Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18885 and ABZR87_RS18890 are separated by 180 nucleotides ABZR87_RS18890 and ABZR87_RS18895 overlap by 8 nucleotides
ABZR87_RS18885: ABZR87_RS18885 - nitrate reductase, at 590,391 to 593,126
_RS18885
ABZR87_RS18890: ABZR87_RS18890 - hypothetical protein, at 593,307 to 594,866
_RS18890
ABZR87_RS18895: ABZR87_RS18895 - DUF3274 domain-containing protein, at 594,859 to 597,369
_RS18895
Position (kb) 593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 592.653 kb on + strand, within ABZR87_RS18885 at 592.653 kb on + strand, within ABZR87_RS18885 at 592.653 kb on + strand, within ABZR87_RS18885 at 592.654 kb on - strand, within ABZR87_RS18885 at 592.654 kb on - strand, within ABZR87_RS18885 at 592.654 kb on - strand, within ABZR87_RS18885 at 592.746 kb on + strand, within ABZR87_RS18885 at 593.204 kb on + strand at 593.204 kb on + strand at 593.205 kb on - strand at 593.205 kb on - strand at 593.205 kb on - strand at 593.264 kb on - strand at 593.284 kb on + strand at 593.284 kb on + strand at 593.285 kb on - strand at 593.285 kb on - strand at 593.292 kb on - strand at 593.308 kb on + strand at 593.308 kb on + strand at 593.308 kb on + strand at 593.308 kb on + strand at 593.308 kb on + strand at 593.309 kb on - strand at 593.309 kb on - strand at 593.309 kb on - strand at 593.309 kb on - strand at 593.309 kb on - strand at 593.345 kb on - strand at 593.535 kb on + strand, within ABZR87_RS18890 at 593.535 kb on + strand, within ABZR87_RS18890 at 593.535 kb on + strand, within ABZR87_RS18890 at 593.535 kb on + strand, within ABZR87_RS18890 at 593.535 kb on + strand, within ABZR87_RS18890 at 593.535 kb on + strand, within ABZR87_RS18890 at 593.536 kb on - strand, within ABZR87_RS18890 at 593.536 kb on - strand, within ABZR87_RS18890 at 593.671 kb on + strand, within ABZR87_RS18890 at 593.672 kb on - strand, within ABZR87_RS18890 at 593.794 kb on + strand, within ABZR87_RS18890 at 593.794 kb on + strand, within ABZR87_RS18890 at 593.794 kb on + strand, within ABZR87_RS18890 at 593.795 kb on - strand, within ABZR87_RS18890 at 593.795 kb on - strand, within ABZR87_RS18890 at 593.908 kb on + strand, within ABZR87_RS18890 at 593.944 kb on + strand, within ABZR87_RS18890 at 593.944 kb on + strand, within ABZR87_RS18890 at 593.944 kb on + strand, within ABZR87_RS18890 at 593.968 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.172 kb on + strand, within ABZR87_RS18890 at 594.173 kb on - strand, within ABZR87_RS18890 at 594.308 kb on + strand, within ABZR87_RS18890 at 594.308 kb on + strand, within ABZR87_RS18890 at 594.309 kb on - strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.310 kb on + strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.311 kb on - strand, within ABZR87_RS18890 at 594.320 kb on + strand, within ABZR87_RS18890 at 594.320 kb on + strand, within ABZR87_RS18890 at 594.400 kb on + strand, within ABZR87_RS18890 at 594.401 kb on - strand, within ABZR87_RS18890 at 594.401 kb on - strand, within ABZR87_RS18890 at 594.406 kb on + strand, within ABZR87_RS18890 at 594.407 kb on - strand, within ABZR87_RS18890 at 594.424 kb on + strand, within ABZR87_RS18890 at 594.430 kb on + strand, within ABZR87_RS18890 at 594.431 kb on - strand, within ABZR87_RS18890 at 594.443 kb on - strand, within ABZR87_RS18890 at 594.481 kb on + strand, within ABZR87_RS18890 at 594.481 kb on + strand, within ABZR87_RS18890 at 594.481 kb on + strand, within ABZR87_RS18890 at 594.482 kb on - strand, within ABZR87_RS18890 at 594.680 kb on - strand, within ABZR87_RS18890 at 594.680 kb on - strand, within ABZR87_RS18890 at 594.709 kb on - strand, within ABZR87_RS18890 at 594.709 kb on - strand, within ABZR87_RS18890 at 594.740 kb on + strand at 594.741 kb on - strand at 594.755 kb on - strand at 594.785 kb on + strand at 594.786 kb on - strand at 594.991 kb on + strand at 594.991 kb on + strand at 594.991 kb on + strand at 595.073 kb on + strand at 595.081 kb on + strand at 595.081 kb on + strand at 595.081 kb on + strand at 595.082 kb on - strand at 595.082 kb on - strand at 595.082 kb on - strand at 595.082 kb on - strand at 595.145 kb on + strand, within ABZR87_RS18895 at 595.196 kb on + strand, within ABZR87_RS18895 at 595.197 kb on - strand, within ABZR87_RS18895 at 595.197 kb on - strand, within ABZR87_RS18895 at 595.199 kb on + strand, within ABZR87_RS18895 at 595.200 kb on - strand, within ABZR87_RS18895 at 595.317 kb on - strand, within ABZR87_RS18895 at 595.591 kb on + strand, within ABZR87_RS18895 at 595.592 kb on - strand, within ABZR87_RS18895 at 595.592 kb on - strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.607 kb on + strand, within ABZR87_RS18895 at 595.608 kb on - strand, within ABZR87_RS18895 at 595.608 kb on - strand, within ABZR87_RS18895 at 595.608 kb on - strand, within ABZR87_RS18895 at 595.769 kb on + strand, within ABZR87_RS18895 at 595.770 kb on - strand, within ABZR87_RS18895 at 595.770 kb on - strand, within ABZR87_RS18895 at 595.785 kb on + strand, within ABZR87_RS18895 at 595.786 kb on - strand, within ABZR87_RS18895 at 595.786 kb on - strand, within ABZR87_RS18895 at 595.789 kb on + strand, within ABZR87_RS18895 at 595.789 kb on + strand, within ABZR87_RS18895 at 595.790 kb on - strand, within ABZR87_RS18895 at 595.821 kb on + strand, within ABZR87_RS18895 at 595.821 kb on + strand, within ABZR87_RS18895 at 595.822 kb on - strand, within ABZR87_RS18895
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 592,653 + ABZR87_RS18885 0.83 -0.4 592,653 + ABZR87_RS18885 0.83 -1.2 592,653 + ABZR87_RS18885 0.83 -0.3 592,654 - ABZR87_RS18885 0.83 -0.1 592,654 - ABZR87_RS18885 0.83 +1.3 592,654 - ABZR87_RS18885 0.83 -3.2 592,746 + ABZR87_RS18885 0.86 -1.7 593,204 + -0.9 593,204 + +0.2 593,205 - -2.2 593,205 - +0.4 593,205 - -3.9 593,264 - -3.3 593,284 + +1.4 593,284 + -0.5 593,285 - -0.9 593,285 - -0.6 593,292 - -2.6 593,308 + -1.5 593,308 + +2.4 593,308 + +1.5 593,308 + -0.8 593,308 + +1.2 593,309 - +1.3 593,309 - -2.6 593,309 - -3.7 593,309 - +0.3 593,309 - -2.0 593,345 - -0.0 593,535 + ABZR87_RS18890 0.15 -0.7 593,535 + ABZR87_RS18890 0.15 +1.1 593,535 + ABZR87_RS18890 0.15 -1.7 593,535 + ABZR87_RS18890 0.15 -0.5 593,535 + ABZR87_RS18890 0.15 -0.2 593,535 + ABZR87_RS18890 0.15 -2.6 593,536 - ABZR87_RS18890 0.15 +1.5 593,536 - ABZR87_RS18890 0.15 +1.5 593,671 + ABZR87_RS18890 0.23 +1.1 593,672 - ABZR87_RS18890 0.23 -4.1 593,794 + ABZR87_RS18890 0.31 +1.7 593,794 + ABZR87_RS18890 0.31 -3.0 593,794 + ABZR87_RS18890 0.31 -0.8 593,795 - ABZR87_RS18890 0.31 -3.2 593,795 - ABZR87_RS18890 0.31 -3.5 593,908 + ABZR87_RS18890 0.39 -0.7 593,944 + ABZR87_RS18890 0.41 -2.8 593,944 + ABZR87_RS18890 0.41 +0.5 593,944 + ABZR87_RS18890 0.41 +0.5 593,968 + ABZR87_RS18890 0.42 -2.7 594,172 + ABZR87_RS18890 0.55 -0.1 594,172 + ABZR87_RS18890 0.55 -0.4 594,172 + ABZR87_RS18890 0.55 +3.4 594,172 + ABZR87_RS18890 0.55 -1.2 594,172 + ABZR87_RS18890 0.55 +1.1 594,173 - ABZR87_RS18890 0.56 +0.4 594,308 + ABZR87_RS18890 0.64 -0.8 594,308 + ABZR87_RS18890 0.64 -3.3 594,309 - ABZR87_RS18890 0.64 -2.5 594,310 + ABZR87_RS18890 0.64 +1.3 594,310 + ABZR87_RS18890 0.64 +0.2 594,310 + ABZR87_RS18890 0.64 +1.8 594,310 + ABZR87_RS18890 0.64 -2.7 594,310 + ABZR87_RS18890 0.64 -0.5 594,310 + ABZR87_RS18890 0.64 +0.6 594,310 + ABZR87_RS18890 0.64 -2.3 594,310 + ABZR87_RS18890 0.64 +1.2 594,310 + ABZR87_RS18890 0.64 -2.3 594,310 + ABZR87_RS18890 0.64 +1.2 594,310 + ABZR87_RS18890 0.64 -1.5 594,311 - ABZR87_RS18890 0.64 -2.9 594,311 - ABZR87_RS18890 0.64 +0.4 594,311 - ABZR87_RS18890 0.64 -2.6 594,311 - ABZR87_RS18890 0.64 +1.2 594,311 - ABZR87_RS18890 0.64 -1.7 594,320 + ABZR87_RS18890 0.65 -0.5 594,320 + ABZR87_RS18890 0.65 -0.2 594,400 + ABZR87_RS18890 0.70 -3.2 594,401 - ABZR87_RS18890 0.70 +0.5 594,401 - ABZR87_RS18890 0.70 -1.3 594,406 + ABZR87_RS18890 0.70 +1.4 594,407 - ABZR87_RS18890 0.71 +0.8 594,424 + ABZR87_RS18890 0.72 -2.8 594,430 + ABZR87_RS18890 0.72 -1.0 594,431 - ABZR87_RS18890 0.72 +0.5 594,443 - ABZR87_RS18890 0.73 -1.3 594,481 + ABZR87_RS18890 0.75 -0.5 594,481 + ABZR87_RS18890 0.75 -3.0 594,481 + ABZR87_RS18890 0.75 +1.7 594,482 - ABZR87_RS18890 0.75 -2.9 594,680 - ABZR87_RS18890 0.88 -2.1 594,680 - ABZR87_RS18890 0.88 +0.2 594,709 - ABZR87_RS18890 0.90 +0.1 594,709 - ABZR87_RS18890 0.90 -0.1 594,740 + +0.8 594,741 - -1.4 594,755 - -0.4 594,785 + -0.2 594,786 - +0.1 594,991 + -0.3 594,991 + +1.5 594,991 + -0.8 595,073 + +1.1 595,081 + -0.5 595,081 + +0.0 595,081 + +0.8 595,082 - +1.0 595,082 - +1.6 595,082 - +0.6 595,082 - -0.8 595,145 + ABZR87_RS18895 0.11 -0.1 595,196 + ABZR87_RS18895 0.13 +0.5 595,197 - ABZR87_RS18895 0.13 +1.0 595,197 - ABZR87_RS18895 0.13 -2.5 595,199 + ABZR87_RS18895 0.14 +0.2 595,200 - ABZR87_RS18895 0.14 -0.5 595,317 - ABZR87_RS18895 0.18 -3.9 595,591 + ABZR87_RS18895 0.29 +2.0 595,592 - ABZR87_RS18895 0.29 -0.1 595,592 - ABZR87_RS18895 0.29 -0.1 595,607 + ABZR87_RS18895 0.30 +0.3 595,607 + ABZR87_RS18895 0.30 -1.7 595,607 + ABZR87_RS18895 0.30 -0.2 595,607 + ABZR87_RS18895 0.30 +1.1 595,607 + ABZR87_RS18895 0.30 +1.2 595,607 + ABZR87_RS18895 0.30 -2.7 595,608 - ABZR87_RS18895 0.30 -1.0 595,608 - ABZR87_RS18895 0.30 +1.5 595,608 - ABZR87_RS18895 0.30 -2.3 595,769 + ABZR87_RS18895 0.36 +1.5 595,770 - ABZR87_RS18895 0.36 +0.1 595,770 - ABZR87_RS18895 0.36 -0.2 595,785 + ABZR87_RS18895 0.37 -1.1 595,786 - ABZR87_RS18895 0.37 +2.1 595,786 - ABZR87_RS18895 0.37 +0.7 595,789 + ABZR87_RS18895 0.37 +0.6 595,789 + ABZR87_RS18895 0.37 -0.1 595,790 - ABZR87_RS18895 0.37 +0.7 595,821 + ABZR87_RS18895 0.38 +0.2 595,821 + ABZR87_RS18895 0.38 -0.5 595,822 - ABZR87_RS18895 0.38 -0.6
Or see this region's nucleotide sequence