Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19365 and ABZR87_RS19370 overlap by 4 nucleotides ABZR87_RS19370 and ABZR87_RS19375 are separated by 10 nucleotides ABZR87_RS19375 and ABZR87_RS19380 overlap by 4 nucleotides
ABZR87_RS19365: ABZR87_RS19365 - glycosyltransferase, at 711,084 to 712,409
_RS19365
ABZR87_RS19370: ABZR87_RS19370 - hypothetical protein, at 712,406 to 713,449
_RS19370
ABZR87_RS19375: ABZR87_RS19375 - hypothetical protein, at 713,460 to 714,446
_RS19375
ABZR87_RS19380: ABZR87_RS19380 - polysaccharide deacetylase family protein, at 714,443 to 716,293
_RS19380
Position (kb) 712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 711.522 kb on + strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.666 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.840 kb on + strand, within ABZR87_RS19365 at 711.861 kb on + strand, within ABZR87_RS19365 at 712.074 kb on + strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.132 kb on - strand, within ABZR87_RS19365 at 712.132 kb on - strand, within ABZR87_RS19365 at 712.183 kb on - strand, within ABZR87_RS19365 at 712.183 kb on - strand, within ABZR87_RS19365 at 712.629 kb on - strand, within ABZR87_RS19370 at 712.794 kb on - strand, within ABZR87_RS19370 at 713.132 kb on + strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.416 kb on + strand at 713.619 kb on + strand, within ABZR87_RS19375 at 713.619 kb on + strand, within ABZR87_RS19375 at 713.620 kb on - strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.950 kb on - strand, within ABZR87_RS19375 at 713.950 kb on - strand, within ABZR87_RS19375 at 714.021 kb on + strand, within ABZR87_RS19375 at 714.021 kb on + strand, within ABZR87_RS19375 at 714.085 kb on - strand, within ABZR87_RS19375 at 714.091 kb on - strand, within ABZR87_RS19375 at 714.177 kb on + strand, within ABZR87_RS19375 at 714.178 kb on - strand, within ABZR87_RS19375
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 711,522 + ABZR87_RS19365 0.33 -0.4 711,523 - ABZR87_RS19365 0.33 +0.1 711,523 - ABZR87_RS19365 0.33 -0.2 711,523 - ABZR87_RS19365 0.33 +0.4 711,666 + ABZR87_RS19365 0.44 +0.6 711,714 + ABZR87_RS19365 0.48 +1.2 711,714 + ABZR87_RS19365 0.48 -2.0 711,840 + ABZR87_RS19365 0.57 -2.8 711,861 + ABZR87_RS19365 0.59 -1.9 712,074 + ABZR87_RS19365 0.75 -0.5 712,075 - ABZR87_RS19365 0.75 -0.5 712,075 - ABZR87_RS19365 0.75 -3.3 712,075 - ABZR87_RS19365 0.75 -0.4 712,075 - ABZR87_RS19365 0.75 +1.2 712,132 - ABZR87_RS19365 0.79 -0.0 712,132 - ABZR87_RS19365 0.79 +0.9 712,183 - ABZR87_RS19365 0.83 -1.6 712,183 - ABZR87_RS19365 0.83 +1.8 712,629 - ABZR87_RS19370 0.21 -0.7 712,794 - ABZR87_RS19370 0.37 +0.2 713,132 + ABZR87_RS19370 0.70 -2.6 713,133 - ABZR87_RS19370 0.70 +0.6 713,133 - ABZR87_RS19370 0.70 -2.7 713,416 + -2.1 713,619 + ABZR87_RS19375 0.16 -2.3 713,619 + ABZR87_RS19375 0.16 -2.5 713,620 - ABZR87_RS19375 0.16 -1.9 713,949 + ABZR87_RS19375 0.50 -0.8 713,949 + ABZR87_RS19375 0.50 +0.2 713,949 + ABZR87_RS19375 0.50 -0.9 713,950 - ABZR87_RS19375 0.50 +0.6 713,950 - ABZR87_RS19375 0.50 -0.2 714,021 + ABZR87_RS19375 0.57 -0.7 714,021 + ABZR87_RS19375 0.57 +1.6 714,085 - ABZR87_RS19375 0.63 -2.3 714,091 - ABZR87_RS19375 0.64 -0.6 714,177 + ABZR87_RS19375 0.73 +0.5 714,178 - ABZR87_RS19375 0.73 -2.9
Or see this region's nucleotide sequence