Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06255

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06250 and AO356_06255 overlap by 4 nucleotidesAO356_06255 and AO356_06260 overlap by 4 nucleotidesAO356_06260 and AO356_06265 overlap by 4 nucleotides AO356_06250: AO356_06250 - chemotaxis protein CheY, at 1,384,399 to 1,385,409 _06250 AO356_06255: AO356_06255 - chemotaxis protein CheA, at 1,385,406 to 1,387,670 _06255 AO356_06260: AO356_06260 - chemotaxis protein CheW, at 1,387,667 to 1,388,335 _06260 AO356_06265: AO356_06265 - chemotaxis protein CheR, at 1,388,332 to 1,389,597 _06265 Position (kb) 1385 1386 1387 1388Strain fitness (log2 ratio) -3 -2 -1 0 1at 1384.452 kb on + strandat 1384.452 kb on + strandat 1384.496 kb on + strandat 1384.496 kb on + strandat 1384.497 kb on - strandat 1384.597 kb on + strand, within AO356_06250at 1384.597 kb on + strand, within AO356_06250at 1384.622 kb on + strand, within AO356_06250at 1384.622 kb on + strand, within AO356_06250at 1384.974 kb on + strand, within AO356_06250at 1384.974 kb on + strand, within AO356_06250at 1385.276 kb on + strand, within AO356_06250at 1385.276 kb on + strand, within AO356_06250at 1385.276 kb on + strand, within AO356_06250at 1385.277 kb on - strand, within AO356_06250at 1385.482 kb on + strandat 1385.482 kb on + strandat 1385.482 kb on + strandat 1385.482 kb on + strandat 1385.482 kb on + strandat 1385.483 kb on - strandat 1385.483 kb on - strandat 1385.483 kb on - strandat 1385.483 kb on - strandat 1385.483 kb on - strandat 1385.486 kb on - strandat 1385.536 kb on + strandat 1385.536 kb on + strandat 1385.536 kb on + strandat 1385.536 kb on + strandat 1385.536 kb on + strandat 1385.537 kb on - strandat 1385.876 kb on + strand, within AO356_06255at 1386.004 kb on + strand, within AO356_06255at 1386.004 kb on + strand, within AO356_06255at 1386.206 kb on - strand, within AO356_06255at 1386.607 kb on - strand, within AO356_06255at 1386.732 kb on + strand, within AO356_06255at 1386.733 kb on - strand, within AO356_06255at 1386.733 kb on - strand, within AO356_06255at 1386.733 kb on - strand, within AO356_06255at 1386.771 kb on - strand, within AO356_06255at 1386.984 kb on + strand, within AO356_06255at 1386.984 kb on + strand, within AO356_06255at 1386.984 kb on + strand, within AO356_06255at 1386.984 kb on + strand, within AO356_06255at 1386.985 kb on - strand, within AO356_06255at 1386.985 kb on - strand, within AO356_06255at 1386.985 kb on - strand, within AO356_06255at 1386.985 kb on - strand, within AO356_06255at 1386.985 kb on - strand, within AO356_06255at 1387.166 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.315 kb on + strand, within AO356_06255at 1387.316 kb on - strand, within AO356_06255at 1387.316 kb on - strand, within AO356_06255at 1387.316 kb on - strand, within AO356_06255at 1387.316 kb on - strand, within AO356_06255at 1387.546 kb on + strandat 1387.737 kb on + strand, within AO356_06260at 1387.737 kb on + strand, within AO356_06260at 1387.738 kb on - strand, within AO356_06260at 1387.758 kb on + strand, within AO356_06260at 1387.758 kb on + strand, within AO356_06260at 1387.759 kb on - strand, within AO356_06260at 1387.892 kb on - strand, within AO356_06260at 1388.163 kb on + strand, within AO356_06260at 1388.164 kb on - strand, within AO356_06260at 1388.197 kb on - strand, within AO356_06260at 1388.221 kb on + strand, within AO356_06260at 1388.221 kb on + strand, within AO356_06260at 1388.221 kb on + strand, within AO356_06260at 1388.222 kb on - strand, within AO356_06260at 1388.222 kb on - strand, within AO356_06260at 1388.248 kb on + strand, within AO356_06260at 1388.316 kb on + strandat 1388.316 kb on + strandat 1388.317 kb on - strandat 1388.317 kb on - strandat 1388.317 kb on - strandat 1388.317 kb on - strandat 1388.317 kb on - strandat 1388.317 kb on - strandat 1388.317 kb on - strandat 1388.354 kb on - strandat 1388.471 kb on + strand, within AO356_06265at 1388.471 kb on + strand, within AO356_06265at 1388.544 kb on - strand, within AO356_06265at 1388.579 kb on + strand, within AO356_06265at 1388.579 kb on + strand, within AO356_06265at 1388.579 kb on + strand, within AO356_06265at 1388.580 kb on - strand, within AO356_06265at 1388.580 kb on - strand, within AO356_06265

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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1,384,452 + +0.4
1,384,452 + -0.1
1,384,496 + -1.8
1,384,496 + -0.4
1,384,497 - -3.4
1,384,597 + AO356_06250 0.20 -1.3
1,384,597 + AO356_06250 0.20 +0.9
1,384,622 + AO356_06250 0.22 +1.7
1,384,622 + AO356_06250 0.22 -2.4
1,384,974 + AO356_06250 0.57 +0.1
1,384,974 + AO356_06250 0.57 -0.5
1,385,276 + AO356_06250 0.87 -1.2
1,385,276 + AO356_06250 0.87 -1.0
1,385,276 + AO356_06250 0.87 -0.8
1,385,277 - AO356_06250 0.87 -0.8
1,385,482 + -0.0
1,385,482 + -0.3
1,385,482 + +1.6
1,385,482 + +0.9
1,385,482 + -0.8
1,385,483 - +0.8
1,385,483 - +1.2
1,385,483 - -0.1
1,385,483 - +0.2
1,385,483 - -0.6
1,385,486 - +0.2
1,385,536 + +0.6
1,385,536 + +0.2
1,385,536 + -0.4
1,385,536 + +0.9
1,385,536 + +0.1
1,385,537 - +0.2
1,385,876 + AO356_06255 0.21 -0.1
1,386,004 + AO356_06255 0.26 -1.6
1,386,004 + AO356_06255 0.26 +0.2
1,386,206 - AO356_06255 0.35 -0.9
1,386,607 - AO356_06255 0.53 +0.4
1,386,732 + AO356_06255 0.59 +1.0
1,386,733 - AO356_06255 0.59 -0.7
1,386,733 - AO356_06255 0.59 +0.7
1,386,733 - AO356_06255 0.59 +0.6
1,386,771 - AO356_06255 0.60 +0.5
1,386,984 + AO356_06255 0.70 +1.5
1,386,984 + AO356_06255 0.70 -0.3
1,386,984 + AO356_06255 0.70 +0.7
1,386,984 + AO356_06255 0.70 +0.7
1,386,985 - AO356_06255 0.70 -0.5
1,386,985 - AO356_06255 0.70 -1.0
1,386,985 - AO356_06255 0.70 +0.9
1,386,985 - AO356_06255 0.70 +1.0
1,386,985 - AO356_06255 0.70 -1.8
1,387,166 + AO356_06255 0.78 +0.5
1,387,315 + AO356_06255 0.84 -0.9
1,387,315 + AO356_06255 0.84 +0.3
1,387,315 + AO356_06255 0.84 -1.3
1,387,315 + AO356_06255 0.84 +0.2
1,387,315 + AO356_06255 0.84 -0.1
1,387,315 + AO356_06255 0.84 +0.0
1,387,315 + AO356_06255 0.84 -0.9
1,387,315 + AO356_06255 0.84 +0.2
1,387,316 - AO356_06255 0.84 +0.9
1,387,316 - AO356_06255 0.84 -0.8
1,387,316 - AO356_06255 0.84 -0.8
1,387,316 - AO356_06255 0.84 -0.3
1,387,546 + -0.2
1,387,737 + AO356_06260 0.10 +0.6
1,387,737 + AO356_06260 0.10 +0.2
1,387,738 - AO356_06260 0.11 +0.1
1,387,758 + AO356_06260 0.14 +1.3
1,387,758 + AO356_06260 0.14 +0.3
1,387,759 - AO356_06260 0.14 -0.7
1,387,892 - AO356_06260 0.34 -0.5
1,388,163 + AO356_06260 0.74 +0.9
1,388,164 - AO356_06260 0.74 +1.6
1,388,197 - AO356_06260 0.79 +0.4
1,388,221 + AO356_06260 0.83 +0.8
1,388,221 + AO356_06260 0.83 -1.2
1,388,221 + AO356_06260 0.83 +0.3
1,388,222 - AO356_06260 0.83 -0.8
1,388,222 - AO356_06260 0.83 +0.8
1,388,248 + AO356_06260 0.87 -0.4
1,388,316 + +0.4
1,388,316 + -0.1
1,388,317 - +0.8
1,388,317 - +0.9
1,388,317 - -0.8
1,388,317 - +0.0
1,388,317 - -0.7
1,388,317 - -0.2
1,388,317 - -0.5
1,388,354 - -1.8
1,388,471 + AO356_06265 0.11 -0.7
1,388,471 + AO356_06265 0.11 +1.3
1,388,544 - AO356_06265 0.17 -1.1
1,388,579 + AO356_06265 0.20 +1.0
1,388,579 + AO356_06265 0.20 +0.8
1,388,579 + AO356_06265 0.20 +0.1
1,388,580 - AO356_06265 0.20 +0.9
1,388,580 - AO356_06265 0.20 +0.6

Or see this region's nucleotide sequence