Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22075

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22065 and ABZR87_RS22070 overlap by 11 nucleotidesABZR87_RS22070 and ABZR87_RS22075 are separated by 35 nucleotidesABZR87_RS22075 and ABZR87_RS22080 overlap by 4 nucleotides ABZR87_RS22065: ABZR87_RS22065 - flagellar protein export ATPase FliI, at 1,319,112 to 1,320,548 _RS22065 ABZR87_RS22070: ABZR87_RS22070 - flagellar assembly protein FliH, at 1,320,538 to 1,321,275 _RS22070 ABZR87_RS22075: ABZR87_RS22075 - flagellar motor switch protein FliG, at 1,321,311 to 1,322,303 _RS22075 ABZR87_RS22080: ABZR87_RS22080 - flagellar basal-body MS-ring/collar protein FliF, at 1,322,300 to 1,324,135 _RS22080 Position (kb) 1321 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1321.232 kb on + strandat 1321.318 kb on + strandat 1321.318 kb on + strandat 1321.318 kb on + strandat 1321.319 kb on - strandat 1321.319 kb on - strandat 1321.352 kb on - strandat 1321.870 kb on + strand, within ABZR87_RS22075at 1321.870 kb on + strand, within ABZR87_RS22075at 1322.083 kb on + strand, within ABZR87_RS22075at 1322.083 kb on + strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.084 kb on - strand, within ABZR87_RS22075at 1322.308 kb on + strandat 1322.637 kb on + strand, within ABZR87_RS22080at 1322.638 kb on - strand, within ABZR87_RS22080at 1322.638 kb on - strand, within ABZR87_RS22080at 1322.638 kb on - strand, within ABZR87_RS22080at 1322.658 kb on + strand, within ABZR87_RS22080at 1322.659 kb on - strand, within ABZR87_RS22080at 1322.853 kb on + strand, within ABZR87_RS22080at 1322.853 kb on + strand, within ABZR87_RS22080at 1322.853 kb on + strand, within ABZR87_RS22080at 1322.854 kb on - strand, within ABZR87_RS22080at 1322.854 kb on - strand, within ABZR87_RS22080at 1322.885 kb on + strand, within ABZR87_RS22080at 1322.886 kb on - strand, within ABZR87_RS22080at 1322.886 kb on - strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.934 kb on + strand, within ABZR87_RS22080at 1322.935 kb on - strand, within ABZR87_RS22080at 1322.935 kb on - strand, within ABZR87_RS22080at 1323.166 kb on + strand, within ABZR87_RS22080at 1323.213 kb on + strand, within ABZR87_RS22080at 1323.214 kb on - strand, within ABZR87_RS22080at 1323.261 kb on - strand, within ABZR87_RS22080

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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1,321,232 + +3.3
1,321,318 + +2.9
1,321,318 + +1.9
1,321,318 + +2.0
1,321,319 - +1.4
1,321,319 - +1.3
1,321,352 - -2.0
1,321,870 + ABZR87_RS22075 0.56 +1.0
1,321,870 + ABZR87_RS22075 0.56 +2.5
1,322,083 + ABZR87_RS22075 0.78 +2.9
1,322,083 + ABZR87_RS22075 0.78 +2.8
1,322,084 - ABZR87_RS22075 0.78 +0.6
1,322,084 - ABZR87_RS22075 0.78 +1.6
1,322,084 - ABZR87_RS22075 0.78 +1.9
1,322,084 - ABZR87_RS22075 0.78 +2.2
1,322,308 + +1.1
1,322,637 + ABZR87_RS22080 0.18 +1.6
1,322,638 - ABZR87_RS22080 0.18 +2.4
1,322,638 - ABZR87_RS22080 0.18 +1.9
1,322,638 - ABZR87_RS22080 0.18 +1.7
1,322,658 + ABZR87_RS22080 0.19 +2.7
1,322,659 - ABZR87_RS22080 0.20 +3.2
1,322,853 + ABZR87_RS22080 0.30 +2.1
1,322,853 + ABZR87_RS22080 0.30 +1.3
1,322,853 + ABZR87_RS22080 0.30 +2.5
1,322,854 - ABZR87_RS22080 0.30 +2.1
1,322,854 - ABZR87_RS22080 0.30 +2.3
1,322,885 + ABZR87_RS22080 0.32 +1.5
1,322,886 - ABZR87_RS22080 0.32 +2.2
1,322,886 - ABZR87_RS22080 0.32 +2.8
1,322,934 + ABZR87_RS22080 0.35 +2.0
1,322,934 + ABZR87_RS22080 0.35 +2.8
1,322,934 + ABZR87_RS22080 0.35 +2.2
1,322,934 + ABZR87_RS22080 0.35 +2.6
1,322,935 - ABZR87_RS22080 0.35 +2.4
1,322,935 - ABZR87_RS22080 0.35 +1.8
1,323,166 + ABZR87_RS22080 0.47 +2.4
1,323,213 + ABZR87_RS22080 0.50 +1.8
1,323,214 - ABZR87_RS22080 0.50 +1.5
1,323,261 - ABZR87_RS22080 0.52 +2.8

Or see this region's nucleotide sequence