Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21725

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21715 and ABZR87_RS21720 are separated by 101 nucleotidesABZR87_RS21720 and ABZR87_RS21725 are separated by 196 nucleotidesABZR87_RS21725 and ABZR87_RS21730 overlap by 1 nucleotides ABZR87_RS21715: ABZR87_RS21715 - TolC family protein, at 1,257,289 to 1,258,458 _RS21715 ABZR87_RS21720: ABZR87_RS21720 - hypothetical protein, at 1,258,560 to 1,258,913 _RS21720 ABZR87_RS21725: ABZR87_RS21725 - heavy metal response regulator transcription factor, at 1,259,110 to 1,259,784 _RS21725 ABZR87_RS21730: ABZR87_RS21730 - heavy metal sensor histidine kinase, at 1,259,784 to 1,261,226 _RS21730 Position (kb) 1259 1260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1258.358 kb on + strandat 1258.358 kb on + strandat 1258.561 kb on + strandat 1258.561 kb on + strandat 1258.562 kb on - strandat 1258.583 kb on - strandat 1258.583 kb on - strandat 1258.625 kb on - strand, within ABZR87_RS21720at 1258.625 kb on - strand, within ABZR87_RS21720at 1258.682 kb on - strand, within ABZR87_RS21720at 1258.682 kb on - strand, within ABZR87_RS21720at 1258.715 kb on + strand, within ABZR87_RS21720at 1258.716 kb on - strand, within ABZR87_RS21720at 1258.716 kb on - strand, within ABZR87_RS21720at 1258.717 kb on + strand, within ABZR87_RS21720at 1258.718 kb on - strand, within ABZR87_RS21720at 1259.064 kb on + strandat 1259.064 kb on + strandat 1259.065 kb on - strandat 1259.065 kb on - strandat 1259.153 kb on - strandat 1259.242 kb on + strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.398 kb on + strand, within ABZR87_RS21725at 1259.398 kb on + strand, within ABZR87_RS21725at 1259.398 kb on + strand, within ABZR87_RS21725at 1259.399 kb on - strand, within ABZR87_RS21725at 1259.569 kb on + strand, within ABZR87_RS21725at 1259.570 kb on - strand, within ABZR87_RS21725at 1259.639 kb on + strand, within ABZR87_RS21725at 1259.892 kb on + strandat 1259.892 kb on + strandat 1259.892 kb on + strandat 1259.893 kb on - strandat 1259.893 kb on - strandat 1259.893 kb on - strandat 1259.898 kb on + strandat 1259.898 kb on + strandat 1259.899 kb on - strandat 1259.987 kb on - strand, within ABZR87_RS21730at 1260.024 kb on + strand, within ABZR87_RS21730at 1260.024 kb on + strand, within ABZR87_RS21730at 1260.027 kb on - strand, within ABZR87_RS21730at 1260.172 kb on + strand, within ABZR87_RS21730at 1260.306 kb on + strand, within ABZR87_RS21730at 1260.306 kb on + strand, within ABZR87_RS21730at 1260.307 kb on - strand, within ABZR87_RS21730at 1260.648 kb on + strand, within ABZR87_RS21730at 1260.649 kb on - strand, within ABZR87_RS21730at 1260.681 kb on + strand, within ABZR87_RS21730at 1260.681 kb on + strand, within ABZR87_RS21730at 1260.682 kb on - strand, within ABZR87_RS21730

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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1,258,358 + -0.0
1,258,358 + -0.5
1,258,561 + +1.4
1,258,561 + -2.2
1,258,562 - +0.3
1,258,583 - -3.0
1,258,583 - +0.2
1,258,625 - ABZR87_RS21720 0.18 +1.3
1,258,625 - ABZR87_RS21720 0.18 +1.3
1,258,682 - ABZR87_RS21720 0.34 +0.3
1,258,682 - ABZR87_RS21720 0.34 -2.2
1,258,715 + ABZR87_RS21720 0.44 -0.6
1,258,716 - ABZR87_RS21720 0.44 +0.3
1,258,716 - ABZR87_RS21720 0.44 +1.8
1,258,717 + ABZR87_RS21720 0.44 +0.6
1,258,718 - ABZR87_RS21720 0.45 +1.7
1,259,064 + -0.5
1,259,064 + -0.3
1,259,065 - -2.6
1,259,065 - +0.2
1,259,153 - +1.0
1,259,242 + ABZR87_RS21725 0.20 -1.1
1,259,243 - ABZR87_RS21725 0.20 -1.7
1,259,243 - ABZR87_RS21725 0.20 +1.6
1,259,243 - ABZR87_RS21725 0.20 +1.6
1,259,243 - ABZR87_RS21725 0.20 -1.5
1,259,243 - ABZR87_RS21725 0.20 -0.3
1,259,398 + ABZR87_RS21725 0.43 +0.9
1,259,398 + ABZR87_RS21725 0.43 +1.2
1,259,398 + ABZR87_RS21725 0.43 -1.5
1,259,399 - ABZR87_RS21725 0.43 +1.6
1,259,569 + ABZR87_RS21725 0.68 +1.7
1,259,570 - ABZR87_RS21725 0.68 +0.7
1,259,639 + ABZR87_RS21725 0.78 +1.1
1,259,892 + -4.0
1,259,892 + -2.7
1,259,892 + +1.7
1,259,893 - -3.4
1,259,893 - -0.6
1,259,893 - +1.8
1,259,898 + -0.8
1,259,898 + +0.4
1,259,899 - +0.7
1,259,987 - ABZR87_RS21730 0.14 -1.4
1,260,024 + ABZR87_RS21730 0.17 +0.2
1,260,024 + ABZR87_RS21730 0.17 -0.1
1,260,027 - ABZR87_RS21730 0.17 -3.6
1,260,172 + ABZR87_RS21730 0.27 +1.2
1,260,306 + ABZR87_RS21730 0.36 -2.1
1,260,306 + ABZR87_RS21730 0.36 -2.0
1,260,307 - ABZR87_RS21730 0.36 +0.9
1,260,648 + ABZR87_RS21730 0.60 +0.3
1,260,649 - ABZR87_RS21730 0.60 +0.6
1,260,681 + ABZR87_RS21730 0.62 +0.6
1,260,681 + ABZR87_RS21730 0.62 +0.7
1,260,682 - ABZR87_RS21730 0.62 -0.6

Or see this region's nucleotide sequence