Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18665 and ABZR87_RS18670 are separated by 33 nucleotides ABZR87_RS18670 and ABZR87_RS18675 are separated by 34 nucleotides ABZR87_RS18675 and ABZR87_RS18680 overlap by 4 nucleotides
ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944
_RS18665
ABZR87_RS18670: ABZR87_RS18670 - ABC transporter ATP-binding protein, at 541,978 to 543,096
_RS18670
ABZR87_RS18675: ABZR87_RS18675 - HAD family phosphatase, at 543,131 to 543,847
_RS18675
ABZR87_RS18680: ABZR87_RS18680 - carbohydrate ABC transporter permease, at 543,844 to 544,665
_RS18680
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 541.001 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.517 kb on + strand, within ABZR87_RS18665 at 541.518 kb on - strand, within ABZR87_RS18665 at 541.518 kb on - strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.596 kb on - strand, within ABZR87_RS18665 at 541.596 kb on - strand, within ABZR87_RS18665 at 541.598 kb on + strand, within ABZR87_RS18665 at 541.718 kb on + strand, within ABZR87_RS18665 at 541.718 kb on + strand, within ABZR87_RS18665 at 541.719 kb on - strand, within ABZR87_RS18665 at 541.758 kb on - strand, within ABZR87_RS18665 at 541.826 kb on - strand at 541.868 kb on + strand at 541.868 kb on + strand at 541.868 kb on + strand at 541.869 kb on - strand at 542.168 kb on + strand, within ABZR87_RS18670 at 542.168 kb on + strand, within ABZR87_RS18670 at 542.169 kb on - strand, within ABZR87_RS18670 at 542.432 kb on + strand, within ABZR87_RS18670 at 542.432 kb on + strand, within ABZR87_RS18670 at 542.432 kb on + strand, within ABZR87_RS18670 at 542.433 kb on - strand, within ABZR87_RS18670 at 542.433 kb on - strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.532 kb on - strand, within ABZR87_RS18670 at 542.532 kb on - strand, within ABZR87_RS18670 at 542.532 kb on - strand, within ABZR87_RS18670 at 542.755 kb on + strand, within ABZR87_RS18670 at 542.837 kb on + strand, within ABZR87_RS18670 at 542.837 kb on + strand, within ABZR87_RS18670 at 542.837 kb on + strand, within ABZR87_RS18670 at 542.846 kb on + strand, within ABZR87_RS18670 at 542.884 kb on + strand, within ABZR87_RS18670 at 543.059 kb on + strand at 543.060 kb on - strand at 543.188 kb on - strand at 543.266 kb on + strand, within ABZR87_RS18675 at 543.266 kb on + strand, within ABZR87_RS18675 at 543.267 kb on - strand, within ABZR87_RS18675 at 543.370 kb on - strand, within ABZR87_RS18675 at 543.406 kb on - strand, within ABZR87_RS18675 at 543.412 kb on + strand, within ABZR87_RS18675 at 543.412 kb on + strand, within ABZR87_RS18675 at 543.413 kb on - strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.433 kb on + strand, within ABZR87_RS18675 at 543.433 kb on + strand, within ABZR87_RS18675 at 543.433 kb on + strand, within ABZR87_RS18675 at 543.434 kb on - strand, within ABZR87_RS18675 at 543.434 kb on - strand, within ABZR87_RS18675 at 543.717 kb on - strand, within ABZR87_RS18675 at 543.717 kb on - strand, within ABZR87_RS18675 at 543.825 kb on + strand at 543.977 kb on + strand, within ABZR87_RS18680
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 541,001 + ABZR87_RS18665 0.33 -0.2 541,092 + ABZR87_RS18665 0.40 +0.6 541,092 + ABZR87_RS18665 0.40 +0.6 541,092 + ABZR87_RS18665 0.40 -0.5 541,092 + ABZR87_RS18665 0.40 +0.3 541,092 + ABZR87_RS18665 0.40 +0.5 541,093 - ABZR87_RS18665 0.40 +2.2 541,093 - ABZR87_RS18665 0.40 +0.6 541,093 - ABZR87_RS18665 0.40 +1.0 541,093 - ABZR87_RS18665 0.40 -1.4 541,093 - ABZR87_RS18665 0.40 -0.2 541,093 - ABZR87_RS18665 0.40 +0.5 541,517 + ABZR87_RS18665 0.70 -2.0 541,518 - ABZR87_RS18665 0.70 +0.1 541,518 - ABZR87_RS18665 0.70 +0.2 541,595 + ABZR87_RS18665 0.75 +0.6 541,595 + ABZR87_RS18665 0.75 -0.1 541,595 + ABZR87_RS18665 0.75 -0.3 541,595 + ABZR87_RS18665 0.75 +1.5 541,596 - ABZR87_RS18665 0.75 +2.3 541,596 - ABZR87_RS18665 0.75 -0.7 541,598 + ABZR87_RS18665 0.76 +2.1 541,718 + ABZR87_RS18665 0.84 -3.8 541,718 + ABZR87_RS18665 0.84 +1.0 541,719 - ABZR87_RS18665 0.84 -1.4 541,758 - ABZR87_RS18665 0.87 +0.7 541,826 - -3.4 541,868 + -1.0 541,868 + -2.1 541,868 + -0.6 541,869 - -0.6 542,168 + ABZR87_RS18670 0.17 +0.3 542,168 + ABZR87_RS18670 0.17 +0.0 542,169 - ABZR87_RS18670 0.17 +0.2 542,432 + ABZR87_RS18670 0.41 -3.2 542,432 + ABZR87_RS18670 0.41 -3.0 542,432 + ABZR87_RS18670 0.41 +2.0 542,433 - ABZR87_RS18670 0.41 -0.1 542,433 - ABZR87_RS18670 0.41 -0.2 542,531 + ABZR87_RS18670 0.49 -2.8 542,531 + ABZR87_RS18670 0.49 -0.2 542,531 + ABZR87_RS18670 0.49 -1.6 542,531 + ABZR87_RS18670 0.49 -3.2 542,532 - ABZR87_RS18670 0.50 -1.7 542,532 - ABZR87_RS18670 0.50 -0.0 542,532 - ABZR87_RS18670 0.50 +1.1 542,755 + ABZR87_RS18670 0.69 +0.8 542,837 + ABZR87_RS18670 0.77 +0.5 542,837 + ABZR87_RS18670 0.77 -2.2 542,837 + ABZR87_RS18670 0.77 -3.6 542,846 + ABZR87_RS18670 0.78 +0.9 542,884 + ABZR87_RS18670 0.81 +0.3 543,059 + +1.3 543,060 - +0.0 543,188 - -1.6 543,266 + ABZR87_RS18675 0.19 +0.3 543,266 + ABZR87_RS18675 0.19 -0.8 543,267 - ABZR87_RS18675 0.19 +1.6 543,370 - ABZR87_RS18675 0.33 -2.5 543,406 - ABZR87_RS18675 0.38 +1.9 543,412 + ABZR87_RS18675 0.39 +0.8 543,412 + ABZR87_RS18675 0.39 -1.7 543,413 - ABZR87_RS18675 0.39 -3.8 543,414 + ABZR87_RS18675 0.39 +1.7 543,414 + ABZR87_RS18675 0.39 +0.3 543,414 + ABZR87_RS18675 0.39 -2.5 543,414 + ABZR87_RS18675 0.39 +0.3 543,414 + ABZR87_RS18675 0.39 -1.4 543,414 + ABZR87_RS18675 0.39 -3.6 543,414 + ABZR87_RS18675 0.39 -1.0 543,414 + ABZR87_RS18675 0.39 -1.2 543,414 + ABZR87_RS18675 0.39 -2.7 543,415 - ABZR87_RS18675 0.40 -1.3 543,415 - ABZR87_RS18675 0.40 +0.3 543,415 - ABZR87_RS18675 0.40 -3.1 543,415 - ABZR87_RS18675 0.40 -3.7 543,415 - ABZR87_RS18675 0.40 -1.2 543,433 + ABZR87_RS18675 0.42 +1.4 543,433 + ABZR87_RS18675 0.42 -1.2 543,433 + ABZR87_RS18675 0.42 +1.0 543,434 - ABZR87_RS18675 0.42 -0.8 543,434 - ABZR87_RS18675 0.42 -3.4 543,717 - ABZR87_RS18675 0.82 +0.2 543,717 - ABZR87_RS18675 0.82 +0.7 543,825 + -2.9 543,977 + ABZR87_RS18680 0.16 +1.2
Or see this region's nucleotide sequence