Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18615

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18610 and ABZR87_RS18615 overlap by 4 nucleotidesABZR87_RS18615 and ABZR87_RS18620 overlap by 4 nucleotidesABZR87_RS18620 and ABZR87_RS18625 are separated by 1 nucleotides ABZR87_RS18610: ABZR87_RS18610 - DUF4178 domain-containing protein, at 528,631 to 530,079 _RS18610 ABZR87_RS18615: ABZR87_RS18615 - hypothetical protein, at 530,076 to 530,264 _RS18615 ABZR87_RS18620: ABZR87_RS18620 - adenosylmethionine decarboxylase, at 530,261 to 530,686 _RS18620 ABZR87_RS18625: ABZR87_RS18625 - sensor domain-containing diguanylate cyclase, at 530,688 to 531,734 _RS18625 Position (kb) 530 531Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 529.166 kb on - strand, within ABZR87_RS18610at 529.166 kb on - strand, within ABZR87_RS18610at 529.192 kb on + strand, within ABZR87_RS18610at 529.193 kb on - strand, within ABZR87_RS18610at 529.549 kb on + strand, within ABZR87_RS18610at 529.550 kb on - strand, within ABZR87_RS18610at 529.550 kb on - strand, within ABZR87_RS18610at 529.559 kb on - strand, within ABZR87_RS18610at 529.682 kb on - strand, within ABZR87_RS18610at 529.699 kb on + strand, within ABZR87_RS18610at 529.700 kb on - strand, within ABZR87_RS18610at 529.700 kb on - strand, within ABZR87_RS18610at 529.717 kb on + strand, within ABZR87_RS18610at 529.717 kb on + strand, within ABZR87_RS18610at 529.717 kb on + strand, within ABZR87_RS18610at 529.769 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.922 kb on - strand, within ABZR87_RS18610at 529.922 kb on - strand, within ABZR87_RS18610at 529.922 kb on - strand, within ABZR87_RS18610at 530.007 kb on + strandat 530.097 kb on + strand, within ABZR87_RS18615at 530.097 kb on + strand, within ABZR87_RS18615at 530.098 kb on - strand, within ABZR87_RS18615at 530.098 kb on - strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.129 kb on + strand, within ABZR87_RS18615at 530.129 kb on + strand, within ABZR87_RS18615at 530.130 kb on - strand, within ABZR87_RS18615at 530.130 kb on - strand, within ABZR87_RS18615at 530.172 kb on + strand, within ABZR87_RS18615at 530.184 kb on - strand, within ABZR87_RS18615at 530.184 kb on - strand, within ABZR87_RS18615at 530.202 kb on + strand, within ABZR87_RS18615at 530.336 kb on + strand, within ABZR87_RS18620at 530.337 kb on - strand, within ABZR87_RS18620at 530.533 kb on + strand, within ABZR87_RS18620at 530.534 kb on - strand, within ABZR87_RS18620at 530.534 kb on - strand, within ABZR87_RS18620at 530.689 kb on + strandat 530.689 kb on + strandat 530.689 kb on + strandat 530.689 kb on + strandat 530.689 kb on + strandat 530.690 kb on - strandat 530.690 kb on - strandat 530.709 kb on + strandat 530.710 kb on - strandat 530.710 kb on - strandat 530.924 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.047 kb on - strand, within ABZR87_RS18625at 531.050 kb on + strand, within ABZR87_RS18625at 531.051 kb on - strand, within ABZR87_RS18625

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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529,166 - ABZR87_RS18610 0.37 -2.0
529,166 - ABZR87_RS18610 0.37 +0.5
529,192 + ABZR87_RS18610 0.39 +1.3
529,193 - ABZR87_RS18610 0.39 +0.1
529,549 + ABZR87_RS18610 0.63 +0.7
529,550 - ABZR87_RS18610 0.63 +0.6
529,550 - ABZR87_RS18610 0.63 +0.9
529,559 - ABZR87_RS18610 0.64 +1.2
529,682 - ABZR87_RS18610 0.73 -1.1
529,699 + ABZR87_RS18610 0.74 -3.5
529,700 - ABZR87_RS18610 0.74 -3.5
529,700 - ABZR87_RS18610 0.74 +3.7
529,717 + ABZR87_RS18610 0.75 +0.4
529,717 + ABZR87_RS18610 0.75 -1.9
529,717 + ABZR87_RS18610 0.75 -2.9
529,769 + ABZR87_RS18610 0.79 -0.5
529,921 + ABZR87_RS18610 0.89 +2.0
529,921 + ABZR87_RS18610 0.89 +0.7
529,921 + ABZR87_RS18610 0.89 -0.7
529,921 + ABZR87_RS18610 0.89 +1.1
529,921 + ABZR87_RS18610 0.89 -1.8
529,922 - ABZR87_RS18610 0.89 +2.3
529,922 - ABZR87_RS18610 0.89 +0.0
529,922 - ABZR87_RS18610 0.89 -3.5
530,007 + +1.8
530,097 + ABZR87_RS18615 0.11 +0.6
530,097 + ABZR87_RS18615 0.11 -4.0
530,098 - ABZR87_RS18615 0.12 +1.3
530,098 - ABZR87_RS18615 0.12 -0.3
530,127 + ABZR87_RS18615 0.27 +0.2
530,127 + ABZR87_RS18615 0.27 +1.1
530,127 + ABZR87_RS18615 0.27 -1.5
530,127 + ABZR87_RS18615 0.27 +0.2
530,127 + ABZR87_RS18615 0.27 -1.6
530,127 + ABZR87_RS18615 0.27 +1.8
530,127 + ABZR87_RS18615 0.27 -1.7
530,128 - ABZR87_RS18615 0.28 -0.4
530,128 - ABZR87_RS18615 0.28 +0.8
530,128 - ABZR87_RS18615 0.28 -0.8
530,128 - ABZR87_RS18615 0.28 -1.0
530,129 + ABZR87_RS18615 0.28 -1.4
530,129 + ABZR87_RS18615 0.28 -1.1
530,130 - ABZR87_RS18615 0.29 -0.3
530,130 - ABZR87_RS18615 0.29 -1.4
530,172 + ABZR87_RS18615 0.51 -3.9
530,184 - ABZR87_RS18615 0.57 -1.7
530,184 - ABZR87_RS18615 0.57 +2.3
530,202 + ABZR87_RS18615 0.67 -0.7
530,336 + ABZR87_RS18620 0.18 -1.3
530,337 - ABZR87_RS18620 0.18 -0.4
530,533 + ABZR87_RS18620 0.64 +0.2
530,534 - ABZR87_RS18620 0.64 -1.4
530,534 - ABZR87_RS18620 0.64 +2.1
530,689 + -1.1
530,689 + -0.2
530,689 + -0.2
530,689 + -1.0
530,689 + -2.9
530,690 - +0.6
530,690 - +0.4
530,709 + +0.3
530,710 - -0.2
530,710 - -2.2
530,924 + ABZR87_RS18625 0.23 -0.9
531,046 + ABZR87_RS18625 0.34 -0.8
531,046 + ABZR87_RS18625 0.34 -3.5
531,046 + ABZR87_RS18625 0.34 -0.7
531,046 + ABZR87_RS18625 0.34 -3.8
531,047 - ABZR87_RS18625 0.34 -1.3
531,050 + ABZR87_RS18625 0.35 -0.7
531,051 - ABZR87_RS18625 0.35 +1.6

Or see this region's nucleotide sequence