Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18320 and ABZR87_RS18325 are separated by 7 nucleotides ABZR87_RS18325 and ABZR87_RS18330 are separated by 2 nucleotides ABZR87_RS18330 and ABZR87_RS18335 overlap by 4 nucleotides ABZR87_RS18335 and ABZR87_RS18340 are separated by 217 nucleotides
ABZR87_RS18320: ABZR87_RS18320 - HEAT repeat domain-containing protein, at 476,823 to 477,782
_RS18320
ABZR87_RS18325: ABZR87_RS18325 - ferredoxin family protein, at 477,790 to 478,056
_RS18325
ABZR87_RS18330: ABZR87_RS18330 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 478,059 to 479,783
_RS18330
ABZR87_RS18335: ABZR87_RS18335 - GntR family transcriptional regulator, at 479,780 to 480,565
_RS18335
ABZR87_RS18340: ABZR87_RS18340 - helix-turn-helix domain-containing protein, at 480,783 to 481,718
_RS18340
Position (kb) 478
479
480 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 477.077 kb on - strand, within ABZR87_RS18320 at 477.077 kb on - strand, within ABZR87_RS18320 at 477.478 kb on + strand, within ABZR87_RS18320 at 477.803 kb on + strand at 477.860 kb on + strand, within ABZR87_RS18325 at 477.860 kb on + strand, within ABZR87_RS18325 at 478.127 kb on - strand at 478.177 kb on + strand at 478.177 kb on + strand at 478.177 kb on + strand at 478.223 kb on - strand at 478.241 kb on - strand, within ABZR87_RS18330 at 478.241 kb on - strand, within ABZR87_RS18330 at 478.438 kb on + strand, within ABZR87_RS18330 at 478.466 kb on - strand, within ABZR87_RS18330 at 478.582 kb on + strand, within ABZR87_RS18330 at 478.582 kb on + strand, within ABZR87_RS18330 at 478.583 kb on - strand, within ABZR87_RS18330 at 478.583 kb on - strand, within ABZR87_RS18330 at 478.615 kb on + strand, within ABZR87_RS18330 at 478.615 kb on + strand, within ABZR87_RS18330 at 478.615 kb on + strand, within ABZR87_RS18330 at 478.615 kb on + strand, within ABZR87_RS18330 at 478.616 kb on - strand, within ABZR87_RS18330 at 478.636 kb on + strand, within ABZR87_RS18330 at 478.636 kb on + strand, within ABZR87_RS18330 at 478.636 kb on + strand, within ABZR87_RS18330 at 478.637 kb on - strand, within ABZR87_RS18330 at 478.637 kb on - strand, within ABZR87_RS18330 at 478.637 kb on - strand, within ABZR87_RS18330 at 478.637 kb on - strand, within ABZR87_RS18330 at 478.637 kb on - strand, within ABZR87_RS18330 at 478.637 kb on - strand, within ABZR87_RS18330 at 478.673 kb on - strand, within ABZR87_RS18330 at 478.711 kb on + strand, within ABZR87_RS18330 at 478.712 kb on - strand, within ABZR87_RS18330 at 478.712 kb on - strand, within ABZR87_RS18330 at 478.927 kb on + strand, within ABZR87_RS18330 at 478.927 kb on + strand, within ABZR87_RS18330 at 478.928 kb on - strand, within ABZR87_RS18330 at 478.957 kb on + strand, within ABZR87_RS18330 at 478.957 kb on + strand, within ABZR87_RS18330 at 479.023 kb on + strand, within ABZR87_RS18330 at 479.024 kb on - strand, within ABZR87_RS18330 at 479.024 kb on - strand, within ABZR87_RS18330 at 479.149 kb on + strand, within ABZR87_RS18330 at 479.360 kb on - strand, within ABZR87_RS18330 at 479.404 kb on + strand, within ABZR87_RS18330 at 479.404 kb on + strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.437 kb on + strand, within ABZR87_RS18330 at 479.496 kb on - strand, within ABZR87_RS18330 at 479.515 kb on + strand, within ABZR87_RS18330 at 479.515 kb on + strand, within ABZR87_RS18330 at 479.516 kb on - strand, within ABZR87_RS18330 at 479.516 kb on - strand, within ABZR87_RS18330 at 479.521 kb on + strand, within ABZR87_RS18330 at 479.521 kb on + strand, within ABZR87_RS18330 at 479.521 kb on + strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.523 kb on + strand, within ABZR87_RS18330 at 479.523 kb on + strand, within ABZR87_RS18330 at 479.524 kb on - strand, within ABZR87_RS18330 at 479.524 kb on - strand, within ABZR87_RS18330 at 479.575 kb on + strand, within ABZR87_RS18330 at 479.575 kb on + strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.762 kb on - strand at 479.777 kb on + strand at 479.778 kb on - strand at 479.778 kb on - strand at 479.778 kb on - strand at 479.851 kb on - strand at 480.474 kb on + strand, within ABZR87_RS18335 at 480.474 kb on + strand, within ABZR87_RS18335 at 480.475 kb on - strand, within ABZR87_RS18335 at 480.553 kb on + strand at 480.603 kb on + strand at 480.616 kb on + strand at 480.616 kb on + strand at 480.616 kb on + strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.639 kb on - strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.677 kb on + strand at 480.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 477,077 - ABZR87_RS18320 0.26 +0.9 477,077 - ABZR87_RS18320 0.26 -0.4 477,478 + ABZR87_RS18320 0.68 +1.0 477,803 + +1.1 477,860 + ABZR87_RS18325 0.26 -3.2 477,860 + ABZR87_RS18325 0.26 +1.8 478,127 - +1.5 478,177 + +0.4 478,177 + -3.0 478,177 + +0.3 478,223 - -3.7 478,241 - ABZR87_RS18330 0.11 +0.6 478,241 - ABZR87_RS18330 0.11 +0.1 478,438 + ABZR87_RS18330 0.22 +1.1 478,466 - ABZR87_RS18330 0.24 -3.1 478,582 + ABZR87_RS18330 0.30 -0.5 478,582 + ABZR87_RS18330 0.30 -0.8 478,583 - ABZR87_RS18330 0.30 +0.4 478,583 - ABZR87_RS18330 0.30 -1.5 478,615 + ABZR87_RS18330 0.32 +1.0 478,615 + ABZR87_RS18330 0.32 -0.1 478,615 + ABZR87_RS18330 0.32 -2.3 478,615 + ABZR87_RS18330 0.32 +1.1 478,616 - ABZR87_RS18330 0.32 -1.5 478,636 + ABZR87_RS18330 0.33 +0.6 478,636 + ABZR87_RS18330 0.33 -1.3 478,636 + ABZR87_RS18330 0.33 -1.3 478,637 - ABZR87_RS18330 0.34 -1.0 478,637 - ABZR87_RS18330 0.34 -1.4 478,637 - ABZR87_RS18330 0.34 +1.6 478,637 - ABZR87_RS18330 0.34 -0.6 478,637 - ABZR87_RS18330 0.34 -3.6 478,637 - ABZR87_RS18330 0.34 +1.0 478,673 - ABZR87_RS18330 0.36 -1.5 478,711 + ABZR87_RS18330 0.38 +0.5 478,712 - ABZR87_RS18330 0.38 -3.5 478,712 - ABZR87_RS18330 0.38 -2.0 478,927 + ABZR87_RS18330 0.50 -1.4 478,927 + ABZR87_RS18330 0.50 -3.5 478,928 - ABZR87_RS18330 0.50 +0.2 478,957 + ABZR87_RS18330 0.52 -0.9 478,957 + ABZR87_RS18330 0.52 +0.3 479,023 + ABZR87_RS18330 0.56 -0.0 479,024 - ABZR87_RS18330 0.56 -0.5 479,024 - ABZR87_RS18330 0.56 -1.0 479,149 + ABZR87_RS18330 0.63 -0.3 479,360 - ABZR87_RS18330 0.75 -0.8 479,404 + ABZR87_RS18330 0.78 +1.0 479,404 + ABZR87_RS18330 0.78 -0.1 479,405 - ABZR87_RS18330 0.78 -0.6 479,405 - ABZR87_RS18330 0.78 +0.7 479,405 - ABZR87_RS18330 0.78 -1.3 479,405 - ABZR87_RS18330 0.78 +0.7 479,405 - ABZR87_RS18330 0.78 -0.1 479,405 - ABZR87_RS18330 0.78 +0.4 479,405 - ABZR87_RS18330 0.78 +0.0 479,437 + ABZR87_RS18330 0.80 +2.0 479,496 - ABZR87_RS18330 0.83 +1.0 479,515 + ABZR87_RS18330 0.84 +0.7 479,515 + ABZR87_RS18330 0.84 -1.0 479,516 - ABZR87_RS18330 0.84 +2.0 479,516 - ABZR87_RS18330 0.84 +1.5 479,521 + ABZR87_RS18330 0.85 +0.4 479,521 + ABZR87_RS18330 0.85 -0.4 479,521 + ABZR87_RS18330 0.85 +1.6 479,522 - ABZR87_RS18330 0.85 -1.9 479,522 - ABZR87_RS18330 0.85 +2.8 479,522 - ABZR87_RS18330 0.85 -2.2 479,522 - ABZR87_RS18330 0.85 +0.2 479,523 + ABZR87_RS18330 0.85 +1.6 479,523 + ABZR87_RS18330 0.85 +1.7 479,524 - ABZR87_RS18330 0.85 +1.6 479,524 - ABZR87_RS18330 0.85 +2.2 479,575 + ABZR87_RS18330 0.88 +0.5 479,575 + ABZR87_RS18330 0.88 +0.6 479,576 - ABZR87_RS18330 0.88 -1.5 479,576 - ABZR87_RS18330 0.88 -0.3 479,576 - ABZR87_RS18330 0.88 -0.7 479,576 - ABZR87_RS18330 0.88 -1.4 479,576 - ABZR87_RS18330 0.88 +1.7 479,762 - -4.2 479,777 + -2.3 479,778 - -1.3 479,778 - -0.0 479,778 - +1.7 479,851 - -1.9 480,474 + ABZR87_RS18335 0.88 +0.3 480,474 + ABZR87_RS18335 0.88 -2.7 480,475 - ABZR87_RS18335 0.88 -2.1 480,553 + -0.7 480,603 + -1.2 480,616 + -0.2 480,616 + +0.2 480,616 + -3.7 480,617 - -1.2 480,617 - -2.7 480,617 - -4.0 480,617 - -4.4 480,617 - -1.2 480,639 - -2.3 480,675 + +1.3 480,675 + -3.1 480,675 + -1.9 480,675 + -3.1 480,676 - -0.2 480,676 - -0.1 480,676 - -1.3 480,677 + +2.3 480,678 - -3.0
Or see this region's nucleotide sequence