Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18740 and ABZR87_RS18745 are separated by 143 nucleotides ABZR87_RS18745 and ABZR87_RS18750 are separated by 161 nucleotides ABZR87_RS18750 and ABZR87_RS18755 are separated by 101 nucleotides
ABZR87_RS18740: ABZR87_RS18740 - LysR substrate-binding domain-containing protein, at 556,986 to 557,870
_RS18740
ABZR87_RS18745: ABZR87_RS18745 - hypothetical protein, at 558,014 to 558,535
_RS18745
ABZR87_RS18750: ABZR87_RS18750 - AMP-binding protein, at 558,697 to 560,394
_RS18750
ABZR87_RS18755: ABZR87_RS18755 - DUF1488 family protein, at 560,496 to 560,837
_RS18755
Position (kb) 558
559
560
561 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 557.939 kb on - strand at 557.939 kb on - strand at 558.086 kb on + strand, within ABZR87_RS18745 at 558.218 kb on + strand, within ABZR87_RS18745 at 558.218 kb on + strand, within ABZR87_RS18745 at 558.218 kb on + strand, within ABZR87_RS18745 at 558.218 kb on + strand, within ABZR87_RS18745 at 558.218 kb on + strand, within ABZR87_RS18745 at 558.218 kb on + strand, within ABZR87_RS18745 at 558.219 kb on - strand, within ABZR87_RS18745 at 558.219 kb on - strand, within ABZR87_RS18745 at 558.219 kb on - strand, within ABZR87_RS18745 at 558.219 kb on - strand, within ABZR87_RS18745 at 558.219 kb on - strand, within ABZR87_RS18745 at 558.219 kb on - strand, within ABZR87_RS18745 at 558.220 kb on + strand, within ABZR87_RS18745 at 558.220 kb on + strand, within ABZR87_RS18745 at 558.220 kb on + strand, within ABZR87_RS18745 at 558.220 kb on + strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.221 kb on - strand, within ABZR87_RS18745 at 558.233 kb on + strand, within ABZR87_RS18745 at 558.367 kb on - strand, within ABZR87_RS18745 at 558.387 kb on + strand, within ABZR87_RS18745 at 558.388 kb on - strand, within ABZR87_RS18745 at 558.388 kb on - strand, within ABZR87_RS18745 at 558.388 kb on - strand, within ABZR87_RS18745 at 558.388 kb on - strand, within ABZR87_RS18745 at 558.584 kb on + strand at 558.584 kb on + strand at 558.585 kb on - strand at 558.585 kb on - strand at 558.585 kb on - strand at 558.586 kb on + strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.587 kb on - strand at 558.633 kb on + strand at 558.757 kb on + strand at 559.235 kb on - strand, within ABZR87_RS18750 at 559.235 kb on - strand, within ABZR87_RS18750 at 559.235 kb on - strand, within ABZR87_RS18750 at 559.298 kb on - strand, within ABZR87_RS18750 at 559.298 kb on - strand, within ABZR87_RS18750 at 559.298 kb on - strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.341 kb on + strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.342 kb on - strand, within ABZR87_RS18750 at 559.381 kb on + strand, within ABZR87_RS18750 at 559.381 kb on + strand, within ABZR87_RS18750 at 559.382 kb on - strand, within ABZR87_RS18750 at 559.419 kb on + strand, within ABZR87_RS18750 at 559.419 kb on + strand, within ABZR87_RS18750 at 559.419 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.498 kb on + strand, within ABZR87_RS18750 at 559.504 kb on + strand, within ABZR87_RS18750 at 559.504 kb on + strand, within ABZR87_RS18750 at 559.505 kb on - strand, within ABZR87_RS18750 at 559.505 kb on - strand, within ABZR87_RS18750 at 559.505 kb on - strand, within ABZR87_RS18750 at 559.584 kb on - strand, within ABZR87_RS18750 at 559.720 kb on + strand, within ABZR87_RS18750 at 559.721 kb on - strand, within ABZR87_RS18750 at 559.903 kb on + strand, within ABZR87_RS18750 at 559.904 kb on - strand, within ABZR87_RS18750 at 559.951 kb on + strand, within ABZR87_RS18750 at 559.952 kb on - strand, within ABZR87_RS18750 at 559.952 kb on - strand, within ABZR87_RS18750 at 559.991 kb on - strand, within ABZR87_RS18750 at 559.999 kb on + strand, within ABZR87_RS18750 at 559.999 kb on + strand, within ABZR87_RS18750 at 559.999 kb on + strand, within ABZR87_RS18750 at 559.999 kb on + strand, within ABZR87_RS18750 at 559.999 kb on + strand, within ABZR87_RS18750 at 560.000 kb on - strand, within ABZR87_RS18750 at 560.000 kb on - strand, within ABZR87_RS18750 at 560.000 kb on - strand, within ABZR87_RS18750 at 560.000 kb on - strand, within ABZR87_RS18750 at 560.000 kb on - strand, within ABZR87_RS18750 at 560.000 kb on - strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.021 kb on + strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.022 kb on - strand, within ABZR87_RS18750 at 560.039 kb on - strand, within ABZR87_RS18750 at 560.233 kb on + strand at 560.233 kb on + strand at 560.233 kb on + strand at 560.233 kb on + strand at 560.234 kb on - strand at 560.234 kb on - strand at 560.234 kb on - strand at 560.234 kb on - strand at 560.234 kb on - strand at 560.234 kb on - strand at 560.348 kb on + strand at 560.349 kb on - strand at 560.365 kb on + strand at 560.365 kb on + strand at 560.365 kb on + strand at 560.365 kb on + strand at 560.366 kb on - strand at 560.366 kb on - strand at 560.548 kb on + strand, within ABZR87_RS18755 at 560.607 kb on + strand, within ABZR87_RS18755 at 560.607 kb on + strand, within ABZR87_RS18755 at 560.607 kb on + strand, within ABZR87_RS18755 at 560.607 kb on + strand, within ABZR87_RS18755 at 560.607 kb on + strand, within ABZR87_RS18755 at 560.608 kb on - strand, within ABZR87_RS18755 at 560.608 kb on - strand, within ABZR87_RS18755 at 560.608 kb on - strand, within ABZR87_RS18755 at 560.608 kb on - strand, within ABZR87_RS18755 at 560.608 kb on - strand, within ABZR87_RS18755 at 560.683 kb on + strand, within ABZR87_RS18755 at 560.683 kb on + strand, within ABZR87_RS18755 at 560.684 kb on - strand, within ABZR87_RS18755 at 560.903 kb on + strand at 560.990 kb on - strand at 560.990 kb on - strand at 561.005 kb on - strand at 561.020 kb on + strand at 561.021 kb on - strand at 561.081 kb on + strand at 561.081 kb on + strand at 561.082 kb on - strand at 561.094 kb on + strand at 561.094 kb on + strand at 561.094 kb on + strand at 561.095 kb on - strand at 561.095 kb on - strand at 561.095 kb on - strand at 561.102 kb on + strand at 561.103 kb on - strand at 561.103 kb on - strand at 561.103 kb on - strand at 561.103 kb on - strand at 561.108 kb on + strand at 561.108 kb on + strand at 561.137 kb on + strand at 561.137 kb on + strand at 561.138 kb on - strand at 561.138 kb on - strand at 561.138 kb on - strand at 561.138 kb on - strand at 561.175 kb on + strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.336 kb on + strand at 561.377 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 557,939 - -2.6 557,939 - -3.2 558,086 + ABZR87_RS18745 0.14 -1.4 558,218 + ABZR87_RS18745 0.39 -2.8 558,218 + ABZR87_RS18745 0.39 -1.1 558,218 + ABZR87_RS18745 0.39 -2.2 558,218 + ABZR87_RS18745 0.39 -3.6 558,218 + ABZR87_RS18745 0.39 -0.9 558,218 + ABZR87_RS18745 0.39 +0.2 558,219 - ABZR87_RS18745 0.39 +1.1 558,219 - ABZR87_RS18745 0.39 -0.3 558,219 - ABZR87_RS18745 0.39 -0.4 558,219 - ABZR87_RS18745 0.39 -0.4 558,219 - ABZR87_RS18745 0.39 -0.5 558,219 - ABZR87_RS18745 0.39 -0.0 558,220 + ABZR87_RS18745 0.39 +2.2 558,220 + ABZR87_RS18745 0.39 -2.7 558,220 + ABZR87_RS18745 0.39 +0.0 558,220 + ABZR87_RS18745 0.39 -1.4 558,221 - ABZR87_RS18745 0.40 +1.4 558,221 - ABZR87_RS18745 0.40 -0.2 558,221 - ABZR87_RS18745 0.40 +0.2 558,221 - ABZR87_RS18745 0.40 -1.1 558,221 - ABZR87_RS18745 0.40 -4.0 558,221 - ABZR87_RS18745 0.40 -2.2 558,221 - ABZR87_RS18745 0.40 +0.6 558,221 - ABZR87_RS18745 0.40 -1.2 558,233 + ABZR87_RS18745 0.42 +0.3 558,367 - ABZR87_RS18745 0.68 -1.0 558,387 + ABZR87_RS18745 0.71 -0.7 558,388 - ABZR87_RS18745 0.72 +0.6 558,388 - ABZR87_RS18745 0.72 +0.1 558,388 - ABZR87_RS18745 0.72 -3.4 558,388 - ABZR87_RS18745 0.72 +1.2 558,584 + -0.9 558,584 + +1.1 558,585 - -0.2 558,585 - -0.4 558,585 - +2.0 558,586 + -2.6 558,587 - +0.3 558,587 - -0.1 558,587 - -1.1 558,587 - +1.0 558,587 - +0.2 558,587 - +0.1 558,587 - -0.0 558,587 - -0.9 558,633 + +0.1 558,757 + -0.3 559,235 - ABZR87_RS18750 0.32 +1.0 559,235 - ABZR87_RS18750 0.32 +0.6 559,235 - ABZR87_RS18750 0.32 -0.9 559,298 - ABZR87_RS18750 0.35 -1.3 559,298 - ABZR87_RS18750 0.35 +0.7 559,298 - ABZR87_RS18750 0.35 +0.8 559,341 + ABZR87_RS18750 0.38 +0.2 559,341 + ABZR87_RS18750 0.38 -1.5 559,341 + ABZR87_RS18750 0.38 -2.1 559,341 + ABZR87_RS18750 0.38 +0.4 559,341 + ABZR87_RS18750 0.38 -0.2 559,341 + ABZR87_RS18750 0.38 +0.6 559,341 + ABZR87_RS18750 0.38 -0.8 559,341 + ABZR87_RS18750 0.38 +1.7 559,342 - ABZR87_RS18750 0.38 +1.1 559,342 - ABZR87_RS18750 0.38 +0.5 559,342 - ABZR87_RS18750 0.38 -0.6 559,342 - ABZR87_RS18750 0.38 +1.0 559,342 - ABZR87_RS18750 0.38 -1.0 559,342 - ABZR87_RS18750 0.38 -1.1 559,342 - ABZR87_RS18750 0.38 +0.4 559,381 + ABZR87_RS18750 0.40 -1.9 559,381 + ABZR87_RS18750 0.40 +0.3 559,382 - ABZR87_RS18750 0.40 -0.6 559,419 + ABZR87_RS18750 0.43 +2.1 559,419 + ABZR87_RS18750 0.43 -0.5 559,419 + ABZR87_RS18750 0.43 -1.5 559,498 + ABZR87_RS18750 0.47 -2.5 559,498 + ABZR87_RS18750 0.47 -3.6 559,498 + ABZR87_RS18750 0.47 +0.1 559,498 + ABZR87_RS18750 0.47 +0.5 559,498 + ABZR87_RS18750 0.47 -1.3 559,498 + ABZR87_RS18750 0.47 -0.3 559,498 + ABZR87_RS18750 0.47 -3.6 559,504 + ABZR87_RS18750 0.48 -1.7 559,504 + ABZR87_RS18750 0.48 +2.3 559,505 - ABZR87_RS18750 0.48 +1.0 559,505 - ABZR87_RS18750 0.48 +0.9 559,505 - ABZR87_RS18750 0.48 +0.8 559,584 - ABZR87_RS18750 0.52 +0.7 559,720 + ABZR87_RS18750 0.60 -3.0 559,721 - ABZR87_RS18750 0.60 -3.2 559,903 + ABZR87_RS18750 0.71 +1.7 559,904 - ABZR87_RS18750 0.71 -3.7 559,951 + ABZR87_RS18750 0.74 +0.3 559,952 - ABZR87_RS18750 0.74 +0.5 559,952 - ABZR87_RS18750 0.74 +0.6 559,991 - ABZR87_RS18750 0.76 +1.6 559,999 + ABZR87_RS18750 0.77 -1.2 559,999 + ABZR87_RS18750 0.77 +0.9 559,999 + ABZR87_RS18750 0.77 +1.8 559,999 + ABZR87_RS18750 0.77 -0.5 559,999 + ABZR87_RS18750 0.77 -0.0 560,000 - ABZR87_RS18750 0.77 -1.2 560,000 - ABZR87_RS18750 0.77 +0.2 560,000 - ABZR87_RS18750 0.77 -0.0 560,000 - ABZR87_RS18750 0.77 +0.3 560,000 - ABZR87_RS18750 0.77 +0.9 560,000 - ABZR87_RS18750 0.77 -0.3 560,021 + ABZR87_RS18750 0.78 -1.9 560,021 + ABZR87_RS18750 0.78 -3.1 560,021 + ABZR87_RS18750 0.78 +0.2 560,021 + ABZR87_RS18750 0.78 +1.6 560,021 + ABZR87_RS18750 0.78 +0.1 560,021 + ABZR87_RS18750 0.78 -4.0 560,021 + ABZR87_RS18750 0.78 -2.5 560,022 - ABZR87_RS18750 0.78 -2.2 560,022 - ABZR87_RS18750 0.78 +1.8 560,022 - ABZR87_RS18750 0.78 -0.6 560,022 - ABZR87_RS18750 0.78 -1.2 560,022 - ABZR87_RS18750 0.78 -0.2 560,022 - ABZR87_RS18750 0.78 -3.4 560,022 - ABZR87_RS18750 0.78 -1.0 560,022 - ABZR87_RS18750 0.78 -2.1 560,022 - ABZR87_RS18750 0.78 +0.8 560,039 - ABZR87_RS18750 0.79 -0.4 560,233 + -0.5 560,233 + +0.6 560,233 + -0.0 560,233 + +0.5 560,234 - +0.0 560,234 - -0.1 560,234 - -0.0 560,234 - +0.8 560,234 - -3.8 560,234 - +0.1 560,348 + +2.0 560,349 - -2.1 560,365 + +0.5 560,365 + +0.1 560,365 + -1.1 560,365 + -0.6 560,366 - +1.2 560,366 - -0.1 560,548 + ABZR87_RS18755 0.15 -0.4 560,607 + ABZR87_RS18755 0.32 +1.4 560,607 + ABZR87_RS18755 0.32 -0.0 560,607 + ABZR87_RS18755 0.32 +0.1 560,607 + ABZR87_RS18755 0.32 -1.5 560,607 + ABZR87_RS18755 0.32 -1.0 560,608 - ABZR87_RS18755 0.33 -0.1 560,608 - ABZR87_RS18755 0.33 +0.2 560,608 - ABZR87_RS18755 0.33 -0.5 560,608 - ABZR87_RS18755 0.33 +1.4 560,608 - ABZR87_RS18755 0.33 +0.9 560,683 + ABZR87_RS18755 0.55 -1.3 560,683 + ABZR87_RS18755 0.55 -0.1 560,684 - ABZR87_RS18755 0.55 +1.4 560,903 + +1.4 560,990 - +0.1 560,990 - -0.1 561,005 - +1.2 561,020 + -0.3 561,021 - +0.3 561,081 + -4.3 561,081 + -0.1 561,082 - -2.4 561,094 + -0.3 561,094 + +0.9 561,094 + +0.6 561,095 - +0.2 561,095 - +0.9 561,095 - -1.2 561,102 + -0.8 561,103 - -1.3 561,103 - +1.0 561,103 - +1.2 561,103 - +0.8 561,108 + +0.5 561,108 + +0.9 561,137 + +0.3 561,137 + -0.5 561,138 - -2.2 561,138 - +0.0 561,138 - +0.9 561,138 - -0.9 561,175 + -2.3 561,176 - +0.5 561,176 - -3.2 561,176 - +0.2 561,176 - -3.0 561,176 - +0.1 561,336 + -0.6 561,377 + -4.0 561,387 + +0.2 561,387 + -0.0 561,387 + +0.4 561,387 + -0.4 561,387 + -0.6 561,387 + +0.2 561,387 + -2.5 561,387 + -1.2 561,388 - -2.7 561,388 - +0.2 561,388 - -2.2 561,388 - -2.1 561,388 - +2.6 561,388 - -2.4 561,388 - -0.3 561,388 - +0.6 561,388 - +0.1 561,388 - +1.0 561,388 - -2.2 561,388 - -2.9
Or see this region's nucleotide sequence