Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09750

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09745 and AO356_09750 are separated by 76 nucleotidesAO356_09750 and AO356_09755 are separated by 203 nucleotidesAO356_09755 and AO356_09760 are separated by 39 nucleotidesAO356_09760 and AO356_09765 are separated by 1 nucleotides AO356_09745: AO356_09745 - hypothetical protein, at 2,211,657 to 2,212,019 _09745 AO356_09750: AO356_09750 - rRNA methylase, at 2,212,096 to 2,212,551 _09750 AO356_09755: AO356_09755 - preprotein translocase subunit SecB, at 2,212,755 to 2,213,237 _09755 AO356_09760: AO356_09760 - glutaredoxin, at 2,213,277 to 2,213,531 _09760 AO356_09765: AO356_09765 - sulfurtransferase, at 2,213,533 to 2,213,946 _09765 Position (kb) 2212 2213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2211.140 kb on + strandat 2211.140 kb on + strandat 2211.266 kb on + strandat 2211.267 kb on - strandat 2211.399 kb on + strandat 2211.451 kb on + strandat 2211.452 kb on - strandat 2211.452 kb on - strandat 2211.452 kb on - strandat 2211.456 kb on - strandat 2211.456 kb on - strandat 2211.485 kb on + strandat 2211.485 kb on + strandat 2211.486 kb on - strandat 2211.512 kb on + strandat 2211.512 kb on + strandat 2211.512 kb on + strandat 2211.513 kb on - strandat 2211.552 kb on + strandat 2211.553 kb on - strandat 2211.579 kb on + strandat 2211.579 kb on + strandat 2211.579 kb on + strandat 2211.600 kb on - strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2212.032 kb on + strandat 2212.032 kb on + strandat 2212.032 kb on + strandat 2212.033 kb on - strandat 2212.033 kb on - strandat 2212.033 kb on - strandat 2212.033 kb on - strandat 2212.033 kb on - strandat 2212.033 kb on - strandat 2212.033 kb on - strandat 2212.061 kb on + strandat 2212.061 kb on + strandat 2212.061 kb on + strandat 2212.061 kb on + strandat 2212.062 kb on - strandat 2212.062 kb on - strandat 2212.079 kb on + strandat 2212.080 kb on - strandat 2212.080 kb on - strandat 2212.080 kb on - strandat 2212.080 kb on - strandat 2212.080 kb on - strandat 2212.247 kb on - strand, within AO356_09750at 2212.255 kb on + strand, within AO356_09750at 2212.255 kb on + strand, within AO356_09750at 2212.255 kb on + strand, within AO356_09750at 2212.255 kb on + strand, within AO356_09750at 2212.255 kb on + strand, within AO356_09750at 2212.256 kb on - strand, within AO356_09750at 2212.256 kb on - strand, within AO356_09750at 2212.256 kb on - strand, within AO356_09750at 2212.329 kb on + strand, within AO356_09750at 2212.329 kb on + strand, within AO356_09750at 2212.330 kb on - strand, within AO356_09750at 2212.425 kb on - strand, within AO356_09750at 2212.501 kb on - strand, within AO356_09750at 2212.501 kb on - strand, within AO356_09750at 2212.519 kb on + strandat 2212.520 kb on - strandat 2212.520 kb on - strandat 2212.737 kb on - strandat 2212.737 kb on - strandat 2212.749 kb on - strandat 2212.749 kb on - strandat 2212.749 kb on - strandat 2212.757 kb on - strandat 2212.807 kb on + strand, within AO356_09755at 2212.808 kb on - strand, within AO356_09755at 2213.097 kb on + strand, within AO356_09755at 2213.098 kb on - strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.251 kb on + strandat 2213.251 kb on + strandat 2213.252 kb on - strandat 2213.252 kb on - strandat 2213.266 kb on + strandat 2213.492 kb on - strand, within AO356_09760at 2213.492 kb on - strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.501 kb on - strand, within AO356_09760at 2213.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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2,211,140 + +0.1
2,211,140 + -0.9
2,211,266 + +0.5
2,211,267 - -0.4
2,211,399 + +0.7
2,211,451 + -0.2
2,211,452 - -0.5
2,211,452 - -0.2
2,211,452 - -0.2
2,211,456 - +0.5
2,211,456 - +1.2
2,211,485 + +0.7
2,211,485 + -0.4
2,211,486 - -0.4
2,211,512 + -0.6
2,211,512 + -0.1
2,211,512 + +0.5
2,211,513 - -0.5
2,211,552 + -0.2
2,211,553 - -0.0
2,211,579 + +1.1
2,211,579 + +1.0
2,211,579 + -1.3
2,211,600 - -0.2
2,211,658 + -0.6
2,211,658 + -0.0
2,211,658 + +0.8
2,211,658 + +0.4
2,211,658 + -0.4
2,211,658 + -1.4
2,211,659 - +0.1
2,211,659 - +0.6
2,211,659 - +0.1
2,211,659 - +0.9
2,211,659 - +0.0
2,211,659 - +1.5
2,211,659 - +0.4
2,212,032 + +0.2
2,212,032 + -0.8
2,212,032 + +0.3
2,212,033 - +0.8
2,212,033 - +1.1
2,212,033 - -0.2
2,212,033 - -0.7
2,212,033 - +0.2
2,212,033 - -0.0
2,212,033 - -1.1
2,212,061 + -1.2
2,212,061 + +0.1
2,212,061 + +0.3
2,212,061 + -0.0
2,212,062 - +0.9
2,212,062 - -0.1
2,212,079 + +3.7
2,212,080 - +0.3
2,212,080 - +0.5
2,212,080 - +0.4
2,212,080 - -1.9
2,212,080 - +0.7
2,212,247 - AO356_09750 0.33 +0.7
2,212,255 + AO356_09750 0.35 -0.3
2,212,255 + AO356_09750 0.35 +0.8
2,212,255 + AO356_09750 0.35 -0.4
2,212,255 + AO356_09750 0.35 +0.3
2,212,255 + AO356_09750 0.35 +0.9
2,212,256 - AO356_09750 0.35 -0.2
2,212,256 - AO356_09750 0.35 -1.3
2,212,256 - AO356_09750 0.35 +0.2
2,212,329 + AO356_09750 0.51 +0.8
2,212,329 + AO356_09750 0.51 +0.1
2,212,330 - AO356_09750 0.51 +0.6
2,212,425 - AO356_09750 0.72 -0.6
2,212,501 - AO356_09750 0.89 -1.0
2,212,501 - AO356_09750 0.89 +0.2
2,212,519 + +0.1
2,212,520 - -0.2
2,212,520 - +0.8
2,212,737 - +0.3
2,212,737 - -0.8
2,212,749 - +0.1
2,212,749 - -0.8
2,212,749 - +0.2
2,212,757 - +0.0
2,212,807 + AO356_09755 0.11 +0.6
2,212,808 - AO356_09755 0.11 +0.4
2,213,097 + AO356_09755 0.71 -1.4
2,213,098 - AO356_09755 0.71 +1.1
2,213,167 + AO356_09755 0.85 -0.6
2,213,167 + AO356_09755 0.85 -0.0
2,213,167 + AO356_09755 0.85 +0.1
2,213,167 + AO356_09755 0.85 -0.3
2,213,167 + AO356_09755 0.85 +1.3
2,213,167 + AO356_09755 0.85 +0.3
2,213,167 + AO356_09755 0.85 -0.4
2,213,167 + AO356_09755 0.85 -0.7
2,213,168 - AO356_09755 0.86 -0.3
2,213,168 - AO356_09755 0.86 -0.1
2,213,168 - AO356_09755 0.86 -0.8
2,213,168 - AO356_09755 0.86 -1.2
2,213,251 + +0.2
2,213,251 + +0.8
2,213,252 - +0.1
2,213,252 - +0.5
2,213,266 + +0.4
2,213,492 - AO356_09760 0.84 -0.4
2,213,492 - AO356_09760 0.84 +0.9
2,213,500 + AO356_09760 0.87 -1.2
2,213,500 + AO356_09760 0.87 +0.5
2,213,500 + AO356_09760 0.87 +0.3
2,213,500 + AO356_09760 0.87 +0.3
2,213,501 - AO356_09760 0.88 -0.1
2,213,512 + -0.4

Or see this region's nucleotide sequence