Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00810

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00805 and AO356_00810 are separated by 60 nucleotidesAO356_00810 and AO356_00815 are separated by 228 nucleotides AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220 _00805 AO356_00810: AO356_00810 - hypothetical protein, at 183,281 to 183,544 _00810 AO356_00815: AO356_00815 - hypothetical protein, at 183,773 to 185,794 _00815 Position (kb) 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.605 kb on - strand, within AO356_00805at 182.605 kb on - strand, within AO356_00805at 182.744 kb on + strand, within AO356_00805at 182.745 kb on - strand, within AO356_00805at 182.745 kb on - strand, within AO356_00805at 182.787 kb on + strand, within AO356_00805at 182.788 kb on - strand, within AO356_00805at 182.993 kb on + strand, within AO356_00805at 182.994 kb on - strand, within AO356_00805at 183.271 kb on + strandat 183.271 kb on + strandat 183.272 kb on - strandat 183.293 kb on + strandat 183.293 kb on + strandat 183.294 kb on - strandat 183.333 kb on - strand, within AO356_00810at 183.333 kb on - strand, within AO356_00810at 183.592 kb on + strandat 183.600 kb on + strandat 183.600 kb on + strandat 183.601 kb on - strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.651 kb on + strandat 183.651 kb on + strandat 183.652 kb on - strandat 183.652 kb on - strandat 183.655 kb on + strandat 183.655 kb on + strandat 183.655 kb on + strandat 183.749 kb on + strandat 183.749 kb on + strandat 183.749 kb on + strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.888 kb on - strandat 183.888 kb on - strandat 183.888 kb on - strandat 183.888 kb on - strandat 184.037 kb on + strand, within AO356_00815at 184.037 kb on + strand, within AO356_00815at 184.038 kb on - strand, within AO356_00815at 184.038 kb on - strand, within AO356_00815at 184.040 kb on + strand, within AO356_00815at 184.041 kb on - strand, within AO356_00815at 184.041 kb on - strand, within AO356_00815at 184.137 kb on - strand, within AO356_00815at 184.161 kb on - strand, within AO356_00815at 184.176 kb on - strand, within AO356_00815at 184.349 kb on + strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.376 kb on - strand, within AO356_00815at 184.376 kb on - strand, within AO356_00815at 184.517 kb on + strand, within AO356_00815at 184.523 kb on + strand, within AO356_00815at 184.523 kb on + strand, within AO356_00815at 184.524 kb on - strand, within AO356_00815at 184.524 kb on - strand, within AO356_00815at 184.524 kb on - strand, within AO356_00815

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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182,605 - AO356_00805 0.44 -0.3
182,605 - AO356_00805 0.44 -0.8
182,744 + AO356_00805 0.57 +0.0
182,745 - AO356_00805 0.57 +0.4
182,745 - AO356_00805 0.57 +1.5
182,787 + AO356_00805 0.61 +0.4
182,788 - AO356_00805 0.61 -0.2
182,993 + AO356_00805 0.79 +0.5
182,994 - AO356_00805 0.79 -0.1
183,271 + +1.0
183,271 + -0.2
183,272 - -2.9
183,293 + -0.4
183,293 + -0.1
183,294 - +0.5
183,333 - AO356_00810 0.20 -0.7
183,333 - AO356_00810 0.20 -0.6
183,592 + +0.3
183,600 + +1.7
183,600 + -1.1
183,601 - +0.4
183,625 + +0.2
183,625 + -1.4
183,625 + -0.3
183,625 + +1.1
183,625 + -0.8
183,626 - -0.2
183,626 - +0.4
183,626 - -1.5
183,626 - -0.4
183,626 - +0.1
183,651 + +0.5
183,651 + +2.2
183,652 - -0.2
183,652 - -0.2
183,655 + +0.1
183,655 + -0.5
183,655 + -0.8
183,749 + +0.4
183,749 + -1.0
183,749 + +0.8
183,750 - +0.7
183,750 - +0.1
183,750 - -0.4
183,750 - +0.2
183,750 - -0.0
183,887 + +1.8
183,887 + -1.1
183,887 + -0.6
183,887 + -0.5
183,887 + -0.7
183,888 - -1.4
183,888 - +0.4
183,888 - +0.1
183,888 - +0.7
184,037 + AO356_00815 0.13 +0.2
184,037 + AO356_00815 0.13 +0.6
184,038 - AO356_00815 0.13 +0.2
184,038 - AO356_00815 0.13 -0.0
184,040 + AO356_00815 0.13 +0.1
184,041 - AO356_00815 0.13 +0.3
184,041 - AO356_00815 0.13 -0.5
184,137 - AO356_00815 0.18 +0.2
184,161 - AO356_00815 0.19 -2.5
184,176 - AO356_00815 0.20 +0.5
184,349 + AO356_00815 0.28 -0.2
184,374 - AO356_00815 0.30 +0.2
184,374 - AO356_00815 0.30 +0.5
184,374 - AO356_00815 0.30 -0.7
184,374 - AO356_00815 0.30 -0.6
184,376 - AO356_00815 0.30 +2.5
184,376 - AO356_00815 0.30 -0.7
184,517 + AO356_00815 0.37 +1.2
184,523 + AO356_00815 0.37 -1.4
184,523 + AO356_00815 0.37 +0.4
184,524 - AO356_00815 0.37 +0.4
184,524 - AO356_00815 0.37 +0.2
184,524 - AO356_00815 0.37 -2.7

Or see this region's nucleotide sequence