + +1.2
3,392,186 + +0.1
3,392,187 - +0.1
3,392,187 - -0.6
3,392,187 - +0.4
3,392,202 + -0.3
3,392,202 + -1.1
3,392,202 + -0.3
3,392,202 + -1.1
3,392,202 + +1.1
3,392,202 + +0.1
3,392,202 + +0.5
3,392,202 + -0.1
3,392,203 - -1.1
3,392,215 - +0.8
3,392,298 + +0.2
3,392,298 + -0.7
3,392,298 + -0.5
3,392,298 + +1.5
3,392,298 + -0.4
3,392,298 + -0.2
3,392,298 + +0.4
3,392,298 + +0.5
3,392,298 + +0.8
3,392,298 + +0.1
3,392,298 + +0.2
3,392,299 - +1.6
3,392,299 - +0.7
3,392,299 - +0.8
3,392,299 - +0.5
3,392,299 - +1.5
3,392,299 - +1.4
3,392,299 - +0.7
3,392,299 - -0.8
3,392,299 - +0.9
3,392,299 - +0.5
3,392,299 - +2.4
3,392,299 - -0.4
3,392,318 - -0.3
3,392,532 - AO356_15005 0.29 +1.5
3,392,532 - AO356_15005 0.29 +0.1
3,392,565 + AO356_15005 0.33 +0.7
3,392,565 + AO356_15005 0.33 -0.1
3,392,565 + AO356_15005 0.33 +0.4
3,392,565 + AO356_15005 0.33 +0.1
3,392,565 + AO356_15005 0.33 +0.8
3,392,566 - AO356_15005 0.34 -1.2
3,392,566 - AO356_15005 0.34 +0.6
3,392,566 - AO356_15005 0.34 +0.3
3,392,598 + AO356_15005 0.38 +0.2
3,392,599 - AO356_15005 0.38 +0.1
3,392,599 - AO356_15005 0.38 +0.3
3,392,673 + AO356_15005 0.47 -0.2
3,392,673 + AO356_15005 0.47 -0.5
3,392,673 + AO356_15005 0.47 -0.2
3,392,673 + AO356_15005 0.47 -0.0
3,392,673 + AO356_15005 0.47 -0.6
3,392,673 + AO356_15005 0.47 +0.7
3,392,673 + AO356_15005 0.47 -0.8
3,392,673 + AO356_15005 0.47 +0.6
3,392,674 - AO356_15005 0.47 +0.4
3,392,674 - AO356_15005 0.47 +1.7
3,392,756 + AO356_15005 0.58 +0.7
3,392,757 - AO356_15005 0.58 +1.6

Or see this region's nucleotide sequence