Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20700

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 1; outgrowth in LB
1,029,252	+				+0.1
1,029,252	+				+0.0
1,029,252	+				+1.0
1,029,252	+				-0.8
1,029,252	+				+0.3
1,029,252	+				-0.5
1,029,252	+				+1.2
1,029,253	-				-2.5
1,029,253	-				-2.7
1,029,253	-				-3.1
1,029,253	-				+2.4
1,029,253	-				-2.9
1,029,253	-				+1.3
1,029,339	+				-1.6
1,029,339	+				-0.7
1,029,339	+				-0.4
1,029,339	+				+0.3
1,029,339	+				-1.8
1,029,339	+				+0.7
1,029,339	+				+0.3
1,029,339	+				+0.3
1,029,339	+				+1.5
1,029,339	+				+1.3
1,029,339	+				-2.1
1,029,339	+				-0.2
1,029,339	+				-2.1
1,029,339	+				-2.7
1,029,340	-				-1.9
1,029,340	-				+1.6
1,029,340	-				-2.0
1,029,340	-				-1.7
1,029,340	-				-2.2
1,029,340	-				-1.6
1,029,340	-				-3.7
1,029,340	-				+1.2
1,029,340	-				-3.1
1,029,340	-				+1.8
1,029,340	-				+1.2
1,029,341	+				-2.0
1,029,342	-				+1.2
1,029,342	-				-2.8
1,029,342	-				+0.7
1,029,342	-				-2.6
1,029,374	+				-0.5
1,029,374	+				+0.6
1,029,375	-				-3.5
1,029,380	-				-3.7
1,029,485	+				-0.3
1,029,485	+				+1.6
1,029,485	+				+1.7
1,029,486	-				-2.0
1,029,486	-				+0.2
1,029,524	-				-1.3
1,029,524	-				+0.1
1,029,524	-				+0.6
1,029,524	-				-2.2
1,029,607	+		ABZR87_RS20695	0.16	+0.9
1,029,607	+		ABZR87_RS20695	0.16	+0.8
1,029,608	-		ABZR87_RS20695	0.16	-1.3
1,029,616	+		ABZR87_RS20695	0.17	+0.6
1,029,616	+		ABZR87_RS20695	0.17	+2.0
1,029,616	+		ABZR87_RS20695	0.17	-2.5
1,029,616	+		ABZR87_RS20695	0.17	+0.3
1,029,617	-		ABZR87_RS20695	0.18	-1.2
1,029,617	-		ABZR87_RS20695	0.18	+0.9
1,029,617	-		ABZR87_RS20695	0.18	-3.9
1,029,617	-		ABZR87_RS20695	0.18	-1.8
1,029,888	+		ABZR87_RS20695	0.64	-3.9
1,029,888	+		ABZR87_RS20695	0.64	+0.7
1,029,919	+		ABZR87_RS20695	0.69	+1.2
1,029,991	+		ABZR87_RS20695	0.82	-0.1
1,029,991	+		ABZR87_RS20695	0.82	-3.2
1,029,991	+		ABZR87_RS20695	0.82	-0.3
1,029,992	-		ABZR87_RS20695	0.82	-3.5
1,029,992	-		ABZR87_RS20695	0.82	+0.4
1,029,992	-		ABZR87_RS20695	0.82	+0.3
1,029,992	-		ABZR87_RS20695	0.82	-0.1
1,030,039	+		ABZR87_RS20695	0.90	-0.3
1,030,039	+		ABZR87_RS20695	0.90	+0.1
1,030,040	-				-0.0
1,030,088	-				-0.0
1,030,088	-				-3.8
1,030,411	-				+2.1
1,030,565	+				-3.3
1,030,565	+				+0.5
1,030,594	+				+0.3
1,030,595	-				-2.8
1,030,742	+		ABZR87_RS20700	0.11	+0.5
1,030,742	+		ABZR87_RS20700	0.11	+0.7
1,030,906	+		ABZR87_RS20700	0.14	-1.4
1,030,907	-		ABZR87_RS20700	0.14	-0.3
1,030,907	-		ABZR87_RS20700	0.14	+1.6
1,031,067	+		ABZR87_RS20700	0.17	+1.0
1,031,067	+		ABZR87_RS20700	0.17	-3.5
1,031,111	+		ABZR87_RS20700	0.18	+1.5
1,031,112	-		ABZR87_RS20700	0.18	+1.4
1,031,112	-		ABZR87_RS20700	0.18	-0.5
1,031,248	+		ABZR87_RS20700	0.21	-1.2
1,031,248	+		ABZR87_RS20700	0.21	+0.4
1,031,263	+		ABZR87_RS20700	0.21	+1.0
1,031,264	-		ABZR87_RS20700	0.21	-0.9
1,031,352	-		ABZR87_RS20700	0.23	-2.2
1,031,353	+		ABZR87_RS20700	0.23	+0.4
1,031,353	+		ABZR87_RS20700	0.23	-4.4
1,031,354	-		ABZR87_RS20700	0.23	+0.7
1,031,354	-		ABZR87_RS20700	0.23	+1.0
1,031,354	-		ABZR87_RS20700	0.23	+1.0
1,031,354	-		ABZR87_RS20700	0.23	+0.5
1,031,431	-		ABZR87_RS20700	0.24	-1.5
1,031,522	-		ABZR87_RS20700	0.26	+2.5
1,031,525	+		ABZR87_RS20700	0.26	+1.6
1,031,526	-		ABZR87_RS20700	0.26	-2.4
1,031,850	+		ABZR87_RS20700	0.32	-3.7
1,031,850	+		ABZR87_RS20700	0.32	+0.4
1,032,076	+		ABZR87_RS20700	0.36	+0.4
1,032,137	-		ABZR87_RS20700	0.37	-1.3
1,032,337	+		ABZR87_RS20700	0.41	+0.1
1,032,337	+		ABZR87_RS20700	0.41	-0.1
1,032,404	+		ABZR87_RS20700	0.42	-3.7
1,032,405	-		ABZR87_RS20700	0.42	+0.9
1,032,427	+		ABZR87_RS20700	0.43	+3.5
1,032,427	+		ABZR87_RS20700	0.43	-2.0
1,032,427	+		ABZR87_RS20700	0.43	-0.7
1,032,428	-		ABZR87_RS20700	0.43	-0.4
1,032,428	-		ABZR87_RS20700	0.43	+0.2
1,032,437	+		ABZR87_RS20700	0.43	-1.0
1,032,437	+		ABZR87_RS20700	0.43	-0.9
1,032,457	+		ABZR87_RS20700	0.43	-0.3
1,032,457	+		ABZR87_RS20700	0.43	+1.7
1,032,457	+		ABZR87_RS20700	0.43	-2.1
1,032,458	-		ABZR87_RS20700	0.43	+0.4
1,032,499	+		ABZR87_RS20700	0.44	-0.9
1,032,500	-		ABZR87_RS20700	0.44	-2.9
1,032,598	+		ABZR87_RS20700	0.46	-3.0
1,032,598	+		ABZR87_RS20700	0.46	+0.7
1,032,598	+		ABZR87_RS20700	0.46	-2.3
1,032,598	+		ABZR87_RS20700	0.46	+1.2
1,032,598	+		ABZR87_RS20700	0.46	+0.2
1,032,598	+		ABZR87_RS20700	0.46	+0.2
1,032,598	+		ABZR87_RS20700	0.46	-4.6
1,032,599	-		ABZR87_RS20700	0.46	+0.5
1,032,599	-		ABZR87_RS20700	0.46	+0.6
1,032,673	+		ABZR87_RS20700	0.47	-3.8
1,032,674	-		ABZR87_RS20700	0.47	+0.2
1,032,736	+		ABZR87_RS20700	0.48	+2.3
1,032,737	-		ABZR87_RS20700	0.48	-0.7
1,032,737	-		ABZR87_RS20700	0.48	-1.9
1,032,737	-		ABZR87_RS20700	0.48	-0.6
1,032,737	-		ABZR87_RS20700	0.48	-0.3
1,033,022	-		ABZR87_RS20700	0.54	-1.1
1,033,196	+		ABZR87_RS20700	0.57	-0.1
1,033,197	-		ABZR87_RS20700	0.57	-3.6
1,033,197	-		ABZR87_RS20700	0.57	-2.2
1,033,202	+		ABZR87_RS20700	0.57	+0.9
1,033,202	+		ABZR87_RS20700	0.57	+1.9
1,033,203	-		ABZR87_RS20700	0.57	-0.8
1,033,433	-		ABZR87_RS20700	0.61	-1.1
1,033,433	-		ABZR87_RS20700	0.61	-1.9
1,033,532	+		ABZR87_RS20700	0.63	+0.2
1,033,532	+		ABZR87_RS20700	0.63	+2.7
1,033,532	+		ABZR87_RS20700	0.63	-4.0
1,033,532	+		ABZR87_RS20700	0.63	-4.0
1,033,532	+		ABZR87_RS20700	0.63	-3.7
1,033,708	+		ABZR87_RS20700	0.66	-3.0
1,033,708	+		ABZR87_RS20700	0.66	+0.7
1,033,708	+		ABZR87_RS20700	0.66	-2.7
1,033,709	-		ABZR87_RS20700	0.66	-0.3
1,033,709	-		ABZR87_RS20700	0.66	-0.0
1,034,061	+		ABZR87_RS20700	0.73	+1.0
1,034,107	+		ABZR87_RS20700	0.74	-1.8
1,034,107	+		ABZR87_RS20700	0.74	+0.8
1,034,107	+		ABZR87_RS20700	0.74	+0.9
1,034,108	-		ABZR87_RS20700	0.74	-1.5
1,034,621	-		ABZR87_RS20700	0.83	-1.3
1,034,621	-		ABZR87_RS20700	0.83	-1.4
1,034,761	+		ABZR87_RS20700	0.86	-2.9
1,034,761	+		ABZR87_RS20700	0.86	+0.7
1,034,761	+		ABZR87_RS20700	0.86	-0.5
1,034,761	+		ABZR87_RS20700	0.86	-3.1
1,034,762	-		ABZR87_RS20700	0.86	-0.3
1,034,933	+		ABZR87_RS20700	0.89	-0.9
1,034,934	-		ABZR87_RS20700	0.89	-0.1
1,035,333	+				+1.5
1,035,338	-				+1.1
1,035,338	-				-2.5
1,035,536	+				+0.7
1,035,536	+				-0.3
1,035,537	-				+0.9
1,035,537	-				+1.2
1,035,537	-				-0.9
1,035,537	-				-1.7
1,035,548	+				-0.7
1,035,548	+				+1.5
1,035,548	+				-1.0
1,035,548	+				-0.0
1,035,548	+				-0.4
1,035,548	+				-0.6
1,035,548	+				-2.1
1,035,548	+				-3.3
1,035,549	-				-0.5
1,035,549	-				-2.1
1,035,569	+				+1.9
1,035,570	-				+0.9
1,035,622	+				+1.2
1,035,622	+				-2.4
1,035,622	+				+0.3
1,035,623	-				-3.6
1,035,623	-				+0.1
1,035,623	-				-2.0
1,035,623	-				-0.4
1,035,623	-				+0.5
1,035,668	+				+0.1
1,035,669	-				-2.9
1,035,704	-				+1.8
1,035,739	+		ABZR87_RS20705	0.11	+1.4
1,035,739	+		ABZR87_RS20705	0.11	-2.4
1,035,739	+		ABZR87_RS20705	0.11	+2.5
1,035,740	-		ABZR87_RS20705	0.11	-2.2
1,035,740	-		ABZR87_RS20705	0.11	+1.2
1,035,740	-		ABZR87_RS20705	0.11	-0.7
1,035,740	-		ABZR87_RS20705	0.11	+0.1
1,035,740	-		ABZR87_RS20705	0.11	+1.0
1,035,740	-		ABZR87_RS20705	0.11	+0.8
1,035,818	-		ABZR87_RS20705	0.28	+0.5
1,035,818	-		ABZR87_RS20705	0.28	-0.1
1,035,889	+		ABZR87_RS20705	0.43	-0.7
1,035,889	+		ABZR87_RS20705	0.43	+0.7
1,035,980	-		ABZR87_RS20705	0.63	+0.2
1,035,980	-		ABZR87_RS20705	0.63	+0.8
1,036,063	+		ABZR87_RS20705	0.80	+2.8
1,036,063	+		ABZR87_RS20705	0.80	+0.4
1,036,064	-		ABZR87_RS20705	0.81	+2.3
1,036,075	+		ABZR87_RS20705	0.83	-0.6
1,036,076	-		ABZR87_RS20705	0.83	-0.8
1,036,076	-		ABZR87_RS20705	0.83	+1.9
1,036,225	-				+0.8
1,036,322	+				+0.7
1,036,332	+				+0.0
1,036,333	-				-3.7
1,036,333	-				-1.8
1,036,333	-				+0.2
1,036,412	+		ABZR87_RS20710	0.16	+0.7
1,036,412	+		ABZR87_RS20710	0.16	+0.4
1,036,412	+		ABZR87_RS20710	0.16	-1.2
1,036,412	+		ABZR87_RS20710	0.16	+0.9
1,036,413	-		ABZR87_RS20710	0.16	-2.1
1,036,413	-		ABZR87_RS20710	0.16	+0.7
1,036,418	+		ABZR87_RS20710	0.17	-3.7
1,036,418	+		ABZR87_RS20710	0.17	+1.0
1,036,419	-		ABZR87_RS20710	0.17	-1.0
1,036,419	-		ABZR87_RS20710	0.17	-3.0
1,036,419	-		ABZR87_RS20710	0.17	-2.7