Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18805 and ABZR87_RS18810 are separated by 13 nucleotides ABZR87_RS18810 and ABZR87_RS18815 are separated by 187 nucleotides ABZR87_RS18815 and ABZR87_RS18820 are separated by 78 nucleotides
ABZR87_RS18805: ABZR87_RS18805 - hypothetical protein, at 571,484 to 572,410
_RS18805
ABZR87_RS18810: ABZR87_RS18810 - PGDYG domain-containing protein, at 572,424 to 572,855
_RS18810
ABZR87_RS18815: ABZR87_RS18815 - membrane dipeptidase, at 573,043 to 574,470
_RS18815
ABZR87_RS18820: ABZR87_RS18820 - hypothetical protein, at 574,549 to 576,651
_RS18820
Position (kb) 573
574
575 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.060 kb on + strand, within ABZR87_RS18805 at 572.061 kb on - strand, within ABZR87_RS18805 at 572.061 kb on - strand, within ABZR87_RS18805 at 572.066 kb on + strand, within ABZR87_RS18805 at 572.066 kb on + strand, within ABZR87_RS18805 at 572.066 kb on + strand, within ABZR87_RS18805 at 572.066 kb on + strand, within ABZR87_RS18805 at 572.067 kb on - strand, within ABZR87_RS18805 at 572.067 kb on - strand, within ABZR87_RS18805 at 572.067 kb on - strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.105 kb on + strand, within ABZR87_RS18805 at 572.106 kb on - strand, within ABZR87_RS18805 at 572.106 kb on - strand, within ABZR87_RS18805 at 572.106 kb on - strand, within ABZR87_RS18805 at 572.106 kb on - strand, within ABZR87_RS18805 at 572.106 kb on - strand, within ABZR87_RS18805 at 572.106 kb on - strand, within ABZR87_RS18805 at 572.107 kb on - strand, within ABZR87_RS18805 at 572.141 kb on - strand, within ABZR87_RS18805 at 572.141 kb on - strand, within ABZR87_RS18805 at 572.180 kb on + strand, within ABZR87_RS18805 at 572.180 kb on + strand, within ABZR87_RS18805 at 572.180 kb on + strand, within ABZR87_RS18805 at 572.226 kb on - strand, within ABZR87_RS18805 at 572.226 kb on - strand, within ABZR87_RS18805 at 572.228 kb on + strand, within ABZR87_RS18805 at 572.228 kb on + strand, within ABZR87_RS18805 at 572.228 kb on + strand, within ABZR87_RS18805 at 572.228 kb on + strand, within ABZR87_RS18805 at 572.229 kb on - strand, within ABZR87_RS18805 at 572.246 kb on + strand, within ABZR87_RS18805 at 572.360 kb on + strand at 572.360 kb on + strand at 572.361 kb on - strand at 572.361 kb on - strand at 572.361 kb on - strand at 572.420 kb on + strand at 572.421 kb on - strand at 572.421 kb on - strand at 572.438 kb on - strand at 572.488 kb on + strand, within ABZR87_RS18810 at 572.489 kb on - strand, within ABZR87_RS18810 at 572.489 kb on - strand, within ABZR87_RS18810 at 572.489 kb on - strand, within ABZR87_RS18810 at 572.523 kb on + strand, within ABZR87_RS18810 at 572.523 kb on + strand, within ABZR87_RS18810 at 572.523 kb on + strand, within ABZR87_RS18810 at 572.524 kb on - strand, within ABZR87_RS18810 at 572.524 kb on - strand, within ABZR87_RS18810 at 572.647 kb on + strand, within ABZR87_RS18810 at 572.647 kb on + strand, within ABZR87_RS18810 at 572.648 kb on - strand, within ABZR87_RS18810 at 572.648 kb on - strand, within ABZR87_RS18810 at 572.648 kb on - strand, within ABZR87_RS18810 at 572.725 kb on + strand, within ABZR87_RS18810 at 572.726 kb on - strand, within ABZR87_RS18810 at 572.726 kb on - strand, within ABZR87_RS18810 at 572.795 kb on - strand, within ABZR87_RS18810 at 572.901 kb on + strand at 572.901 kb on + strand at 572.908 kb on - strand at 572.964 kb on + strand at 572.964 kb on + strand at 572.964 kb on + strand at 572.974 kb on + strand at 572.974 kb on + strand at 572.974 kb on + strand at 572.974 kb on + strand at 572.988 kb on - strand at 573.015 kb on + strand at 573.016 kb on - strand at 573.158 kb on - strand at 573.158 kb on - strand at 573.451 kb on + strand, within ABZR87_RS18815 at 573.451 kb on + strand, within ABZR87_RS18815 at 573.451 kb on + strand, within ABZR87_RS18815 at 573.452 kb on - strand, within ABZR87_RS18815 at 573.452 kb on - strand, within ABZR87_RS18815 at 573.452 kb on - strand, within ABZR87_RS18815 at 573.452 kb on - strand, within ABZR87_RS18815 at 573.452 kb on - strand, within ABZR87_RS18815 at 573.516 kb on + strand, within ABZR87_RS18815 at 573.517 kb on - strand, within ABZR87_RS18815 at 573.722 kb on - strand, within ABZR87_RS18815 at 573.898 kb on + strand, within ABZR87_RS18815 at 573.899 kb on - strand, within ABZR87_RS18815 at 573.899 kb on - strand, within ABZR87_RS18815 at 573.937 kb on + strand, within ABZR87_RS18815 at 573.937 kb on + strand, within ABZR87_RS18815 at 573.937 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.066 kb on + strand, within ABZR87_RS18815 at 574.067 kb on - strand, within ABZR87_RS18815 at 574.067 kb on - strand, within ABZR87_RS18815 at 574.067 kb on - strand, within ABZR87_RS18815 at 574.067 kb on - strand, within ABZR87_RS18815 at 574.067 kb on - strand, within ABZR87_RS18815 at 574.122 kb on + strand, within ABZR87_RS18815 at 574.123 kb on - strand, within ABZR87_RS18815 at 574.354 kb on + strand at 574.355 kb on - strand at 574.355 kb on - strand at 574.438 kb on + strand at 574.439 kb on - strand at 574.547 kb on + strand at 574.547 kb on + strand at 574.548 kb on - strand at 574.548 kb on - strand at 574.559 kb on + strand at 574.560 kb on - strand at 574.560 kb on - strand at 574.967 kb on + strand, within ABZR87_RS18820 at 574.967 kb on + strand, within ABZR87_RS18820 at 574.967 kb on + strand, within ABZR87_RS18820 at 574.967 kb on + strand, within ABZR87_RS18820 at 574.967 kb on + strand, within ABZR87_RS18820 at 574.968 kb on - strand, within ABZR87_RS18820 at 574.968 kb on - strand, within ABZR87_RS18820 at 575.003 kb on + strand, within ABZR87_RS18820 at 575.003 kb on + strand, within ABZR87_RS18820 at 575.003 kb on + strand, within ABZR87_RS18820 at 575.003 kb on + strand, within ABZR87_RS18820 at 575.004 kb on - strand, within ABZR87_RS18820 at 575.004 kb on - strand, within ABZR87_RS18820 at 575.004 kb on - strand, within ABZR87_RS18820 at 575.018 kb on + strand, within ABZR87_RS18820 at 575.019 kb on - strand, within ABZR87_RS18820
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 572,060 + ABZR87_RS18805 0.62 -0.4 572,060 + ABZR87_RS18805 0.62 -1.1 572,060 + ABZR87_RS18805 0.62 +1.2 572,060 + ABZR87_RS18805 0.62 +1.2 572,060 + ABZR87_RS18805 0.62 +0.6 572,060 + ABZR87_RS18805 0.62 -0.6 572,060 + ABZR87_RS18805 0.62 -2.5 572,060 + ABZR87_RS18805 0.62 +0.0 572,061 - ABZR87_RS18805 0.62 -0.0 572,061 - ABZR87_RS18805 0.62 -1.0 572,066 + ABZR87_RS18805 0.63 -3.8 572,066 + ABZR87_RS18805 0.63 -1.2 572,066 + ABZR87_RS18805 0.63 -3.6 572,066 + ABZR87_RS18805 0.63 -0.4 572,067 - ABZR87_RS18805 0.63 +0.0 572,067 - ABZR87_RS18805 0.63 +0.6 572,067 - ABZR87_RS18805 0.63 +1.0 572,105 + ABZR87_RS18805 0.67 -2.0 572,105 + ABZR87_RS18805 0.67 -1.9 572,105 + ABZR87_RS18805 0.67 +1.0 572,105 + ABZR87_RS18805 0.67 +0.5 572,105 + ABZR87_RS18805 0.67 -3.0 572,105 + ABZR87_RS18805 0.67 +0.0 572,105 + ABZR87_RS18805 0.67 +0.5 572,105 + ABZR87_RS18805 0.67 +0.4 572,105 + ABZR87_RS18805 0.67 -2.1 572,106 - ABZR87_RS18805 0.67 -1.7 572,106 - ABZR87_RS18805 0.67 -0.5 572,106 - ABZR87_RS18805 0.67 -3.5 572,106 - ABZR87_RS18805 0.67 +1.1 572,106 - ABZR87_RS18805 0.67 -1.3 572,106 - ABZR87_RS18805 0.67 -3.6 572,107 - ABZR87_RS18805 0.67 +1.1 572,141 - ABZR87_RS18805 0.71 -3.0 572,141 - ABZR87_RS18805 0.71 -2.0 572,180 + ABZR87_RS18805 0.75 -1.3 572,180 + ABZR87_RS18805 0.75 -0.9 572,180 + ABZR87_RS18805 0.75 -0.5 572,226 - ABZR87_RS18805 0.80 -3.0 572,226 - ABZR87_RS18805 0.80 +2.0 572,228 + ABZR87_RS18805 0.80 +0.8 572,228 + ABZR87_RS18805 0.80 -3.1 572,228 + ABZR87_RS18805 0.80 +0.4 572,228 + ABZR87_RS18805 0.80 +1.1 572,229 - ABZR87_RS18805 0.80 -1.0 572,246 + ABZR87_RS18805 0.82 -1.6 572,360 + +1.8 572,360 + -0.4 572,361 - +1.0 572,361 - -1.4 572,361 - -3.8 572,420 + -3.9 572,421 - -0.0 572,421 - -1.4 572,438 - -0.2 572,488 + ABZR87_RS18810 0.15 +1.5 572,489 - ABZR87_RS18810 0.15 -0.8 572,489 - ABZR87_RS18810 0.15 -1.3 572,489 - ABZR87_RS18810 0.15 +0.7 572,523 + ABZR87_RS18810 0.23 +0.5 572,523 + ABZR87_RS18810 0.23 +2.2 572,523 + ABZR87_RS18810 0.23 -1.7 572,524 - ABZR87_RS18810 0.23 +1.0 572,524 - ABZR87_RS18810 0.23 +0.1 572,647 + ABZR87_RS18810 0.52 -3.4 572,647 + ABZR87_RS18810 0.52 -2.7 572,648 - ABZR87_RS18810 0.52 -4.1 572,648 - ABZR87_RS18810 0.52 +0.4 572,648 - ABZR87_RS18810 0.52 -3.5 572,725 + ABZR87_RS18810 0.70 -3.1 572,726 - ABZR87_RS18810 0.70 -0.1 572,726 - ABZR87_RS18810 0.70 -0.5 572,795 - ABZR87_RS18810 0.86 -1.2 572,901 + +0.6 572,901 + -3.2 572,908 - +0.4 572,964 + +0.0 572,964 + +1.0 572,964 + +1.0 572,974 + +0.0 572,974 + +0.2 572,974 + -0.5 572,974 + -0.1 572,988 - -1.1 573,015 + +0.6 573,016 - +1.4 573,158 - -3.7 573,158 - +0.8 573,451 + ABZR87_RS18815 0.29 -0.7 573,451 + ABZR87_RS18815 0.29 -3.2 573,451 + ABZR87_RS18815 0.29 +1.0 573,452 - ABZR87_RS18815 0.29 +2.8 573,452 - ABZR87_RS18815 0.29 +0.7 573,452 - ABZR87_RS18815 0.29 +1.2 573,452 - ABZR87_RS18815 0.29 -2.6 573,452 - ABZR87_RS18815 0.29 +1.1 573,516 + ABZR87_RS18815 0.33 -1.1 573,517 - ABZR87_RS18815 0.33 -0.7 573,722 - ABZR87_RS18815 0.48 -2.0 573,898 + ABZR87_RS18815 0.60 +2.2 573,899 - ABZR87_RS18815 0.60 -1.2 573,899 - ABZR87_RS18815 0.60 +0.5 573,937 + ABZR87_RS18815 0.63 -0.2 573,937 + ABZR87_RS18815 0.63 +0.2 573,937 + ABZR87_RS18815 0.63 -3.7 574,066 + ABZR87_RS18815 0.72 -3.4 574,066 + ABZR87_RS18815 0.72 -0.3 574,066 + ABZR87_RS18815 0.72 -1.1 574,066 + ABZR87_RS18815 0.72 -1.0 574,066 + ABZR87_RS18815 0.72 -3.5 574,066 + ABZR87_RS18815 0.72 -0.9 574,066 + ABZR87_RS18815 0.72 +0.9 574,067 - ABZR87_RS18815 0.72 -0.4 574,067 - ABZR87_RS18815 0.72 -1.3 574,067 - ABZR87_RS18815 0.72 -0.7 574,067 - ABZR87_RS18815 0.72 -0.8 574,067 - ABZR87_RS18815 0.72 -1.0 574,122 + ABZR87_RS18815 0.76 +0.8 574,123 - ABZR87_RS18815 0.76 +1.8 574,354 + -0.9 574,355 - +1.6 574,355 - +1.3 574,438 + -1.0 574,439 - -0.5 574,547 + -0.4 574,547 + -1.1 574,548 - +1.1 574,548 - -1.8 574,559 + +0.5 574,560 - -0.4 574,560 - -0.5 574,967 + ABZR87_RS18820 0.20 +0.3 574,967 + ABZR87_RS18820 0.20 -2.6 574,967 + ABZR87_RS18820 0.20 -2.9 574,967 + ABZR87_RS18820 0.20 -0.0 574,967 + ABZR87_RS18820 0.20 +1.2 574,968 - ABZR87_RS18820 0.20 -0.6 574,968 - ABZR87_RS18820 0.20 -0.2 575,003 + ABZR87_RS18820 0.22 -2.5 575,003 + ABZR87_RS18820 0.22 -0.5 575,003 + ABZR87_RS18820 0.22 +2.5 575,003 + ABZR87_RS18820 0.22 -0.7 575,004 - ABZR87_RS18820 0.22 -0.7 575,004 - ABZR87_RS18820 0.22 -2.8 575,004 - ABZR87_RS18820 0.22 +0.6 575,018 + ABZR87_RS18820 0.22 -0.5 575,019 - ABZR87_RS18820 0.22 -0.3
Or see this region's nucleotide sequence