Experiment: Chlorite 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_12230 and AO356_12235 are separated by 12 nucleotides AO356_12235 and AO356_12240 are separated by 18 nucleotides
AO356_12230: AO356_12230 - type IV secretion protein Rhs, at 2,786,822 to 2,791,261
_12230
AO356_12235: AO356_12235 - hypothetical protein, at 2,791,274 to 2,791,708
_12235
AO356_12240: AO356_12240 - type VI secretion protein ImpA, at 2,791,727 to 2,793,664
_12240
Position (kb)
2791
2792 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2790.279 kb on + strand, within AO356_12230 at 2790.280 kb on - strand, within AO356_12230 at 2790.280 kb on - strand, within AO356_12230 at 2790.280 kb on - strand, within AO356_12230 at 2790.280 kb on - strand, within AO356_12230 at 2790.422 kb on - strand, within AO356_12230 at 2790.469 kb on + strand, within AO356_12230 at 2790.482 kb on - strand, within AO356_12230 at 2790.614 kb on + strand, within AO356_12230 at 2790.831 kb on + strand at 2790.831 kb on + strand at 2790.832 kb on - strand at 2790.832 kb on - strand at 2790.832 kb on - strand at 2791.004 kb on + strand at 2791.004 kb on + strand at 2791.004 kb on + strand at 2791.004 kb on + strand at 2791.004 kb on + strand at 2791.359 kb on + strand, within AO356_12235 at 2791.359 kb on + strand, within AO356_12235 at 2791.360 kb on - strand, within AO356_12235 at 2791.360 kb on - strand, within AO356_12235 at 2791.360 kb on - strand, within AO356_12235 at 2791.701 kb on + strand at 2791.701 kb on + strand at 2791.872 kb on + strand at 2791.872 kb on + strand at 2791.872 kb on + strand at 2791.872 kb on + strand at 2791.873 kb on - strand at 2791.873 kb on - strand at 2791.886 kb on + strand at 2791.943 kb on + strand, within AO356_12240 at 2791.943 kb on + strand, within AO356_12240 at 2791.944 kb on - strand, within AO356_12240 at 2791.944 kb on - strand, within AO356_12240 at 2791.944 kb on - strand, within AO356_12240 at 2791.944 kb on - strand, within AO356_12240 at 2791.944 kb on - strand, within AO356_12240 at 2791.977 kb on + strand, within AO356_12240 at 2791.977 kb on + strand, within AO356_12240 at 2792.150 kb on - strand, within AO356_12240 at 2792.166 kb on + strand, within AO356_12240 at 2792.166 kb on + strand, within AO356_12240 at 2792.166 kb on + strand, within AO356_12240 at 2792.166 kb on + strand, within AO356_12240 at 2792.166 kb on + strand, within AO356_12240 at 2792.166 kb on + strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.167 kb on - strand, within AO356_12240 at 2792.307 kb on + strand, within AO356_12240 at 2792.479 kb on - strand, within AO356_12240 at 2792.543 kb on + strand, within AO356_12240 at 2792.617 kb on + strand, within AO356_12240 at 2792.688 kb on + strand, within AO356_12240 at 2792.688 kb on + strand, within AO356_12240 at 2792.688 kb on + strand, within AO356_12240 at 2792.688 kb on + strand, within AO356_12240 at 2792.688 kb on + strand, within AO356_12240 at 2792.689 kb on - strand, within AO356_12240 at 2792.689 kb on - strand, within AO356_12240 at 2792.689 kb on - strand, within AO356_12240 at 2792.689 kb on - strand, within AO356_12240 at 2792.692 kb on - strand, within AO356_12240
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.04 mM remove 2,790,279 + AO356_12230 0.78 +1.7 2,790,280 - AO356_12230 0.78 +0.1 2,790,280 - AO356_12230 0.78 -2.2 2,790,280 - AO356_12230 0.78 +0.6 2,790,280 - AO356_12230 0.78 +0.5 2,790,422 - AO356_12230 0.81 -0.4 2,790,469 + AO356_12230 0.82 -1.2 2,790,482 - AO356_12230 0.82 -0.7 2,790,614 + AO356_12230 0.85 -0.6 2,790,831 + +0.5 2,790,831 + +1.0 2,790,832 - -0.1 2,790,832 - +0.8 2,790,832 - -0.5 2,791,004 + -0.8 2,791,004 + +0.9 2,791,004 + -0.0 2,791,004 + -0.9 2,791,004 + +0.1 2,791,359 + AO356_12235 0.20 +0.1 2,791,359 + AO356_12235 0.20 +0.7 2,791,360 - AO356_12235 0.20 +1.0 2,791,360 - AO356_12235 0.20 +0.5 2,791,360 - AO356_12235 0.20 +0.6 2,791,701 + -0.6 2,791,701 + +2.3 2,791,872 + +2.0 2,791,872 + +0.8 2,791,872 + +0.6 2,791,872 + -0.3 2,791,873 - +0.1 2,791,873 - +0.3 2,791,886 + +1.5 2,791,943 + AO356_12240 0.11 -0.3 2,791,943 + AO356_12240 0.11 +0.7 2,791,944 - AO356_12240 0.11 -0.4 2,791,944 - AO356_12240 0.11 +0.3 2,791,944 - AO356_12240 0.11 +1.0 2,791,944 - AO356_12240 0.11 +0.9 2,791,944 - AO356_12240 0.11 +0.2 2,791,977 + AO356_12240 0.13 +0.2 2,791,977 + AO356_12240 0.13 +0.8 2,792,150 - AO356_12240 0.22 +1.1 2,792,166 + AO356_12240 0.23 +0.7 2,792,166 + AO356_12240 0.23 -0.4 2,792,166 + AO356_12240 0.23 +0.3 2,792,166 + AO356_12240 0.23 -0.7 2,792,166 + AO356_12240 0.23 +0.5 2,792,166 + AO356_12240 0.23 -1.0 2,792,167 - AO356_12240 0.23 +1.4 2,792,167 - AO356_12240 0.23 +1.8 2,792,167 - AO356_12240 0.23 -0.3 2,792,167 - AO356_12240 0.23 -0.9 2,792,167 - AO356_12240 0.23 -0.8 2,792,167 - AO356_12240 0.23 +0.0 2,792,167 - AO356_12240 0.23 +0.4 2,792,307 + AO356_12240 0.30 -0.2 2,792,479 - AO356_12240 0.39 +1.1 2,792,543 + AO356_12240 0.42 -0.7 2,792,617 + AO356_12240 0.46 +0.8 2,792,688 + AO356_12240 0.50 -0.1 2,792,688 + AO356_12240 0.50 +0.0 2,792,688 + AO356_12240 0.50 -2.0 2,792,688 + AO356_12240 0.50 -0.1 2,792,688 + AO356_12240 0.50 +0.0 2,792,689 - AO356_12240 0.50 -1.0 2,792,689 - AO356_12240 0.50 -0.4 2,792,689 - AO356_12240 0.50 +0.9 2,792,689 - AO356_12240 0.50 +0.5 2,792,692 - AO356_12240 0.50 +0.5
Or see this region's nucleotide sequence