Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08800

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08790 and AO356_08795 overlap by 10 nucleotidesAO356_08795 and AO356_08800 are separated by 214 nucleotidesAO356_08800 and AO356_08805 overlap by 32 nucleotides AO356_08790: AO356_08790 - cytoplasmic protein, at 1,981,646 to 1,982,098 _08790 AO356_08795: AO356_08795 - ADP-ribose pyrophosphatase, at 1,982,089 to 1,982,706 _08795 AO356_08800: AO356_08800 - hypothetical protein, at 1,982,921 to 1,983,664 _08800 AO356_08805: AO356_08805 - nitrate reductase, at 1,983,633 to 1,984,925 _08805 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -2 -1 0 1 2at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.026 kb on - strand, within AO356_08790at 1982.026 kb on - strand, within AO356_08790at 1982.098 kb on + strandat 1982.099 kb on - strandat 1982.166 kb on + strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.296 kb on + strand, within AO356_08795at 1982.330 kb on + strand, within AO356_08795at 1982.331 kb on - strand, within AO356_08795at 1982.331 kb on - strand, within AO356_08795at 1982.631 kb on + strand, within AO356_08795at 1982.631 kb on + strand, within AO356_08795at 1982.631 kb on + strand, within AO356_08795at 1982.633 kb on + strand, within AO356_08795at 1982.633 kb on + strand, within AO356_08795at 1982.633 kb on + strand, within AO356_08795at 1982.633 kb on + strand, within AO356_08795at 1982.633 kb on + strand, within AO356_08795at 1982.633 kb on + strand, within AO356_08795at 1982.634 kb on - strand, within AO356_08795at 1982.634 kb on - strand, within AO356_08795at 1982.634 kb on - strand, within AO356_08795at 1982.634 kb on - strand, within AO356_08795at 1982.634 kb on - strand, within AO356_08795at 1982.634 kb on - strand, within AO356_08795at 1982.733 kb on + strandat 1982.733 kb on + strandat 1982.733 kb on + strandat 1982.733 kb on + strandat 1982.733 kb on + strandat 1982.733 kb on + strandat 1982.734 kb on - strandat 1982.766 kb on - strandat 1982.766 kb on - strandat 1982.766 kb on - strandat 1982.766 kb on - strandat 1982.776 kb on + strandat 1982.836 kb on + strandat 1982.836 kb on + strandat 1982.836 kb on + strandat 1982.836 kb on + strandat 1982.836 kb on + strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.837 kb on - strandat 1982.839 kb on + strandat 1982.845 kb on + strandat 1982.846 kb on - strandat 1982.999 kb on + strand, within AO356_08800at 1982.999 kb on + strand, within AO356_08800at 1982.999 kb on + strand, within AO356_08800at 1983.000 kb on - strand, within AO356_08800at 1983.239 kb on + strand, within AO356_08800at 1983.239 kb on + strand, within AO356_08800at 1983.240 kb on - strand, within AO356_08800at 1983.240 kb on - strand, within AO356_08800at 1983.240 kb on - strand, within AO356_08800at 1983.240 kb on - strand, within AO356_08800at 1983.240 kb on - strand, within AO356_08800at 1983.256 kb on - strand, within AO356_08800at 1983.256 kb on - strand, within AO356_08800at 1983.256 kb on - strand, within AO356_08800at 1983.299 kb on + strand, within AO356_08800at 1983.299 kb on + strand, within AO356_08800at 1983.299 kb on + strand, within AO356_08800at 1983.350 kb on + strand, within AO356_08800at 1983.350 kb on + strand, within AO356_08800at 1983.351 kb on - strand, within AO356_08800at 1983.533 kb on + strand, within AO356_08800at 1983.534 kb on - strand, within AO356_08800at 1983.534 kb on - strand, within AO356_08800at 1983.554 kb on + strand, within AO356_08800at 1983.554 kb on + strand, within AO356_08800at 1983.554 kb on + strand, within AO356_08800at 1983.555 kb on - strand, within AO356_08800at 1983.757 kb on + strandat 1983.757 kb on + strandat 1983.757 kb on + strandat 1983.758 kb on - strandat 1983.758 kb on - strandat 1983.758 kb on - strandat 1983.758 kb on - strandat 1983.758 kb on - strandat 1983.758 kb on - strandat 1983.913 kb on + strand, within AO356_08805at 1983.913 kb on + strand, within AO356_08805at 1984.150 kb on + strand, within AO356_08805at 1984.150 kb on + strand, within AO356_08805at 1984.151 kb on - strand, within AO356_08805at 1984.151 kb on - strand, within AO356_08805at 1984.247 kb on - strand, within AO356_08805at 1984.287 kb on - strand, within AO356_08805

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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1,982,025 + AO356_08790 0.84 -0.6
1,982,025 + AO356_08790 0.84 +0.3
1,982,025 + AO356_08790 0.84 +0.0
1,982,025 + AO356_08790 0.84 -0.5
1,982,025 + AO356_08790 0.84 -0.7
1,982,025 + AO356_08790 0.84 -1.0
1,982,026 - AO356_08790 0.84 -1.0
1,982,026 - AO356_08790 0.84 -0.3
1,982,098 + +1.2
1,982,099 - -0.7
1,982,166 + AO356_08795 0.12 +0.2
1,982,167 - AO356_08795 0.13 +0.5
1,982,167 - AO356_08795 0.13 -0.1
1,982,167 - AO356_08795 0.13 +0.6
1,982,167 - AO356_08795 0.13 +0.2
1,982,167 - AO356_08795 0.13 +1.3
1,982,167 - AO356_08795 0.13 -0.5
1,982,167 - AO356_08795 0.13 +1.3
1,982,167 - AO356_08795 0.13 +0.2
1,982,296 + AO356_08795 0.33 -0.1
1,982,330 + AO356_08795 0.39 -0.6
1,982,331 - AO356_08795 0.39 +0.3
1,982,331 - AO356_08795 0.39 +0.9
1,982,631 + AO356_08795 0.88 -0.3
1,982,631 + AO356_08795 0.88 -0.0
1,982,631 + AO356_08795 0.88 -0.3
1,982,633 + AO356_08795 0.88 +0.1
1,982,633 + AO356_08795 0.88 +1.4
1,982,633 + AO356_08795 0.88 -0.3
1,982,633 + AO356_08795 0.88 -1.0
1,982,633 + AO356_08795 0.88 -0.2
1,982,633 + AO356_08795 0.88 +0.6
1,982,634 - AO356_08795 0.88 -0.5
1,982,634 - AO356_08795 0.88 -1.5
1,982,634 - AO356_08795 0.88 -0.3
1,982,634 - AO356_08795 0.88 -0.3
1,982,634 - AO356_08795 0.88 +0.9
1,982,634 - AO356_08795 0.88 +0.1
1,982,733 + +0.1
1,982,733 + +0.9
1,982,733 + -0.3
1,982,733 + +0.9
1,982,733 + -0.6
1,982,733 + +0.1
1,982,734 - +0.8
1,982,766 - -0.7
1,982,766 - -0.4
1,982,766 - +0.6
1,982,766 - +0.4
1,982,776 + -0.8
1,982,836 + -0.2
1,982,836 + +0.6
1,982,836 + -2.4
1,982,836 + +0.6
1,982,836 + +0.5
1,982,837 - +0.5
1,982,837 - +0.9
1,982,837 - -0.3
1,982,837 - +0.1
1,982,837 - +0.1
1,982,837 - +0.5
1,982,837 - -1.1
1,982,837 - +0.5
1,982,839 + -0.9
1,982,845 + +0.5
1,982,846 - -0.6
1,982,999 + AO356_08800 0.10 +0.2
1,982,999 + AO356_08800 0.10 +0.9
1,982,999 + AO356_08800 0.10 +0.4
1,983,000 - AO356_08800 0.11 -0.7
1,983,239 + AO356_08800 0.43 +0.9
1,983,239 + AO356_08800 0.43 +0.4
1,983,240 - AO356_08800 0.43 +1.4
1,983,240 - AO356_08800 0.43 -1.1
1,983,240 - AO356_08800 0.43 +0.1
1,983,240 - AO356_08800 0.43 +0.8
1,983,240 - AO356_08800 0.43 -0.8
1,983,256 - AO356_08800 0.45 -0.3
1,983,256 - AO356_08800 0.45 +0.4
1,983,256 - AO356_08800 0.45 +1.4
1,983,299 + AO356_08800 0.51 +1.8
1,983,299 + AO356_08800 0.51 +1.9
1,983,299 + AO356_08800 0.51 +0.7
1,983,350 + AO356_08800 0.58 +0.7
1,983,350 + AO356_08800 0.58 +0.3
1,983,351 - AO356_08800 0.58 -0.3
1,983,533 + AO356_08800 0.82 +1.2
1,983,534 - AO356_08800 0.82 +0.6
1,983,534 - AO356_08800 0.82 +0.1
1,983,554 + AO356_08800 0.85 +0.2
1,983,554 + AO356_08800 0.85 +1.5
1,983,554 + AO356_08800 0.85 -0.3
1,983,555 - AO356_08800 0.85 +1.3
1,983,757 + +0.5
1,983,757 + +0.2
1,983,757 + +0.1
1,983,758 - -0.5
1,983,758 - +0.5
1,983,758 - -1.4
1,983,758 - +0.3
1,983,758 - -0.3
1,983,758 - +1.2
1,983,913 + AO356_08805 0.22 -0.1
1,983,913 + AO356_08805 0.22 -1.3
1,984,150 + AO356_08805 0.40 -2.0
1,984,150 + AO356_08805 0.40 +1.2
1,984,151 - AO356_08805 0.40 -0.3
1,984,151 - AO356_08805 0.40 +0.2
1,984,247 - AO356_08805 0.47 +0.6
1,984,287 - AO356_08805 0.51 +0.2

Or see this region's nucleotide sequence