Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19335 and ABZR87_RS19340 are separated by 310 nucleotides ABZR87_RS19340 and ABZR87_RS19345 are separated by 37 nucleotides
ABZR87_RS19335: ABZR87_RS19335 - glutamate cyclase domain-containing protein, at 696,928 to 704,658
_RS19335
ABZR87_RS19340: ABZR87_RS19340 - LysR family transcriptional regulator, at 704,969 to 705,913
_RS19340
ABZR87_RS19345: ABZR87_RS19345 - glutaminase, at 705,951 to 706,865
_RS19345
Position (kb) 704
705
706 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 704.072 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.502 kb on - strand at 704.502 kb on - strand at 704.502 kb on - strand at 704.618 kb on + strand at 704.619 kb on - strand at 704.760 kb on + strand at 704.760 kb on + strand at 704.760 kb on + strand at 704.760 kb on + strand at 704.761 kb on - strand at 704.761 kb on - strand at 704.764 kb on + strand at 704.765 kb on - strand at 704.765 kb on - strand at 704.797 kb on + strand at 704.804 kb on + strand at 704.804 kb on + strand at 704.805 kb on - strand at 704.805 kb on - strand at 704.805 kb on - strand at 704.807 kb on + strand at 704.839 kb on + strand at 704.947 kb on - strand at 704.954 kb on + strand at 704.955 kb on - strand at 704.955 kb on - strand at 704.955 kb on - strand at 704.976 kb on + strand at 704.977 kb on - strand at 705.167 kb on + strand, within ABZR87_RS19340 at 705.168 kb on - strand, within ABZR87_RS19340 at 705.869 kb on + strand at 705.926 kb on - strand at 706.123 kb on + strand, within ABZR87_RS19345 at 706.123 kb on + strand, within ABZR87_RS19345 at 706.303 kb on + strand, within ABZR87_RS19345 at 706.420 kb on + strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.817 kb on - strand at 706.858 kb on + strand at 706.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 704,072 + +0.8 704,501 + +0.3 704,501 + +0.9 704,501 + -0.1 704,501 + -2.8 704,501 + +0.9 704,501 + +2.1 704,502 - +1.2 704,502 - +0.4 704,502 - +0.5 704,618 + -1.0 704,619 - -0.1 704,760 + +0.2 704,760 + -0.2 704,760 + -1.6 704,760 + -1.7 704,761 - -2.9 704,761 - -2.9 704,764 + -0.3 704,765 - +0.0 704,765 - +0.2 704,797 + -0.2 704,804 + -0.3 704,804 + +0.0 704,805 - -1.8 704,805 - -0.5 704,805 - +0.2 704,807 + +2.0 704,839 + -1.8 704,947 - -1.2 704,954 + -0.7 704,955 - -2.9 704,955 - -3.3 704,955 - -0.8 704,976 + -4.0 704,977 - +0.9 705,167 + ABZR87_RS19340 0.21 +0.5 705,168 - ABZR87_RS19340 0.21 -3.3 705,869 + -4.0 705,926 - +0.8 706,123 + ABZR87_RS19345 0.19 -2.1 706,123 + ABZR87_RS19345 0.19 -3.6 706,303 + ABZR87_RS19345 0.38 +1.2 706,420 + ABZR87_RS19345 0.51 +1.5 706,421 - ABZR87_RS19345 0.51 +0.1 706,421 - ABZR87_RS19345 0.51 -2.0 706,421 - ABZR87_RS19345 0.51 +0.5 706,789 + -0.1 706,789 + -2.3 706,789 + +0.3 706,789 + -3.0 706,789 + +0.1 706,790 - -0.7 706,790 - -1.6 706,790 - +1.1 706,790 - -1.4 706,790 - +6.4 706,790 - -3.2 706,790 - -2.0 706,817 - +0.7 706,858 + -1.5 706,858 + +1.0
Or see this region's nucleotide sequence