Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10970

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10965 and AO356_10970 are separated by 277 nucleotidesAO356_10970 and AO356_10975 are separated by 191 nucleotides AO356_10965: AO356_10965 - aminopeptidase, at 2,492,164 to 2,493,255 _10965 AO356_10970: AO356_10970 - integration host factor, at 2,493,533 to 2,493,808 _10970 AO356_10975: AO356_10975 - pyridine nucleotide-disulfide oxidoreductase, at 2,494,000 to 2,495,148 _10975 Position (kb) 2493 2494Strain fitness (log2 ratio) -2 -1 0 1 2at 2492.552 kb on - strand, within AO356_10965at 2492.560 kb on + strand, within AO356_10965at 2492.563 kb on + strand, within AO356_10965at 2492.563 kb on + strand, within AO356_10965at 2492.563 kb on + strand, within AO356_10965at 2492.563 kb on + strand, within AO356_10965at 2492.564 kb on - strand, within AO356_10965at 2492.644 kb on + strand, within AO356_10965at 2492.644 kb on + strand, within AO356_10965at 2492.645 kb on - strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.752 kb on + strand, within AO356_10965at 2492.753 kb on - strand, within AO356_10965at 2492.753 kb on - strand, within AO356_10965at 2492.756 kb on + strand, within AO356_10965at 2492.756 kb on + strand, within AO356_10965at 2492.757 kb on - strand, within AO356_10965at 2492.926 kb on + strand, within AO356_10965at 2492.998 kb on + strand, within AO356_10965at 2492.998 kb on + strand, within AO356_10965at 2492.998 kb on + strand, within AO356_10965at 2492.998 kb on + strand, within AO356_10965at 2492.998 kb on + strand, within AO356_10965at 2492.998 kb on + strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2492.999 kb on - strand, within AO356_10965at 2493.040 kb on + strand, within AO356_10965at 2493.040 kb on + strand, within AO356_10965at 2493.040 kb on + strand, within AO356_10965at 2493.040 kb on + strand, within AO356_10965at 2493.041 kb on - strand, within AO356_10965at 2493.041 kb on - strand, within AO356_10965at 2493.055 kb on + strand, within AO356_10965at 2493.080 kb on + strand, within AO356_10965at 2493.081 kb on - strand, within AO356_10965at 2493.081 kb on - strand, within AO356_10965at 2493.081 kb on - strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.097 kb on + strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.098 kb on - strand, within AO356_10965at 2493.163 kb on + strandat 2493.163 kb on + strandat 2493.163 kb on + strandat 2493.163 kb on + strandat 2493.163 kb on + strandat 2493.163 kb on + strandat 2493.164 kb on - strandat 2493.164 kb on - strandat 2493.164 kb on - strandat 2493.164 kb on - strandat 2493.225 kb on - strandat 2493.225 kb on - strandat 2493.253 kb on + strandat 2493.302 kb on - strandat 2493.302 kb on - strandat 2493.331 kb on + strandat 2493.331 kb on + strandat 2493.332 kb on - strandat 2493.332 kb on - strandat 2493.332 kb on - strandat 2493.365 kb on + strandat 2493.365 kb on + strandat 2493.366 kb on - strandat 2493.482 kb on - strandat 2493.522 kb on - strandat 2493.522 kb on - strandat 2493.522 kb on - strandat 2493.528 kb on - strandat 2493.534 kb on + strandat 2493.534 kb on + strandat 2493.535 kb on - strandat 2493.802 kb on + strandat 2493.802 kb on + strandat 2493.803 kb on - strandat 2493.803 kb on - strandat 2493.803 kb on - strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.841 kb on + strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.842 kb on - strandat 2493.874 kb on - strandat 2493.891 kb on - strandat 2493.891 kb on - strandat 2493.891 kb on - strandat 2493.891 kb on - strandat 2493.891 kb on - strandat 2493.972 kb on - strandat 2493.972 kb on - strandat 2493.997 kb on + strandat 2493.997 kb on + strandat 2493.997 kb on + strandat 2493.998 kb on - strandat 2493.998 kb on - strandat 2493.998 kb on - strandat 2493.998 kb on - strandat 2494.198 kb on + strand, within AO356_10975at 2494.198 kb on + strand, within AO356_10975at 2494.204 kb on - strand, within AO356_10975at 2494.221 kb on - strand, within AO356_10975at 2494.221 kb on - strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.292 kb on + strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.293 kb on - strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.337 kb on + strand, within AO356_10975at 2494.338 kb on - strand, within AO356_10975at 2494.338 kb on - strand, within AO356_10975at 2494.338 kb on - strand, within AO356_10975at 2494.338 kb on - strand, within AO356_10975at 2494.338 kb on - strand, within AO356_10975at 2494.341 kb on + strand, within AO356_10975at 2494.341 kb on + strand, within AO356_10975at 2494.341 kb on + strand, within AO356_10975at 2494.342 kb on - strand, within AO356_10975at 2494.342 kb on - strand, within AO356_10975at 2494.342 kb on - strand, within AO356_10975at 2494.342 kb on - strand, within AO356_10975at 2494.342 kb on - strand, within AO356_10975at 2494.342 kb on - strand, within AO356_10975at 2494.642 kb on + strand, within AO356_10975at 2494.642 kb on + strand, within AO356_10975at 2494.642 kb on + strand, within AO356_10975at 2494.643 kb on - strand, within AO356_10975at 2494.643 kb on - strand, within AO356_10975at 2494.643 kb on - strand, within AO356_10975at 2494.751 kb on + strand, within AO356_10975at 2494.751 kb on + strand, within AO356_10975at 2494.752 kb on - strand, within AO356_10975

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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2,492,552 - AO356_10965 0.36 +0.9
2,492,560 + AO356_10965 0.36 +1.0
2,492,563 + AO356_10965 0.37 -0.7
2,492,563 + AO356_10965 0.37 +0.2
2,492,563 + AO356_10965 0.37 +0.4
2,492,563 + AO356_10965 0.37 +0.9
2,492,564 - AO356_10965 0.37 -0.0
2,492,644 + AO356_10965 0.44 +0.6
2,492,644 + AO356_10965 0.44 -1.4
2,492,645 - AO356_10965 0.44 +0.1
2,492,752 + AO356_10965 0.54 +0.1
2,492,752 + AO356_10965 0.54 +0.2
2,492,752 + AO356_10965 0.54 +0.1
2,492,752 + AO356_10965 0.54 -2.4
2,492,752 + AO356_10965 0.54 +1.0
2,492,752 + AO356_10965 0.54 -0.4
2,492,752 + AO356_10965 0.54 +1.3
2,492,753 - AO356_10965 0.54 +0.5
2,492,753 - AO356_10965 0.54 +0.2
2,492,756 + AO356_10965 0.54 -0.5
2,492,756 + AO356_10965 0.54 +0.9
2,492,757 - AO356_10965 0.54 +0.0
2,492,926 + AO356_10965 0.70 -1.0
2,492,998 + AO356_10965 0.76 +1.4
2,492,998 + AO356_10965 0.76 +0.0
2,492,998 + AO356_10965 0.76 -0.2
2,492,998 + AO356_10965 0.76 -1.3
2,492,998 + AO356_10965 0.76 +0.1
2,492,998 + AO356_10965 0.76 +0.5
2,492,999 - AO356_10965 0.76 -0.6
2,492,999 - AO356_10965 0.76 +0.6
2,492,999 - AO356_10965 0.76 +1.6
2,492,999 - AO356_10965 0.76 -0.0
2,492,999 - AO356_10965 0.76 +1.0
2,492,999 - AO356_10965 0.76 +0.9
2,492,999 - AO356_10965 0.76 +0.5
2,492,999 - AO356_10965 0.76 -0.6
2,493,040 + AO356_10965 0.80 +0.3
2,493,040 + AO356_10965 0.80 -0.6
2,493,040 + AO356_10965 0.80 +0.2
2,493,040 + AO356_10965 0.80 +1.3
2,493,041 - AO356_10965 0.80 +1.8
2,493,041 - AO356_10965 0.80 -0.0
2,493,055 + AO356_10965 0.82 +1.4
2,493,080 + AO356_10965 0.84 +0.4
2,493,081 - AO356_10965 0.84 -0.1
2,493,081 - AO356_10965 0.84 +0.4
2,493,081 - AO356_10965 0.84 +1.1
2,493,097 + AO356_10965 0.85 +0.1
2,493,097 + AO356_10965 0.85 +0.2
2,493,097 + AO356_10965 0.85 -0.4
2,493,097 + AO356_10965 0.85 +1.6
2,493,097 + AO356_10965 0.85 +0.1
2,493,097 + AO356_10965 0.85 +0.4
2,493,097 + AO356_10965 0.85 -1.6
2,493,097 + AO356_10965 0.85 -0.1
2,493,098 - AO356_10965 0.86 -0.5
2,493,098 - AO356_10965 0.86 -0.6
2,493,098 - AO356_10965 0.86 -0.5
2,493,098 - AO356_10965 0.86 -0.3
2,493,098 - AO356_10965 0.86 +1.0
2,493,098 - AO356_10965 0.86 +0.5
2,493,098 - AO356_10965 0.86 -0.4
2,493,163 + +0.4
2,493,163 + -0.2
2,493,163 + +1.2
2,493,163 + +0.0
2,493,163 + +0.0
2,493,163 + +0.4
2,493,164 - +1.7
2,493,164 - +0.5
2,493,164 - +2.0
2,493,164 - +1.7
2,493,225 - -0.3
2,493,225 - +0.8
2,493,253 + -1.8
2,493,302 - +0.1
2,493,302 - +1.2
2,493,331 + -0.8
2,493,331 + -1.1
2,493,332 - -0.1
2,493,332 - -0.4
2,493,332 - -1.5
2,493,365 + -0.7
2,493,365 + -1.6
2,493,366 - -1.2
2,493,482 - +0.1
2,493,522 - -0.9
2,493,522 - -0.6
2,493,522 - +0.3
2,493,528 - +2.3
2,493,534 + +1.3
2,493,534 + -0.6
2,493,535 - +0.1
2,493,802 + -0.1
2,493,802 + +0.8
2,493,803 - +0.0
2,493,803 - +0.3
2,493,803 - -0.9
2,493,841 + +0.3
2,493,841 + +0.9
2,493,841 + -1.1
2,493,841 + -0.1
2,493,841 + -0.5
2,493,841 + -0.9
2,493,841 + +0.8
2,493,841 + +0.5
2,493,841 + -0.3
2,493,841 + +1.0
2,493,841 + -0.8
2,493,841 + -1.8
2,493,841 + -0.5
2,493,841 + +0.1
2,493,841 + +0.7
2,493,841 + -0.6
2,493,842 - -0.6
2,493,842 - +0.6
2,493,842 - -0.3
2,493,842 - +0.4
2,493,842 - +0.5
2,493,842 - +0.9
2,493,842 - -1.2
2,493,842 - +0.9
2,493,842 - -0.5
2,493,842 - -0.4
2,493,842 - -0.3
2,493,842 - +0.4
2,493,874 - -0.6
2,493,891 - +1.1
2,493,891 - +1.3
2,493,891 - -0.2
2,493,891 - +0.0
2,493,891 - +1.8
2,493,972 - +0.4
2,493,972 - +0.2
2,493,997 + +0.2
2,493,997 + +1.4
2,493,997 + +0.7
2,493,998 - +0.4
2,493,998 - -1.0
2,493,998 - +0.4
2,493,998 - +1.2
2,494,198 + AO356_10975 0.17 +0.3
2,494,198 + AO356_10975 0.17 -0.6
2,494,204 - AO356_10975 0.18 +0.4
2,494,221 - AO356_10975 0.19 +0.2
2,494,221 - AO356_10975 0.19 +0.3
2,494,292 + AO356_10975 0.25 +0.1
2,494,292 + AO356_10975 0.25 +0.3
2,494,292 + AO356_10975 0.25 +0.9
2,494,292 + AO356_10975 0.25 +0.9
2,494,292 + AO356_10975 0.25 -0.5
2,494,292 + AO356_10975 0.25 -0.4
2,494,292 + AO356_10975 0.25 +0.1
2,494,292 + AO356_10975 0.25 +0.8
2,494,292 + AO356_10975 0.25 -0.5
2,494,292 + AO356_10975 0.25 -0.7
2,494,292 + AO356_10975 0.25 +1.1
2,494,292 + AO356_10975 0.25 -0.2
2,494,292 + AO356_10975 0.25 -0.6
2,494,292 + AO356_10975 0.25 +0.2
2,494,292 + AO356_10975 0.25 -0.4
2,494,292 + AO356_10975 0.25 -0.1
2,494,292 + AO356_10975 0.25 +0.7
2,494,293 - AO356_10975 0.26 -0.9
2,494,293 - AO356_10975 0.26 +0.2
2,494,293 - AO356_10975 0.26 -0.3
2,494,293 - AO356_10975 0.26 +0.2
2,494,293 - AO356_10975 0.26 -0.9
2,494,293 - AO356_10975 0.26 +1.1
2,494,293 - AO356_10975 0.26 +0.0
2,494,293 - AO356_10975 0.26 -0.4
2,494,293 - AO356_10975 0.26 +1.0
2,494,337 + AO356_10975 0.29 -0.0
2,494,337 + AO356_10975 0.29 +1.0
2,494,337 + AO356_10975 0.29 +0.4
2,494,337 + AO356_10975 0.29 -0.8
2,494,337 + AO356_10975 0.29 +0.3
2,494,337 + AO356_10975 0.29 -0.2
2,494,337 + AO356_10975 0.29 +1.0
2,494,337 + AO356_10975 0.29 +0.7
2,494,337 + AO356_10975 0.29 +0.2
2,494,337 + AO356_10975 0.29 +0.9
2,494,338 - AO356_10975 0.29 +0.5
2,494,338 - AO356_10975 0.29 +0.4
2,494,338 - AO356_10975 0.29 -0.2
2,494,338 - AO356_10975 0.29 -1.6
2,494,338 - AO356_10975 0.29 -0.2
2,494,341 + AO356_10975 0.30 +0.7
2,494,341 + AO356_10975 0.30 +0.7
2,494,341 + AO356_10975 0.30 -0.9
2,494,342 - AO356_10975 0.30 -0.9
2,494,342 - AO356_10975 0.30 +1.2
2,494,342 - AO356_10975 0.30 -0.5
2,494,342 - AO356_10975 0.30 -0.7
2,494,342 - AO356_10975 0.30 +0.1
2,494,342 - AO356_10975 0.30 +0.3
2,494,642 + AO356_10975 0.56 -0.0
2,494,642 + AO356_10975 0.56 +0.5
2,494,642 + AO356_10975 0.56 -1.0
2,494,643 - AO356_10975 0.56 -0.8
2,494,643 - AO356_10975 0.56 -0.2
2,494,643 - AO356_10975 0.56 -1.1
2,494,751 + AO356_10975 0.65 -1.9
2,494,751 + AO356_10975 0.65 -1.3
2,494,752 - AO356_10975 0.65 -0.2

Or see this region's nucleotide sequence