Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12235

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12230 and AO356_12235 are separated by 12 nucleotidesAO356_12235 and AO356_12240 are separated by 18 nucleotides AO356_12230: AO356_12230 - type IV secretion protein Rhs, at 2,786,822 to 2,791,261 _12230 AO356_12235: AO356_12235 - hypothetical protein, at 2,791,274 to 2,791,708 _12235 AO356_12240: AO356_12240 - type VI secretion protein ImpA, at 2,791,727 to 2,793,664 _12240 Position (kb) 2791 2792Strain fitness (log2 ratio) -2 -1 0 1 2at 2790.279 kb on + strand, within AO356_12230at 2790.280 kb on - strand, within AO356_12230at 2790.280 kb on - strand, within AO356_12230at 2790.280 kb on - strand, within AO356_12230at 2790.280 kb on - strand, within AO356_12230at 2790.422 kb on - strand, within AO356_12230at 2790.469 kb on + strand, within AO356_12230at 2790.482 kb on - strand, within AO356_12230at 2790.614 kb on + strand, within AO356_12230at 2790.831 kb on + strandat 2790.831 kb on + strandat 2790.832 kb on - strandat 2790.832 kb on - strandat 2790.832 kb on - strandat 2791.004 kb on + strandat 2791.004 kb on + strandat 2791.004 kb on + strandat 2791.004 kb on + strandat 2791.004 kb on + strandat 2791.359 kb on + strand, within AO356_12235at 2791.359 kb on + strand, within AO356_12235at 2791.360 kb on - strand, within AO356_12235at 2791.360 kb on - strand, within AO356_12235at 2791.360 kb on - strand, within AO356_12235at 2791.701 kb on + strandat 2791.701 kb on + strandat 2791.872 kb on + strandat 2791.872 kb on + strandat 2791.872 kb on + strandat 2791.872 kb on + strandat 2791.873 kb on - strandat 2791.873 kb on - strandat 2791.886 kb on + strandat 2791.943 kb on + strand, within AO356_12240at 2791.943 kb on + strand, within AO356_12240at 2791.944 kb on - strand, within AO356_12240at 2791.944 kb on - strand, within AO356_12240at 2791.944 kb on - strand, within AO356_12240at 2791.944 kb on - strand, within AO356_12240at 2791.944 kb on - strand, within AO356_12240at 2791.977 kb on + strand, within AO356_12240at 2791.977 kb on + strand, within AO356_12240at 2792.150 kb on - strand, within AO356_12240at 2792.166 kb on + strand, within AO356_12240at 2792.166 kb on + strand, within AO356_12240at 2792.166 kb on + strand, within AO356_12240at 2792.166 kb on + strand, within AO356_12240at 2792.166 kb on + strand, within AO356_12240at 2792.166 kb on + strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.167 kb on - strand, within AO356_12240at 2792.307 kb on + strand, within AO356_12240at 2792.479 kb on - strand, within AO356_12240at 2792.543 kb on + strand, within AO356_12240at 2792.617 kb on + strand, within AO356_12240at 2792.688 kb on + strand, within AO356_12240at 2792.688 kb on + strand, within AO356_12240at 2792.688 kb on + strand, within AO356_12240at 2792.688 kb on + strand, within AO356_12240at 2792.688 kb on + strand, within AO356_12240at 2792.689 kb on - strand, within AO356_12240at 2792.689 kb on - strand, within AO356_12240at 2792.689 kb on - strand, within AO356_12240at 2792.689 kb on - strand, within AO356_12240at 2792.692 kb on - strand, within AO356_12240

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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2,790,279 + AO356_12230 0.78 +1.7
2,790,280 - AO356_12230 0.78 +0.1
2,790,280 - AO356_12230 0.78 -2.2
2,790,280 - AO356_12230 0.78 +0.6
2,790,280 - AO356_12230 0.78 +0.5
2,790,422 - AO356_12230 0.81 -0.4
2,790,469 + AO356_12230 0.82 -1.2
2,790,482 - AO356_12230 0.82 -0.7
2,790,614 + AO356_12230 0.85 -0.6
2,790,831 + +0.5
2,790,831 + +1.0
2,790,832 - -0.1
2,790,832 - +0.8
2,790,832 - -0.5
2,791,004 + -0.8
2,791,004 + +0.9
2,791,004 + -0.0
2,791,004 + -0.9
2,791,004 + +0.1
2,791,359 + AO356_12235 0.20 +0.1
2,791,359 + AO356_12235 0.20 +0.7
2,791,360 - AO356_12235 0.20 +1.0
2,791,360 - AO356_12235 0.20 +0.5
2,791,360 - AO356_12235 0.20 +0.6
2,791,701 + -0.6
2,791,701 + +2.3
2,791,872 + +2.0
2,791,872 + +0.8
2,791,872 + +0.6
2,791,872 + -0.3
2,791,873 - +0.1
2,791,873 - +0.3
2,791,886 + +1.5
2,791,943 + AO356_12240 0.11 -0.3
2,791,943 + AO356_12240 0.11 +0.7
2,791,944 - AO356_12240 0.11 -0.4
2,791,944 - AO356_12240 0.11 +0.3
2,791,944 - AO356_12240 0.11 +1.0
2,791,944 - AO356_12240 0.11 +0.9
2,791,944 - AO356_12240 0.11 +0.2
2,791,977 + AO356_12240 0.13 +0.2
2,791,977 + AO356_12240 0.13 +0.8
2,792,150 - AO356_12240 0.22 +1.1
2,792,166 + AO356_12240 0.23 +0.7
2,792,166 + AO356_12240 0.23 -0.4
2,792,166 + AO356_12240 0.23 +0.3
2,792,166 + AO356_12240 0.23 -0.7
2,792,166 + AO356_12240 0.23 +0.5
2,792,166 + AO356_12240 0.23 -1.0
2,792,167 - AO356_12240 0.23 +1.4
2,792,167 - AO356_12240 0.23 +1.8
2,792,167 - AO356_12240 0.23 -0.3
2,792,167 - AO356_12240 0.23 -0.9
2,792,167 - AO356_12240 0.23 -0.8
2,792,167 - AO356_12240 0.23 +0.0
2,792,167 - AO356_12240 0.23 +0.4
2,792,307 + AO356_12240 0.30 -0.2
2,792,479 - AO356_12240 0.39 +1.1
2,792,543 + AO356_12240 0.42 -0.7
2,792,617 + AO356_12240 0.46 +0.8
2,792,688 + AO356_12240 0.50 -0.1
2,792,688 + AO356_12240 0.50 +0.0
2,792,688 + AO356_12240 0.50 -2.0
2,792,688 + AO356_12240 0.50 -0.1
2,792,688 + AO356_12240 0.50 +0.0
2,792,689 - AO356_12240 0.50 -1.0
2,792,689 - AO356_12240 0.50 -0.4
2,792,689 - AO356_12240 0.50 +0.9
2,792,689 - AO356_12240 0.50 +0.5
2,792,692 - AO356_12240 0.50 +0.5

Or see this region's nucleotide sequence