Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23045

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23040 and ABZR87_RS23045 are separated by 96 nucleotidesABZR87_RS23045 and ABZR87_RS23050 are separated by 7 nucleotidesABZR87_RS23050 and ABZR87_RS23055 are separated by 34 nucleotidesABZR87_RS23055 and ABZR87_RS23060 are separated by 157 nucleotides ABZR87_RS23040: ABZR87_RS23040 - zinc-dependent alcohol dehydrogenase, at 1,528,420 to 1,529,691 _RS23040 ABZR87_RS23045: ABZR87_RS23045 - Nramp family divalent metal transporter, at 1,529,788 to 1,531,059 _RS23045 ABZR87_RS23050: ABZR87_RS23050 - hypothetical protein, at 1,531,067 to 1,531,333 _RS23050 ABZR87_RS23055: ABZR87_RS23055 - YetF domain-containing protein, at 1,531,368 to 1,531,859 _RS23055 ABZR87_RS23060: ABZR87_RS23060 - SDR family oxidoreductase, at 1,532,017 to 1,532,877 _RS23060 Position (kb) 1529 1530 1531 1532Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1529.189 kb on + strand, within ABZR87_RS23040at 1529.189 kb on + strand, within ABZR87_RS23040at 1529.394 kb on - strand, within ABZR87_RS23040at 1529.408 kb on + strand, within ABZR87_RS23040at 1529.408 kb on + strand, within ABZR87_RS23040at 1529.677 kb on + strandat 1529.677 kb on + strandat 1529.677 kb on + strandat 1529.677 kb on + strandat 1529.678 kb on - strandat 1529.978 kb on + strand, within ABZR87_RS23045at 1529.978 kb on + strand, within ABZR87_RS23045at 1529.979 kb on - strand, within ABZR87_RS23045at 1530.053 kb on + strand, within ABZR87_RS23045at 1530.054 kb on - strand, within ABZR87_RS23045at 1530.054 kb on - strand, within ABZR87_RS23045at 1530.094 kb on - strand, within ABZR87_RS23045at 1530.123 kb on - strand, within ABZR87_RS23045at 1530.281 kb on + strand, within ABZR87_RS23045at 1530.282 kb on - strand, within ABZR87_RS23045at 1530.461 kb on + strand, within ABZR87_RS23045at 1530.461 kb on + strand, within ABZR87_RS23045at 1530.462 kb on - strand, within ABZR87_RS23045at 1530.506 kb on + strand, within ABZR87_RS23045at 1530.506 kb on + strand, within ABZR87_RS23045at 1530.507 kb on - strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.626 kb on + strand, within ABZR87_RS23045at 1530.635 kb on + strand, within ABZR87_RS23045at 1530.696 kb on - strand, within ABZR87_RS23045at 1530.803 kb on + strand, within ABZR87_RS23045at 1530.803 kb on + strand, within ABZR87_RS23045at 1530.804 kb on - strand, within ABZR87_RS23045at 1530.966 kb on - strandat 1531.352 kb on - strandat 1531.352 kb on - strandat 1531.352 kb on - strandat 1531.352 kb on - strandat 1531.449 kb on + strand, within ABZR87_RS23055at 1531.639 kb on - strand, within ABZR87_RS23055at 1531.647 kb on + strand, within ABZR87_RS23055at 1531.647 kb on + strand, within ABZR87_RS23055at 1531.647 kb on + strand, within ABZR87_RS23055at 1531.648 kb on - strand, within ABZR87_RS23055at 1531.648 kb on - strand, within ABZR87_RS23055at 1531.704 kb on + strand, within ABZR87_RS23055at 1531.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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1,529,189 + ABZR87_RS23040 0.60 -4.1
1,529,189 + ABZR87_RS23040 0.60 -1.8
1,529,394 - ABZR87_RS23040 0.77 -2.1
1,529,408 + ABZR87_RS23040 0.78 -2.5
1,529,408 + ABZR87_RS23040 0.78 -0.1
1,529,677 + +0.4
1,529,677 + +0.8
1,529,677 + -1.5
1,529,677 + -1.7
1,529,678 - +0.9
1,529,978 + ABZR87_RS23045 0.15 +0.0
1,529,978 + ABZR87_RS23045 0.15 -0.1
1,529,979 - ABZR87_RS23045 0.15 -0.9
1,530,053 + ABZR87_RS23045 0.21 -0.7
1,530,054 - ABZR87_RS23045 0.21 -1.7
1,530,054 - ABZR87_RS23045 0.21 -3.5
1,530,094 - ABZR87_RS23045 0.24 +1.4
1,530,123 - ABZR87_RS23045 0.26 +1.0
1,530,281 + ABZR87_RS23045 0.39 +0.4
1,530,282 - ABZR87_RS23045 0.39 -1.2
1,530,461 + ABZR87_RS23045 0.53 -2.6
1,530,461 + ABZR87_RS23045 0.53 -0.1
1,530,462 - ABZR87_RS23045 0.53 +1.4
1,530,506 + ABZR87_RS23045 0.56 +0.3
1,530,506 + ABZR87_RS23045 0.56 +1.4
1,530,507 - ABZR87_RS23045 0.57 -0.1
1,530,593 + ABZR87_RS23045 0.63 -2.1
1,530,593 + ABZR87_RS23045 0.63 +0.2
1,530,593 + ABZR87_RS23045 0.63 -2.1
1,530,593 + ABZR87_RS23045 0.63 -0.9
1,530,593 + ABZR87_RS23045 0.63 -1.3
1,530,594 - ABZR87_RS23045 0.63 +0.6
1,530,594 - ABZR87_RS23045 0.63 +0.1
1,530,594 - ABZR87_RS23045 0.63 -2.4
1,530,594 - ABZR87_RS23045 0.63 +0.3
1,530,594 - ABZR87_RS23045 0.63 +0.1
1,530,626 + ABZR87_RS23045 0.66 -0.0
1,530,635 + ABZR87_RS23045 0.67 +1.2
1,530,696 - ABZR87_RS23045 0.71 +1.8
1,530,803 + ABZR87_RS23045 0.80 +3.2
1,530,803 + ABZR87_RS23045 0.80 +0.1
1,530,804 - ABZR87_RS23045 0.80 -0.1
1,530,966 - -0.6
1,531,352 - -1.0
1,531,352 - +1.2
1,531,352 - +0.3
1,531,352 - -1.0
1,531,449 + ABZR87_RS23055 0.16 +1.1
1,531,639 - ABZR87_RS23055 0.55 -2.7
1,531,647 + ABZR87_RS23055 0.57 +0.6
1,531,647 + ABZR87_RS23055 0.57 -0.1
1,531,647 + ABZR87_RS23055 0.57 -1.4
1,531,648 - ABZR87_RS23055 0.57 -1.2
1,531,648 - ABZR87_RS23055 0.57 -2.2
1,531,704 + ABZR87_RS23055 0.68 -0.8
1,531,989 - +0.3

Or see this region's nucleotide sequence