Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18365 and ABZR87_RS18370 are separated by 35 nucleotides ABZR87_RS18370 and ABZR87_RS18375 are separated by 177 nucleotides
ABZR87_RS18365: ABZR87_RS18365 - helix-turn-helix domain-containing GNAT family N-acetyltransferase, at 486,886 to 487,860
_RS18365
ABZR87_RS18370: ABZR87_RS18370 - arylamine N-acetyltransferase, at 487,896 to 488,705
_RS18370
ABZR87_RS18375: ABZR87_RS18375 - hypothetical protein, at 488,883 to 489,161
_RS18375
Position (kb) 487
488
489 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 487.396 kb on + strand, within ABZR87_RS18365 at 487.397 kb on - strand, within ABZR87_RS18365 at 487.397 kb on - strand, within ABZR87_RS18365 at 487.445 kb on - strand, within ABZR87_RS18365 at 487.720 kb on + strand, within ABZR87_RS18365 at 487.721 kb on - strand, within ABZR87_RS18365 at 487.721 kb on - strand, within ABZR87_RS18365 at 487.762 kb on + strand, within ABZR87_RS18365 at 487.785 kb on + strand at 487.785 kb on + strand at 487.786 kb on - strand at 487.815 kb on + strand at 487.816 kb on - strand at 487.816 kb on - strand at 487.924 kb on - strand at 488.029 kb on + strand, within ABZR87_RS18370 at 488.029 kb on + strand, within ABZR87_RS18370 at 488.029 kb on + strand, within ABZR87_RS18370 at 488.030 kb on - strand, within ABZR87_RS18370 at 488.030 kb on - strand, within ABZR87_RS18370 at 488.104 kb on - strand, within ABZR87_RS18370 at 488.374 kb on + strand, within ABZR87_RS18370 at 488.375 kb on - strand, within ABZR87_RS18370 at 488.389 kb on + strand, within ABZR87_RS18370 at 488.389 kb on + strand, within ABZR87_RS18370 at 488.390 kb on - strand, within ABZR87_RS18370 at 488.393 kb on + strand, within ABZR87_RS18370 at 488.469 kb on + strand, within ABZR87_RS18370 at 488.469 kb on + strand, within ABZR87_RS18370 at 488.470 kb on - strand, within ABZR87_RS18370 at 488.481 kb on + strand, within ABZR87_RS18370 at 488.481 kb on + strand, within ABZR87_RS18370 at 488.481 kb on + strand, within ABZR87_RS18370 at 488.481 kb on + strand, within ABZR87_RS18370 at 488.482 kb on - strand, within ABZR87_RS18370 at 488.640 kb on + strand at 488.641 kb on - strand at 488.641 kb on - strand at 488.738 kb on + strand at 488.738 kb on + strand at 488.738 kb on + strand at 488.738 kb on + strand at 488.963 kb on + strand, within ABZR87_RS18375 at 488.963 kb on + strand, within ABZR87_RS18375 at 488.964 kb on - strand, within ABZR87_RS18375 at 488.991 kb on - strand, within ABZR87_RS18375 at 488.991 kb on - strand, within ABZR87_RS18375 at 489.024 kb on + strand, within ABZR87_RS18375 at 489.024 kb on + strand, within ABZR87_RS18375 at 489.024 kb on + strand, within ABZR87_RS18375 at 489.025 kb on - strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.038 kb on + strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.039 kb on - strand, within ABZR87_RS18375 at 489.042 kb on + strand, within ABZR87_RS18375 at 489.043 kb on - strand, within ABZR87_RS18375 at 489.084 kb on - strand, within ABZR87_RS18375 at 489.107 kb on - strand, within ABZR87_RS18375 at 489.107 kb on - strand, within ABZR87_RS18375 at 489.136 kb on + strand at 489.239 kb on + strand at 489.335 kb on + strand at 489.394 kb on - strand at 489.420 kb on + strand at 489.420 kb on + strand at 489.422 kb on + strand at 489.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 487,396 + ABZR87_RS18365 0.52 -0.7 487,397 - ABZR87_RS18365 0.52 -1.0 487,397 - ABZR87_RS18365 0.52 -0.6 487,445 - ABZR87_RS18365 0.57 +0.9 487,720 + ABZR87_RS18365 0.86 +0.2 487,721 - ABZR87_RS18365 0.86 -3.7 487,721 - ABZR87_RS18365 0.86 +0.6 487,762 + ABZR87_RS18365 0.90 -2.5 487,785 + +2.4 487,785 + -3.6 487,786 - -1.7 487,815 + +2.1 487,816 - -1.6 487,816 - +0.1 487,924 - -1.4 488,029 + ABZR87_RS18370 0.16 +0.3 488,029 + ABZR87_RS18370 0.16 -3.4 488,029 + ABZR87_RS18370 0.16 -0.5 488,030 - ABZR87_RS18370 0.17 +1.3 488,030 - ABZR87_RS18370 0.17 +0.8 488,104 - ABZR87_RS18370 0.26 +1.5 488,374 + ABZR87_RS18370 0.59 +0.9 488,375 - ABZR87_RS18370 0.59 -0.6 488,389 + ABZR87_RS18370 0.61 -0.0 488,389 + ABZR87_RS18370 0.61 +0.3 488,390 - ABZR87_RS18370 0.61 -3.5 488,393 + ABZR87_RS18370 0.61 -1.4 488,469 + ABZR87_RS18370 0.71 -1.7 488,469 + ABZR87_RS18370 0.71 -2.0 488,470 - ABZR87_RS18370 0.71 -4.0 488,481 + ABZR87_RS18370 0.72 -3.1 488,481 + ABZR87_RS18370 0.72 -0.0 488,481 + ABZR87_RS18370 0.72 +3.9 488,481 + ABZR87_RS18370 0.72 +0.9 488,482 - ABZR87_RS18370 0.72 +0.1 488,640 + -3.4 488,641 - -2.8 488,641 - -0.1 488,738 + +2.0 488,738 + -2.7 488,738 + -2.8 488,738 + -3.1 488,963 + ABZR87_RS18375 0.29 +0.2 488,963 + ABZR87_RS18375 0.29 +0.1 488,964 - ABZR87_RS18375 0.29 +0.3 488,991 - ABZR87_RS18375 0.39 -3.8 488,991 - ABZR87_RS18375 0.39 +1.0 489,024 + ABZR87_RS18375 0.51 -3.5 489,024 + ABZR87_RS18375 0.51 +1.5 489,024 + ABZR87_RS18375 0.51 +0.2 489,025 - ABZR87_RS18375 0.51 -0.7 489,038 + ABZR87_RS18375 0.56 -2.9 489,038 + ABZR87_RS18375 0.56 +0.8 489,038 + ABZR87_RS18375 0.56 +1.0 489,038 + ABZR87_RS18375 0.56 -3.9 489,038 + ABZR87_RS18375 0.56 -0.2 489,038 + ABZR87_RS18375 0.56 +0.8 489,038 + ABZR87_RS18375 0.56 +0.6 489,039 - ABZR87_RS18375 0.56 +2.4 489,039 - ABZR87_RS18375 0.56 -3.4 489,039 - ABZR87_RS18375 0.56 +0.2 489,039 - ABZR87_RS18375 0.56 +1.1 489,039 - ABZR87_RS18375 0.56 +1.9 489,039 - ABZR87_RS18375 0.56 -1.8 489,039 - ABZR87_RS18375 0.56 +0.4 489,042 + ABZR87_RS18375 0.57 -3.3 489,043 - ABZR87_RS18375 0.57 -3.7 489,084 - ABZR87_RS18375 0.72 +3.7 489,107 - ABZR87_RS18375 0.80 -1.2 489,107 - ABZR87_RS18375 0.80 -3.8 489,136 + -2.5 489,239 + -1.2 489,335 + +1.2 489,394 - -1.0 489,420 + +0.8 489,420 + +0.2 489,422 + -0.3 489,499 - -1.9
Or see this region's nucleotide sequence