Experiment: Chlorite 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06785 and AO356_06790 overlap by 17 nucleotides AO356_06790 and AO356_06795 are separated by 1 nucleotides
AO356_06785: AO356_06785 - diguanylate cyclase, at 1,496,621 to 1,497,706
_06785
AO356_06790: AO356_06790 - TonB-dependent receptor, at 1,497,690 to 1,500,041
_06790
AO356_06795: AO356_06795 - histidine kinase, at 1,500,043 to 1,502,430
_06795
Position (kb)
1497
1498
1499
1500
1501 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1496.803 kb on - strand, within AO356_06785 at 1496.931 kb on + strand, within AO356_06785 at 1496.932 kb on - strand, within AO356_06785 at 1496.932 kb on - strand, within AO356_06785 at 1497.049 kb on + strand, within AO356_06785 at 1497.049 kb on + strand, within AO356_06785 at 1497.049 kb on + strand, within AO356_06785 at 1497.050 kb on - strand, within AO356_06785 at 1497.050 kb on - strand, within AO356_06785 at 1497.050 kb on - strand, within AO356_06785 at 1497.122 kb on + strand, within AO356_06785 at 1497.122 kb on + strand, within AO356_06785 at 1497.122 kb on + strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.123 kb on - strand, within AO356_06785 at 1497.172 kb on - strand, within AO356_06785 at 1497.332 kb on + strand, within AO356_06785 at 1497.332 kb on + strand, within AO356_06785 at 1497.332 kb on + strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.333 kb on - strand, within AO356_06785 at 1497.406 kb on + strand, within AO356_06785 at 1497.406 kb on + strand, within AO356_06785 at 1497.407 kb on - strand, within AO356_06785 at 1497.629 kb on + strand at 1497.629 kb on + strand at 1497.630 kb on - strand at 1497.630 kb on - strand at 1497.630 kb on - strand at 1497.630 kb on - strand at 1497.695 kb on - strand at 1497.748 kb on + strand at 1497.749 kb on - strand at 1497.772 kb on + strand at 1497.772 kb on + strand at 1497.772 kb on + strand at 1497.773 kb on - strand at 1497.787 kb on + strand at 1497.787 kb on + strand at 1497.788 kb on - strand at 1497.788 kb on - strand at 1497.788 kb on - strand at 1497.788 kb on - strand at 1497.889 kb on + strand at 1497.889 kb on + strand at 1497.889 kb on + strand at 1497.889 kb on + strand at 1497.890 kb on - strand at 1497.890 kb on - strand at 1497.890 kb on - strand at 1497.890 kb on - strand at 1497.890 kb on - strand at 1497.923 kb on - strand at 1497.940 kb on + strand, within AO356_06790 at 1497.955 kb on + strand, within AO356_06790 at 1497.970 kb on + strand, within AO356_06790 at 1497.971 kb on - strand, within AO356_06790 at 1498.027 kb on + strand, within AO356_06790 at 1498.028 kb on - strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.255 kb on + strand, within AO356_06790 at 1498.256 kb on - strand, within AO356_06790 at 1498.256 kb on - strand, within AO356_06790 at 1498.256 kb on - strand, within AO356_06790 at 1498.270 kb on + strand, within AO356_06790 at 1498.271 kb on - strand, within AO356_06790 at 1498.292 kb on - strand, within AO356_06790 at 1498.429 kb on + strand, within AO356_06790 at 1498.450 kb on + strand, within AO356_06790 at 1498.450 kb on + strand, within AO356_06790 at 1498.451 kb on - strand, within AO356_06790 at 1498.451 kb on - strand, within AO356_06790 at 1498.516 kb on - strand, within AO356_06790 at 1498.534 kb on + strand, within AO356_06790 at 1498.534 kb on + strand, within AO356_06790 at 1498.534 kb on + strand, within AO356_06790 at 1498.534 kb on + strand, within AO356_06790 at 1498.534 kb on + strand, within AO356_06790 at 1498.535 kb on - strand, within AO356_06790 at 1498.535 kb on - strand, within AO356_06790 at 1498.753 kb on + strand, within AO356_06790 at 1498.754 kb on - strand, within AO356_06790 at 1498.820 kb on - strand, within AO356_06790 at 1498.918 kb on + strand, within AO356_06790 at 1498.919 kb on - strand, within AO356_06790 at 1498.919 kb on - strand, within AO356_06790 at 1498.919 kb on - strand, within AO356_06790 at 1498.919 kb on - strand, within AO356_06790 at 1498.921 kb on + strand, within AO356_06790 at 1498.922 kb on - strand, within AO356_06790 at 1498.936 kb on + strand, within AO356_06790 at 1498.937 kb on - strand, within AO356_06790 at 1498.937 kb on - strand, within AO356_06790 at 1498.937 kb on - strand, within AO356_06790 at 1499.174 kb on + strand, within AO356_06790 at 1499.191 kb on + strand, within AO356_06790 at 1499.192 kb on - strand, within AO356_06790 at 1499.192 kb on - strand, within AO356_06790 at 1499.299 kb on + strand, within AO356_06790 at 1499.299 kb on + strand, within AO356_06790 at 1499.300 kb on - strand, within AO356_06790 at 1499.494 kb on + strand, within AO356_06790 at 1499.495 kb on - strand, within AO356_06790 at 1499.609 kb on + strand, within AO356_06790 at 1499.609 kb on + strand, within AO356_06790 at 1499.610 kb on - strand, within AO356_06790 at 1499.610 kb on - strand, within AO356_06790 at 1499.701 kb on + strand, within AO356_06790 at 1499.701 kb on + strand, within AO356_06790 at 1499.701 kb on + strand, within AO356_06790 at 1499.702 kb on - strand, within AO356_06790 at 1500.044 kb on + strand at 1500.044 kb on + strand at 1500.045 kb on - strand at 1500.045 kb on - strand at 1500.045 kb on - strand at 1500.045 kb on - strand at 1500.201 kb on - strand at 1500.947 kb on + strand, within AO356_06795 at 1500.947 kb on + strand, within AO356_06795 at 1500.948 kb on - strand, within AO356_06795 at 1500.953 kb on + strand, within AO356_06795
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.04 mM remove 1,496,803 - AO356_06785 0.17 -0.7 1,496,931 + AO356_06785 0.29 -0.8 1,496,932 - AO356_06785 0.29 +0.6 1,496,932 - AO356_06785 0.29 -0.4 1,497,049 + AO356_06785 0.39 -0.1 1,497,049 + AO356_06785 0.39 +0.3 1,497,049 + AO356_06785 0.39 +0.0 1,497,050 - AO356_06785 0.40 -0.7 1,497,050 - AO356_06785 0.40 -0.4 1,497,050 - AO356_06785 0.40 +0.1 1,497,122 + AO356_06785 0.46 +0.0 1,497,122 + AO356_06785 0.46 -0.4 1,497,122 + AO356_06785 0.46 +0.4 1,497,123 - AO356_06785 0.46 -0.3 1,497,123 - AO356_06785 0.46 -0.1 1,497,123 - AO356_06785 0.46 -0.5 1,497,123 - AO356_06785 0.46 +0.4 1,497,123 - AO356_06785 0.46 -1.6 1,497,123 - AO356_06785 0.46 -0.4 1,497,123 - AO356_06785 0.46 +0.1 1,497,123 - AO356_06785 0.46 -0.4 1,497,172 - AO356_06785 0.51 +0.1 1,497,332 + AO356_06785 0.65 -0.9 1,497,332 + AO356_06785 0.65 +0.7 1,497,332 + AO356_06785 0.65 +0.3 1,497,333 - AO356_06785 0.66 -1.3 1,497,333 - AO356_06785 0.66 +0.3 1,497,333 - AO356_06785 0.66 -0.7 1,497,333 - AO356_06785 0.66 +0.0 1,497,333 - AO356_06785 0.66 -0.6 1,497,333 - AO356_06785 0.66 -0.7 1,497,333 - AO356_06785 0.66 -0.5 1,497,406 + AO356_06785 0.72 -1.0 1,497,406 + AO356_06785 0.72 -0.1 1,497,407 - AO356_06785 0.72 -0.0 1,497,629 + -0.1 1,497,629 + +1.6 1,497,630 - +0.7 1,497,630 - +0.9 1,497,630 - +1.9 1,497,630 - -0.1 1,497,695 - -0.3 1,497,748 + +1.1 1,497,749 - -0.2 1,497,772 + +0.1 1,497,772 + +0.4 1,497,772 + +0.5 1,497,773 - -0.6 1,497,787 + -0.6 1,497,787 + +0.0 1,497,788 - +0.6 1,497,788 - -1.4 1,497,788 - +0.9 1,497,788 - -0.5 1,497,889 + +0.1 1,497,889 + +0.3 1,497,889 + +0.8 1,497,889 + +0.4 1,497,890 - -0.1 1,497,890 - -0.0 1,497,890 - -1.9 1,497,890 - +0.4 1,497,890 - +1.2 1,497,923 - +1.5 1,497,940 + AO356_06790 0.11 +0.3 1,497,955 + AO356_06790 0.11 +1.3 1,497,970 + AO356_06790 0.12 -0.4 1,497,971 - AO356_06790 0.12 -0.3 1,498,027 + AO356_06790 0.14 -0.1 1,498,028 - AO356_06790 0.14 +0.3 1,498,255 + AO356_06790 0.24 -0.3 1,498,255 + AO356_06790 0.24 -0.7 1,498,255 + AO356_06790 0.24 -0.6 1,498,255 + AO356_06790 0.24 -0.3 1,498,255 + AO356_06790 0.24 -1.0 1,498,255 + AO356_06790 0.24 -0.2 1,498,255 + AO356_06790 0.24 +0.1 1,498,256 - AO356_06790 0.24 +0.2 1,498,256 - AO356_06790 0.24 +1.3 1,498,256 - AO356_06790 0.24 +0.8 1,498,270 + AO356_06790 0.25 -1.0 1,498,271 - AO356_06790 0.25 -0.5 1,498,292 - AO356_06790 0.26 -0.1 1,498,429 + AO356_06790 0.31 -1.0 1,498,450 + AO356_06790 0.32 +0.2 1,498,450 + AO356_06790 0.32 -0.7 1,498,451 - AO356_06790 0.32 -0.2 1,498,451 - AO356_06790 0.32 +0.2 1,498,516 - AO356_06790 0.35 +0.9 1,498,534 + AO356_06790 0.36 -1.0 1,498,534 + AO356_06790 0.36 +0.3 1,498,534 + AO356_06790 0.36 +0.6 1,498,534 + AO356_06790 0.36 -0.3 1,498,534 + AO356_06790 0.36 +0.1 1,498,535 - AO356_06790 0.36 -1.3 1,498,535 - AO356_06790 0.36 +0.5 1,498,753 + AO356_06790 0.45 -0.4 1,498,754 - AO356_06790 0.45 +0.0 1,498,820 - AO356_06790 0.48 +0.0 1,498,918 + AO356_06790 0.52 -1.1 1,498,919 - AO356_06790 0.52 +1.3 1,498,919 - AO356_06790 0.52 -0.1 1,498,919 - AO356_06790 0.52 +1.0 1,498,919 - AO356_06790 0.52 -0.7 1,498,921 + AO356_06790 0.52 -0.5 1,498,922 - AO356_06790 0.52 -0.1 1,498,936 + AO356_06790 0.53 +0.5 1,498,937 - AO356_06790 0.53 -0.9 1,498,937 - AO356_06790 0.53 +0.0 1,498,937 - AO356_06790 0.53 +1.0 1,499,174 + AO356_06790 0.63 -0.7 1,499,191 + AO356_06790 0.64 -0.1 1,499,192 - AO356_06790 0.64 -1.5 1,499,192 - AO356_06790 0.64 +0.4 1,499,299 + AO356_06790 0.68 +0.3 1,499,299 + AO356_06790 0.68 -1.2 1,499,300 - AO356_06790 0.68 +0.2 1,499,494 + AO356_06790 0.77 -0.5 1,499,495 - AO356_06790 0.77 -0.7 1,499,609 + AO356_06790 0.82 +0.8 1,499,609 + AO356_06790 0.82 +0.2 1,499,610 - AO356_06790 0.82 -0.6 1,499,610 - AO356_06790 0.82 +0.2 1,499,701 + AO356_06790 0.86 +1.1 1,499,701 + AO356_06790 0.86 -0.4 1,499,701 + AO356_06790 0.86 -1.2 1,499,702 - AO356_06790 0.86 +0.9 1,500,044 + -1.8 1,500,044 + +0.1 1,500,045 - +0.7 1,500,045 - -0.6 1,500,045 - +0.6 1,500,045 - -0.3 1,500,201 - +0.7 1,500,947 + AO356_06795 0.38 +0.4 1,500,947 + AO356_06795 0.38 +0.5 1,500,948 - AO356_06795 0.38 +0.1 1,500,953 + AO356_06795 0.38 -1.0
Or see this region's nucleotide sequence