Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19430 and ABZR87_RS19435 overlap by 4 nucleotides ABZR87_RS19435 and ABZR87_RS19440 are separated by 193 nucleotides ABZR87_RS19440 and ABZR87_RS19445 overlap by 4 nucleotides
ABZR87_RS19430: ABZR87_RS19430 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 728,297 to 729,727
_RS19430
ABZR87_RS19435: ABZR87_RS19435 - trehalose-phosphatase, at 729,724 to 730,524
_RS19435
ABZR87_RS19440: ABZR87_RS19440 - 2OG-Fe(II) oxygenase, at 730,718 to 731,377
_RS19440
ABZR87_RS19445: ABZR87_RS19445 - hypothetical protein, at 731,374 to 732,255
_RS19445
Position (kb) 729
730
731 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.751 kb on + strand, within ABZR87_RS19430 at 728.752 kb on - strand, within ABZR87_RS19430 at 728.752 kb on - strand, within ABZR87_RS19430 at 729.045 kb on + strand, within ABZR87_RS19430 at 729.111 kb on + strand, within ABZR87_RS19430 at 729.112 kb on - strand, within ABZR87_RS19430 at 729.112 kb on - strand, within ABZR87_RS19430 at 729.112 kb on - strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.135 kb on + strand, within ABZR87_RS19430 at 729.136 kb on - strand, within ABZR87_RS19430 at 729.186 kb on + strand, within ABZR87_RS19430 at 729.186 kb on + strand, within ABZR87_RS19430 at 729.186 kb on + strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.187 kb on - strand, within ABZR87_RS19430 at 729.330 kb on + strand, within ABZR87_RS19430 at 729.331 kb on - strand, within ABZR87_RS19430 at 729.331 kb on - strand, within ABZR87_RS19430 at 729.417 kb on + strand, within ABZR87_RS19430 at 729.417 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.498 kb on + strand, within ABZR87_RS19430 at 729.499 kb on - strand, within ABZR87_RS19430 at 729.499 kb on - strand, within ABZR87_RS19430 at 729.499 kb on - strand, within ABZR87_RS19430 at 729.508 kb on - strand, within ABZR87_RS19430 at 729.508 kb on - strand, within ABZR87_RS19430 at 729.508 kb on - strand, within ABZR87_RS19430 at 729.538 kb on - strand, within ABZR87_RS19430 at 729.538 kb on - strand, within ABZR87_RS19430 at 730.025 kb on + strand, within ABZR87_RS19435 at 730.026 kb on - strand, within ABZR87_RS19435 at 730.089 kb on - strand, within ABZR87_RS19435 at 730.235 kb on + strand, within ABZR87_RS19435 at 730.235 kb on + strand, within ABZR87_RS19435 at 730.549 kb on + strand at 730.550 kb on - strand at 730.550 kb on - strand at 730.550 kb on - strand at 730.647 kb on - strand at 730.647 kb on - strand at 730.899 kb on + strand, within ABZR87_RS19440 at 730.899 kb on + strand, within ABZR87_RS19440 at 730.899 kb on + strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.900 kb on - strand, within ABZR87_RS19440 at 730.948 kb on - strand, within ABZR87_RS19440 at 730.948 kb on - strand, within ABZR87_RS19440 at 730.950 kb on + strand, within ABZR87_RS19440 at 730.951 kb on - strand, within ABZR87_RS19440 at 730.951 kb on - strand, within ABZR87_RS19440 at 731.103 kb on + strand, within ABZR87_RS19440 at 731.223 kb on + strand, within ABZR87_RS19440 at 731.223 kb on + strand, within ABZR87_RS19440 at 731.408 kb on + strand at 731.408 kb on + strand at 731.408 kb on + strand at 731.408 kb on + strand at 731.409 kb on - strand at 731.409 kb on - strand at 731.484 kb on - strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.510 kb on + strand, within ABZR87_RS19445 at 731.518 kb on + strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445 at 731.519 kb on - strand, within ABZR87_RS19445
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 728,751 + ABZR87_RS19430 0.32 -2.3 728,751 + ABZR87_RS19430 0.32 +0.1 728,751 + ABZR87_RS19430 0.32 -0.9 728,751 + ABZR87_RS19430 0.32 +1.2 728,752 - ABZR87_RS19430 0.32 +1.3 728,752 - ABZR87_RS19430 0.32 +1.9 729,045 + ABZR87_RS19430 0.52 -3.5 729,111 + ABZR87_RS19430 0.57 -4.3 729,112 - ABZR87_RS19430 0.57 -0.6 729,112 - ABZR87_RS19430 0.57 -1.6 729,112 - ABZR87_RS19430 0.57 +1.1 729,135 + ABZR87_RS19430 0.59 -4.0 729,135 + ABZR87_RS19430 0.59 -0.2 729,135 + ABZR87_RS19430 0.59 -0.5 729,135 + ABZR87_RS19430 0.59 +0.1 729,136 - ABZR87_RS19430 0.59 +1.3 729,186 + ABZR87_RS19430 0.62 +0.1 729,186 + ABZR87_RS19430 0.62 +1.4 729,186 + ABZR87_RS19430 0.62 -1.5 729,187 - ABZR87_RS19430 0.62 -1.2 729,187 - ABZR87_RS19430 0.62 -0.1 729,187 - ABZR87_RS19430 0.62 +0.1 729,187 - ABZR87_RS19430 0.62 +0.7 729,187 - ABZR87_RS19430 0.62 +0.3 729,187 - ABZR87_RS19430 0.62 +1.5 729,187 - ABZR87_RS19430 0.62 +0.5 729,330 + ABZR87_RS19430 0.72 -0.4 729,331 - ABZR87_RS19430 0.72 +0.5 729,331 - ABZR87_RS19430 0.72 +1.2 729,417 + ABZR87_RS19430 0.78 -0.1 729,417 + ABZR87_RS19430 0.78 +0.5 729,498 + ABZR87_RS19430 0.84 -3.7 729,498 + ABZR87_RS19430 0.84 +1.6 729,498 + ABZR87_RS19430 0.84 -0.3 729,498 + ABZR87_RS19430 0.84 -1.4 729,498 + ABZR87_RS19430 0.84 -4.2 729,499 - ABZR87_RS19430 0.84 +0.3 729,499 - ABZR87_RS19430 0.84 -2.2 729,499 - ABZR87_RS19430 0.84 -1.0 729,508 - ABZR87_RS19430 0.85 -0.8 729,508 - ABZR87_RS19430 0.85 -3.4 729,508 - ABZR87_RS19430 0.85 +0.4 729,538 - ABZR87_RS19430 0.87 +0.1 729,538 - ABZR87_RS19430 0.87 -0.2 730,025 + ABZR87_RS19435 0.38 -1.2 730,026 - ABZR87_RS19435 0.38 -0.8 730,089 - ABZR87_RS19435 0.46 +0.7 730,235 + ABZR87_RS19435 0.64 -2.6 730,235 + ABZR87_RS19435 0.64 +0.6 730,549 + +1.0 730,550 - +0.3 730,550 - -0.3 730,550 - -0.5 730,647 - +0.3 730,647 - +1.8 730,899 + ABZR87_RS19440 0.27 +0.5 730,899 + ABZR87_RS19440 0.27 -3.3 730,899 + ABZR87_RS19440 0.27 -0.1 730,900 - ABZR87_RS19440 0.28 -1.5 730,900 - ABZR87_RS19440 0.28 -0.6 730,900 - ABZR87_RS19440 0.28 -0.9 730,900 - ABZR87_RS19440 0.28 +0.9 730,948 - ABZR87_RS19440 0.35 +1.2 730,948 - ABZR87_RS19440 0.35 +1.6 730,950 + ABZR87_RS19440 0.35 -1.8 730,951 - ABZR87_RS19440 0.35 -3.7 730,951 - ABZR87_RS19440 0.35 -1.6 731,103 + ABZR87_RS19440 0.58 +1.1 731,223 + ABZR87_RS19440 0.77 +0.2 731,223 + ABZR87_RS19440 0.77 -0.1 731,408 + -1.8 731,408 + +0.8 731,408 + +0.6 731,408 + -1.8 731,409 - +1.4 731,409 - +0.6 731,484 - ABZR87_RS19445 0.12 +1.5 731,510 + ABZR87_RS19445 0.15 -1.5 731,510 + ABZR87_RS19445 0.15 +0.6 731,510 + ABZR87_RS19445 0.15 -2.3 731,510 + ABZR87_RS19445 0.15 +0.9 731,518 + ABZR87_RS19445 0.16 +1.0 731,519 - ABZR87_RS19445 0.16 +0.1 731,519 - ABZR87_RS19445 0.16 -3.4 731,519 - ABZR87_RS19445 0.16 +0.8 731,519 - ABZR87_RS19445 0.16 +0.7
Or see this region's nucleotide sequence