Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18765 and ABZR87_RS18770 are separated by 94 nucleotides ABZR87_RS18770 and ABZR87_RS18775 are separated by 16 nucleotides ABZR87_RS18775 and ABZR87_RS18780 are separated by 457 nucleotides ABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotides
ABZR87_RS18765: ABZR87_RS18765 - S53 family peptidase, at 562,917 to 564,281
_RS18765
ABZR87_RS18770: ABZR87_RS18770 - S10 family peptidase, at 564,376 to 566,109
_RS18770
ABZR87_RS18775: ABZR87_RS18775 - hypothetical protein, at 566,126 to 566,257
_RS18775
ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861
_RS18780
ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632
_RS18785
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 563.484 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.512 kb on - strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.772 kb on - strand, within ABZR87_RS18765 at 564.145 kb on + strand at 564.226 kb on + strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.387 kb on + strand at 564.387 kb on + strand at 564.387 kb on + strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.513 kb on + strand at 564.514 kb on - strand at 564.514 kb on - strand at 564.661 kb on + strand, within ABZR87_RS18770 at 564.662 kb on - strand, within ABZR87_RS18770 at 564.793 kb on + strand, within ABZR87_RS18770 at 564.793 kb on + strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.795 kb on + strand, within ABZR87_RS18770 at 564.970 kb on + strand, within ABZR87_RS18770 at 564.970 kb on + strand, within ABZR87_RS18770 at 565.111 kb on + strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.204 kb on + strand, within ABZR87_RS18770 at 565.337 kb on + strand, within ABZR87_RS18770 at 565.338 kb on - strand, within ABZR87_RS18770 at 565.355 kb on - strand, within ABZR87_RS18770 at 565.418 kb on - strand, within ABZR87_RS18770 at 565.540 kb on + strand, within ABZR87_RS18770 at 565.540 kb on + strand, within ABZR87_RS18770 at 565.541 kb on - strand, within ABZR87_RS18770 at 565.639 kb on + strand, within ABZR87_RS18770 at 565.660 kb on + strand, within ABZR87_RS18770 at 565.660 kb on + strand, within ABZR87_RS18770 at 565.661 kb on - strand, within ABZR87_RS18770 at 565.661 kb on - strand, within ABZR87_RS18770 at 565.661 kb on - strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.871 kb on - strand, within ABZR87_RS18770 at 565.873 kb on + strand, within ABZR87_RS18770 at 565.873 kb on + strand, within ABZR87_RS18770 at 565.874 kb on - strand, within ABZR87_RS18770 at 565.894 kb on + strand, within ABZR87_RS18770 at 565.895 kb on - strand, within ABZR87_RS18770 at 565.969 kb on + strand at 565.969 kb on + strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.991 kb on - strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.042 kb on - strand at 566.042 kb on - strand at 566.139 kb on + strand at 566.142 kb on + strand, within ABZR87_RS18775 at 566.142 kb on + strand, within ABZR87_RS18775 at 566.142 kb on + strand, within ABZR87_RS18775 at 566.143 kb on - strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.154 kb on + strand, within ABZR87_RS18775 at 566.154 kb on + strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.173 kb on - strand, within ABZR87_RS18775 at 566.302 kb on + strand at 566.303 kb on - strand at 566.328 kb on + strand at 566.329 kb on - strand at 566.337 kb on + strand at 566.337 kb on + strand at 566.338 kb on - strand at 566.338 kb on - strand at 566.338 kb on - strand at 566.412 kb on + strand at 566.423 kb on + strand at 566.424 kb on - strand at 566.501 kb on + strand at 566.501 kb on + strand at 566.502 kb on - strand at 566.502 kb on - strand at 566.512 kb on + strand at 566.512 kb on + strand at 566.512 kb on + strand at 566.513 kb on - strand at 566.513 kb on - strand at 566.542 kb on + strand at 566.542 kb on + strand at 566.542 kb on + strand at 566.599 kb on + strand at 566.599 kb on + strand at 566.599 kb on + strand at 566.600 kb on - strand at 566.600 kb on - strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.604 kb on - strand at 566.604 kb on - strand at 566.604 kb on - strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.699 kb on - strand at 566.699 kb on - strand at 566.699 kb on - strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.860 kb on - strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.108 kb on + strand, within ABZR87_RS18785 at 567.108 kb on + strand, within ABZR87_RS18785 at 567.109 kb on - strand, within ABZR87_RS18785
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 563,484 + ABZR87_RS18765 0.42 -0.8 563,511 + ABZR87_RS18765 0.44 -1.7 563,511 + ABZR87_RS18765 0.44 +0.6 563,512 - ABZR87_RS18765 0.44 -3.6 563,598 + ABZR87_RS18765 0.50 -3.6 563,598 + ABZR87_RS18765 0.50 -4.2 563,598 + ABZR87_RS18765 0.50 -2.0 563,599 - ABZR87_RS18765 0.50 -2.0 563,599 - ABZR87_RS18765 0.50 -2.6 563,757 + ABZR87_RS18765 0.62 -0.8 563,757 + ABZR87_RS18765 0.62 -0.9 563,757 + ABZR87_RS18765 0.62 -2.8 563,758 - ABZR87_RS18765 0.62 -1.7 563,758 - ABZR87_RS18765 0.62 -2.9 563,772 - ABZR87_RS18765 0.63 -1.1 564,145 + +1.4 564,226 + +1.1 564,227 - +0.7 564,227 - -0.6 564,387 + -2.4 564,387 + +1.7 564,387 + -4.1 564,388 - +0.2 564,388 - -0.1 564,388 - -1.9 564,388 - -3.5 564,388 - -0.1 564,388 - -0.2 564,513 + +0.9 564,514 - -0.4 564,514 - +1.2 564,661 + ABZR87_RS18770 0.16 +1.0 564,662 - ABZR87_RS18770 0.16 +0.6 564,793 + ABZR87_RS18770 0.24 -2.1 564,793 + ABZR87_RS18770 0.24 +0.5 564,794 - ABZR87_RS18770 0.24 +0.4 564,794 - ABZR87_RS18770 0.24 +2.3 564,794 - ABZR87_RS18770 0.24 -0.5 564,794 - ABZR87_RS18770 0.24 +0.4 564,795 + ABZR87_RS18770 0.24 -1.7 564,970 + ABZR87_RS18770 0.34 +1.5 564,970 + ABZR87_RS18770 0.34 +0.0 565,111 + ABZR87_RS18770 0.42 -1.0 565,112 - ABZR87_RS18770 0.42 -0.2 565,112 - ABZR87_RS18770 0.42 +1.5 565,112 - ABZR87_RS18770 0.42 -3.5 565,141 + ABZR87_RS18770 0.44 +0.6 565,141 + ABZR87_RS18770 0.44 +0.0 565,141 + ABZR87_RS18770 0.44 +2.4 565,141 + ABZR87_RS18770 0.44 -1.5 565,141 + ABZR87_RS18770 0.44 -0.2 565,142 - ABZR87_RS18770 0.44 -0.6 565,142 - ABZR87_RS18770 0.44 -1.7 565,142 - ABZR87_RS18770 0.44 +0.1 565,142 - ABZR87_RS18770 0.44 -1.4 565,142 - ABZR87_RS18770 0.44 +1.6 565,204 + ABZR87_RS18770 0.48 +1.9 565,337 + ABZR87_RS18770 0.55 +0.3 565,338 - ABZR87_RS18770 0.55 +0.2 565,355 - ABZR87_RS18770 0.56 +0.2 565,418 - ABZR87_RS18770 0.60 +1.5 565,540 + ABZR87_RS18770 0.67 -0.4 565,540 + ABZR87_RS18770 0.67 -1.5 565,541 - ABZR87_RS18770 0.67 -1.1 565,639 + ABZR87_RS18770 0.73 -3.6 565,660 + ABZR87_RS18770 0.74 -1.8 565,660 + ABZR87_RS18770 0.74 +0.3 565,661 - ABZR87_RS18770 0.74 -0.2 565,661 - ABZR87_RS18770 0.74 +0.3 565,661 - ABZR87_RS18770 0.74 +0.9 565,801 + ABZR87_RS18770 0.82 -0.5 565,801 + ABZR87_RS18770 0.82 +2.4 565,801 + ABZR87_RS18770 0.82 -0.1 565,801 + ABZR87_RS18770 0.82 -2.8 565,801 + ABZR87_RS18770 0.82 -0.1 565,802 - ABZR87_RS18770 0.82 +1.4 565,802 - ABZR87_RS18770 0.82 -0.1 565,802 - ABZR87_RS18770 0.82 +0.5 565,802 - ABZR87_RS18770 0.82 -1.0 565,871 - ABZR87_RS18770 0.86 -2.3 565,873 + ABZR87_RS18770 0.86 -2.1 565,873 + ABZR87_RS18770 0.86 +1.5 565,874 - ABZR87_RS18770 0.86 +0.8 565,894 + ABZR87_RS18770 0.88 +0.6 565,895 - ABZR87_RS18770 0.88 +0.4 565,969 + -0.5 565,969 + +0.1 565,970 - -0.9 565,970 - +0.8 565,970 - -2.9 565,970 - -1.9 565,990 + -4.3 565,990 + -2.7 565,990 + +0.0 565,990 + -2.6 565,990 + +1.6 565,990 + -3.5 565,991 - +1.4 566,041 + +0.3 566,041 + +0.9 566,041 + -2.5 566,041 + -1.8 566,041 + +0.7 566,041 + -2.7 566,042 - -0.7 566,042 - -1.6 566,139 + -2.8 566,142 + ABZR87_RS18775 0.12 +0.1 566,142 + ABZR87_RS18775 0.12 -1.8 566,142 + ABZR87_RS18775 0.12 -0.3 566,143 - ABZR87_RS18775 0.13 -0.3 566,151 + ABZR87_RS18775 0.19 -0.4 566,151 + ABZR87_RS18775 0.19 -3.1 566,151 + ABZR87_RS18775 0.19 +0.3 566,151 + ABZR87_RS18775 0.19 -2.3 566,152 - ABZR87_RS18775 0.20 -3.2 566,152 - ABZR87_RS18775 0.20 -0.3 566,152 - ABZR87_RS18775 0.20 +1.5 566,152 - ABZR87_RS18775 0.20 -0.7 566,152 - ABZR87_RS18775 0.20 +0.4 566,154 + ABZR87_RS18775 0.21 -0.2 566,154 + ABZR87_RS18775 0.21 -3.5 566,155 - ABZR87_RS18775 0.22 -3.3 566,155 - ABZR87_RS18775 0.22 -0.3 566,155 - ABZR87_RS18775 0.22 -3.4 566,169 + ABZR87_RS18775 0.33 -2.1 566,169 + ABZR87_RS18775 0.33 -2.5 566,169 + ABZR87_RS18775 0.33 +0.9 566,170 - ABZR87_RS18775 0.33 +0.3 566,170 - ABZR87_RS18775 0.33 -3.7 566,170 - ABZR87_RS18775 0.33 +0.0 566,173 - ABZR87_RS18775 0.36 +1.3 566,302 + -0.2 566,303 - +0.4 566,328 + +1.6 566,329 - -0.2 566,337 + +0.6 566,337 + -3.8 566,338 - -3.4 566,338 - -0.7 566,338 - +0.4 566,412 + +0.5 566,423 + +0.2 566,424 - +1.2 566,501 + -1.0 566,501 + -2.7 566,502 - +0.9 566,502 - -3.4 566,512 + -0.4 566,512 + -0.3 566,512 + +0.6 566,513 - -1.7 566,513 - +0.4 566,542 + -2.2 566,542 + +0.2 566,542 + +0.7 566,599 + -2.5 566,599 + -2.1 566,599 + -0.7 566,600 - -1.3 566,600 - -3.0 566,601 + +0.7 566,601 + -0.1 566,601 + -0.1 566,601 + -0.4 566,602 - +1.6 566,602 - +2.7 566,602 - -2.7 566,602 - -0.2 566,602 - -0.3 566,602 - -0.8 566,603 + -3.3 566,603 + -3.5 566,603 + -0.4 566,603 + -1.0 566,603 + +2.1 566,603 + -1.8 566,603 + -0.0 566,604 - +0.8 566,604 - -2.6 566,604 - -1.5 566,698 + -3.4 566,698 + -2.6 566,699 - +0.5 566,699 - +0.1 566,699 - -2.4 566,859 + +1.7 566,859 + +0.5 566,859 + -2.1 566,860 - -1.8 567,027 + -0.2 567,027 + -1.6 567,027 + -1.4 567,027 + +0.8 567,027 + -3.1 567,027 + -1.1 567,028 - +0.1 567,028 - -4.3 567,028 - +0.5 567,108 + ABZR87_RS18785 0.16 +0.2 567,108 + ABZR87_RS18785 0.16 +0.9 567,109 - ABZR87_RS18785 0.16 -2.2
Or see this region's nucleotide sequence