Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06830

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06820 and AO356_06825 are separated by 108 nucleotidesAO356_06825 and AO356_06830 are separated by 182 nucleotidesAO356_06830 and AO356_06835 are separated by 200 nucleotides AO356_06820: AO356_06820 - arylsulfatase, at 1,506,764 to 1,507,417 _06820 AO356_06825: AO356_06825 - lactoylglutathione lyase, at 1,507,526 to 1,507,942 _06825 AO356_06830: AO356_06830 - hypothetical protein, at 1,508,125 to 1,509,174 _06830 AO356_06835: AO356_06835 - GntR family transcriptional regulator, at 1,509,375 to 1,510,088 _06835 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -1 0 1 2at 1507.220 kb on + strand, within AO356_06820at 1507.220 kb on + strand, within AO356_06820at 1507.220 kb on + strand, within AO356_06820at 1507.220 kb on + strand, within AO356_06820at 1507.220 kb on + strand, within AO356_06820at 1507.228 kb on - strand, within AO356_06820at 1507.228 kb on - strand, within AO356_06820at 1507.241 kb on - strand, within AO356_06820at 1507.241 kb on - strand, within AO356_06820at 1507.241 kb on - strand, within AO356_06820at 1507.396 kb on + strandat 1507.421 kb on + strandat 1507.421 kb on + strandat 1507.421 kb on + strandat 1507.421 kb on + strandat 1507.421 kb on + strandat 1507.422 kb on - strandat 1507.422 kb on - strandat 1507.493 kb on + strandat 1507.525 kb on + strandat 1507.572 kb on + strand, within AO356_06825at 1507.572 kb on + strand, within AO356_06825at 1507.573 kb on - strand, within AO356_06825at 1507.601 kb on + strand, within AO356_06825at 1507.601 kb on + strand, within AO356_06825at 1507.602 kb on - strand, within AO356_06825at 1507.647 kb on + strand, within AO356_06825at 1507.647 kb on + strand, within AO356_06825at 1507.648 kb on - strand, within AO356_06825at 1507.648 kb on - strand, within AO356_06825at 1507.648 kb on - strand, within AO356_06825at 1507.648 kb on - strand, within AO356_06825at 1507.884 kb on - strand, within AO356_06825at 1507.884 kb on - strand, within AO356_06825at 1507.993 kb on + strandat 1507.993 kb on + strandat 1507.993 kb on + strandat 1508.181 kb on - strandat 1508.181 kb on - strandat 1508.181 kb on - strandat 1508.181 kb on - strandat 1508.262 kb on + strand, within AO356_06830at 1508.284 kb on + strand, within AO356_06830at 1508.285 kb on - strand, within AO356_06830at 1508.285 kb on - strand, within AO356_06830at 1508.438 kb on - strand, within AO356_06830at 1508.715 kb on + strand, within AO356_06830at 1508.716 kb on - strand, within AO356_06830at 1508.770 kb on + strand, within AO356_06830at 1508.770 kb on + strand, within AO356_06830at 1508.770 kb on + strand, within AO356_06830at 1508.771 kb on - strand, within AO356_06830at 1508.771 kb on - strand, within AO356_06830at 1508.842 kb on + strand, within AO356_06830at 1508.842 kb on + strand, within AO356_06830at 1508.932 kb on + strand, within AO356_06830at 1508.933 kb on - strand, within AO356_06830at 1508.933 kb on - strand, within AO356_06830at 1509.052 kb on + strand, within AO356_06830at 1509.052 kb on + strand, within AO356_06830at 1509.053 kb on - strand, within AO356_06830at 1509.053 kb on - strand, within AO356_06830at 1509.053 kb on - strand, within AO356_06830at 1509.090 kb on - strandat 1509.172 kb on + strandat 1509.172 kb on + strandat 1509.173 kb on - strandat 1509.173 kb on - strandat 1509.238 kb on - strandat 1509.377 kb on - strandat 1509.419 kb on + strandat 1509.420 kb on - strandat 1509.420 kb on - strandat 1509.420 kb on - strandat 1509.485 kb on - strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.805 kb on + strand, within AO356_06835at 1509.805 kb on + strand, within AO356_06835at 1509.805 kb on + strand, within AO356_06835at 1509.806 kb on - strand, within AO356_06835at 1509.806 kb on - strand, within AO356_06835at 1509.872 kb on + strand, within AO356_06835at 1509.984 kb on + strand, within AO356_06835at 1509.984 kb on + strand, within AO356_06835at 1510.095 kb on + strandat 1510.096 kb on - strandat 1510.124 kb on + strandat 1510.125 kb on - strandat 1510.126 kb on + strandat 1510.127 kb on - strandat 1510.127 kb on - strandat 1510.153 kb on + strandat 1510.153 kb on + strandat 1510.153 kb on + strandat 1510.154 kb on - strandat 1510.155 kb on + strandat 1510.155 kb on + strandat 1510.155 kb on + strandat 1510.156 kb on - strandat 1510.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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1,507,220 + AO356_06820 0.70 +0.1
1,507,220 + AO356_06820 0.70 +0.3
1,507,220 + AO356_06820 0.70 -0.4
1,507,220 + AO356_06820 0.70 -1.0
1,507,220 + AO356_06820 0.70 -1.5
1,507,228 - AO356_06820 0.71 +0.4
1,507,228 - AO356_06820 0.71 -0.4
1,507,241 - AO356_06820 0.73 +1.2
1,507,241 - AO356_06820 0.73 +0.4
1,507,241 - AO356_06820 0.73 -0.6
1,507,396 + +0.0
1,507,421 + +1.2
1,507,421 + -0.4
1,507,421 + +1.5
1,507,421 + +0.6
1,507,421 + +0.5
1,507,422 - +0.7
1,507,422 - +0.0
1,507,493 + +0.7
1,507,525 + +0.1
1,507,572 + AO356_06825 0.11 +1.6
1,507,572 + AO356_06825 0.11 +1.5
1,507,573 - AO356_06825 0.11 +0.4
1,507,601 + AO356_06825 0.18 +1.0
1,507,601 + AO356_06825 0.18 +0.4
1,507,602 - AO356_06825 0.18 +0.4
1,507,647 + AO356_06825 0.29 +0.7
1,507,647 + AO356_06825 0.29 +1.4
1,507,648 - AO356_06825 0.29 +0.8
1,507,648 - AO356_06825 0.29 -0.9
1,507,648 - AO356_06825 0.29 -0.5
1,507,648 - AO356_06825 0.29 +0.8
1,507,884 - AO356_06825 0.86 +0.5
1,507,884 - AO356_06825 0.86 +0.7
1,507,993 + -1.0
1,507,993 + -0.1
1,507,993 + -0.3
1,508,181 - +0.4
1,508,181 - -1.2
1,508,181 - +0.8
1,508,181 - -0.4
1,508,262 + AO356_06830 0.13 +0.1
1,508,284 + AO356_06830 0.15 -0.1
1,508,285 - AO356_06830 0.15 +0.0
1,508,285 - AO356_06830 0.15 -0.1
1,508,438 - AO356_06830 0.30 +1.0
1,508,715 + AO356_06830 0.56 +0.9
1,508,716 - AO356_06830 0.56 +0.2
1,508,770 + AO356_06830 0.61 -0.2
1,508,770 + AO356_06830 0.61 -1.4
1,508,770 + AO356_06830 0.61 -0.2
1,508,771 - AO356_06830 0.62 +0.2
1,508,771 - AO356_06830 0.62 -0.6
1,508,842 + AO356_06830 0.68 +0.7
1,508,842 + AO356_06830 0.68 +0.9
1,508,932 + AO356_06830 0.77 +0.3
1,508,933 - AO356_06830 0.77 +0.2
1,508,933 - AO356_06830 0.77 -0.7
1,509,052 + AO356_06830 0.88 +0.2
1,509,052 + AO356_06830 0.88 -0.3
1,509,053 - AO356_06830 0.88 +0.8
1,509,053 - AO356_06830 0.88 -0.5
1,509,053 - AO356_06830 0.88 +0.6
1,509,090 - +2.3
1,509,172 + -0.7
1,509,172 + +0.8
1,509,173 - -0.1
1,509,173 - +1.0
1,509,238 - -0.0
1,509,377 - +0.4
1,509,419 + -0.5
1,509,420 - -0.7
1,509,420 - -0.0
1,509,420 - -0.2
1,509,485 - AO356_06835 0.15 +0.6
1,509,569 + AO356_06835 0.27 -0.6
1,509,569 + AO356_06835 0.27 +0.5
1,509,569 + AO356_06835 0.27 +1.0
1,509,569 + AO356_06835 0.27 +0.6
1,509,805 + AO356_06835 0.60 +0.0
1,509,805 + AO356_06835 0.60 +0.1
1,509,805 + AO356_06835 0.60 +0.2
1,509,806 - AO356_06835 0.60 -0.8
1,509,806 - AO356_06835 0.60 +0.5
1,509,872 + AO356_06835 0.70 -0.2
1,509,984 + AO356_06835 0.85 +0.5
1,509,984 + AO356_06835 0.85 +0.2
1,510,095 + +0.9
1,510,096 - +0.5
1,510,124 + +0.1
1,510,125 - +1.0
1,510,126 + +1.2
1,510,127 - -1.0
1,510,127 - -0.4
1,510,153 + +0.3
1,510,153 + -0.3
1,510,153 + +0.6
1,510,154 - +0.1
1,510,155 + +0.1
1,510,155 + +0.0
1,510,155 + -0.0
1,510,156 - -1.3
1,510,156 - -1.6

Or see this region's nucleotide sequence