Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18940 and ABZR87_RS18945 are separated by 132 nucleotides ABZR87_RS18945 and ABZR87_RS18950 are separated by 71 nucleotides
ABZR87_RS18940: ABZR87_RS18940 - quinone oxidoreductase, at 605,298 to 606,278
_RS18940
ABZR87_RS18945: ABZR87_RS18945 - MFS transporter, at 606,411 to 607,748
_RS18945
ABZR87_RS18950: ABZR87_RS18950 - 3-keto-5-aminohexanoate cleavage protein, at 607,820 to 608,875
_RS18950
Position (kb) 606
607
608 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 605.470 kb on + strand, within ABZR87_RS18940 at 605.470 kb on + strand, within ABZR87_RS18940 at 605.471 kb on - strand, within ABZR87_RS18940 at 605.498 kb on - strand, within ABZR87_RS18940 at 605.701 kb on + strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.869 kb on + strand, within ABZR87_RS18940 at 605.870 kb on - strand, within ABZR87_RS18940 at 605.887 kb on + strand, within ABZR87_RS18940 at 605.993 kb on - strand, within ABZR87_RS18940 at 606.125 kb on - strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.282 kb on + strand at 606.282 kb on + strand at 606.295 kb on - strand at 606.494 kb on - strand at 606.494 kb on - strand at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.679 kb on - strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.166 kb on - strand, within ABZR87_RS18945 at 607.166 kb on - strand, within ABZR87_RS18945 at 607.414 kb on + strand, within ABZR87_RS18945 at 607.414 kb on + strand, within ABZR87_RS18945 at 607.415 kb on - strand, within ABZR87_RS18945 at 607.415 kb on - strand, within ABZR87_RS18945 at 607.455 kb on + strand, within ABZR87_RS18945 at 607.456 kb on - strand, within ABZR87_RS18945 at 607.456 kb on - strand, within ABZR87_RS18945 at 607.456 kb on - strand, within ABZR87_RS18945 at 607.639 kb on + strand at 607.639 kb on + strand at 607.640 kb on - strand at 607.640 kb on - strand at 607.705 kb on + strand at 607.706 kb on - strand at 607.821 kb on + strand at 607.908 kb on + strand at 607.909 kb on - strand at 607.909 kb on - strand at 607.927 kb on - strand, within ABZR87_RS18950 at 607.927 kb on - strand, within ABZR87_RS18950 at 607.927 kb on - strand, within ABZR87_RS18950 at 608.241 kb on + strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.386 kb on - strand, within ABZR87_RS18950 at 608.430 kb on + strand, within ABZR87_RS18950 at 608.725 kb on - strand, within ABZR87_RS18950
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 605,470 + ABZR87_RS18940 0.18 -1.2 605,470 + ABZR87_RS18940 0.18 +0.7 605,471 - ABZR87_RS18940 0.18 +2.7 605,498 - ABZR87_RS18940 0.20 -1.1 605,701 + ABZR87_RS18940 0.41 +0.2 605,702 - ABZR87_RS18940 0.41 -3.5 605,702 - ABZR87_RS18940 0.41 +0.6 605,869 + ABZR87_RS18940 0.58 -3.8 605,870 - ABZR87_RS18940 0.58 -0.8 605,887 + ABZR87_RS18940 0.60 -2.7 605,993 - ABZR87_RS18940 0.71 +0.3 606,125 - ABZR87_RS18940 0.84 +1.6 606,142 + ABZR87_RS18940 0.86 -1.9 606,142 + ABZR87_RS18940 0.86 -3.3 606,142 + ABZR87_RS18940 0.86 -2.1 606,142 + ABZR87_RS18940 0.86 +0.2 606,143 - ABZR87_RS18940 0.86 +1.2 606,143 - ABZR87_RS18940 0.86 +0.2 606,282 + -0.8 606,282 + -1.7 606,295 - +0.8 606,494 - +1.3 606,494 - +1.1 606,678 + ABZR87_RS18945 0.20 -1.4 606,678 + ABZR87_RS18945 0.20 +0.0 606,678 + ABZR87_RS18945 0.20 +1.0 606,678 + ABZR87_RS18945 0.20 -0.0 606,678 + ABZR87_RS18945 0.20 -0.2 606,678 + ABZR87_RS18945 0.20 +0.6 606,678 + ABZR87_RS18945 0.20 +0.7 606,679 - ABZR87_RS18945 0.20 -3.1 607,165 + ABZR87_RS18945 0.56 +0.3 607,165 + ABZR87_RS18945 0.56 -3.3 607,165 + ABZR87_RS18945 0.56 -2.6 607,165 + ABZR87_RS18945 0.56 -1.5 607,165 + ABZR87_RS18945 0.56 -0.7 607,165 + ABZR87_RS18945 0.56 -1.5 607,166 - ABZR87_RS18945 0.56 -2.8 607,166 - ABZR87_RS18945 0.56 -0.1 607,414 + ABZR87_RS18945 0.75 -2.5 607,414 + ABZR87_RS18945 0.75 -2.7 607,415 - ABZR87_RS18945 0.75 -4.5 607,415 - ABZR87_RS18945 0.75 -2.2 607,455 + ABZR87_RS18945 0.78 -3.4 607,456 - ABZR87_RS18945 0.78 +1.9 607,456 - ABZR87_RS18945 0.78 +1.5 607,456 - ABZR87_RS18945 0.78 +0.2 607,639 + -1.7 607,639 + +1.2 607,640 - +0.2 607,640 - -3.4 607,705 + +0.3 607,706 - +1.2 607,821 + -2.9 607,908 + +0.4 607,909 - -0.2 607,909 - -0.2 607,927 - ABZR87_RS18950 0.10 -2.8 607,927 - ABZR87_RS18950 0.10 -2.9 607,927 - ABZR87_RS18950 0.10 +1.8 608,241 + ABZR87_RS18950 0.40 +1.2 608,242 - ABZR87_RS18950 0.40 +0.9 608,242 - ABZR87_RS18950 0.40 +1.4 608,242 - ABZR87_RS18950 0.40 -1.3 608,242 - ABZR87_RS18950 0.40 +0.2 608,386 - ABZR87_RS18950 0.54 +1.8 608,430 + ABZR87_RS18950 0.58 -0.1 608,725 - ABZR87_RS18950 0.86 +1.0
Or see this region's nucleotide sequence