Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18115 and ABZR87_RS18120 overlap by 26 nucleotides ABZR87_RS18120 and ABZR87_RS18125 are separated by 38 nucleotides ABZR87_RS18125 and ABZR87_RS18130 overlap by 1 nucleotides
ABZR87_RS18115: ABZR87_RS18115 - FHA domain-containing protein, at 426,585 to 427,856
_RS18115
ABZR87_RS18120: ABZR87_RS18120 - type III secretion system outer membrane ring subunit SctC, at 427,831 to 429,708
_RS18120
ABZR87_RS18125: ABZR87_RS18125 - flagellar biosynthetic protein FliQ, at 429,747 to 430,025
_RS18125
ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220
_RS18130
Position (kb) 427
428
429
430 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 426.868 kb on + strand, within ABZR87_RS18115 at 426.869 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115 at 427.201 kb on + strand, within ABZR87_RS18115 at 427.202 kb on - strand, within ABZR87_RS18115 at 427.216 kb on + strand, within ABZR87_RS18115 at 427.217 kb on - strand, within ABZR87_RS18115 at 427.680 kb on + strand, within ABZR87_RS18115 at 427.680 kb on + strand, within ABZR87_RS18115 at 427.680 kb on + strand, within ABZR87_RS18115 at 427.681 kb on - strand, within ABZR87_RS18115 at 427.681 kb on - strand, within ABZR87_RS18115 at 427.681 kb on - strand, within ABZR87_RS18115 at 427.792 kb on + strand at 427.792 kb on + strand at 427.792 kb on + strand at 427.793 kb on - strand at 428.081 kb on + strand, within ABZR87_RS18120 at 428.117 kb on + strand, within ABZR87_RS18120 at 428.118 kb on - strand, within ABZR87_RS18120 at 428.399 kb on + strand, within ABZR87_RS18120 at 428.399 kb on + strand, within ABZR87_RS18120 at 428.435 kb on + strand, within ABZR87_RS18120 at 428.435 kb on + strand, within ABZR87_RS18120 at 428.435 kb on + strand, within ABZR87_RS18120 at 428.436 kb on - strand, within ABZR87_RS18120 at 428.552 kb on + strand, within ABZR87_RS18120 at 428.552 kb on + strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.553 kb on - strand, within ABZR87_RS18120 at 428.813 kb on + strand, within ABZR87_RS18120 at 428.948 kb on + strand, within ABZR87_RS18120 at 429.068 kb on + strand, within ABZR87_RS18120 at 429.152 kb on + strand, within ABZR87_RS18120 at 429.152 kb on + strand, within ABZR87_RS18120 at 429.152 kb on + strand, within ABZR87_RS18120 at 429.153 kb on - strand, within ABZR87_RS18120 at 429.153 kb on - strand, within ABZR87_RS18120 at 429.263 kb on + strand, within ABZR87_RS18120 at 429.263 kb on + strand, within ABZR87_RS18120 at 429.264 kb on - strand, within ABZR87_RS18120 at 429.264 kb on - strand, within ABZR87_RS18120 at 429.264 kb on - strand, within ABZR87_RS18120 at 429.408 kb on - strand, within ABZR87_RS18120 at 429.408 kb on - strand, within ABZR87_RS18120 at 429.425 kb on + strand, within ABZR87_RS18120 at 429.425 kb on + strand, within ABZR87_RS18120 at 429.425 kb on + strand, within ABZR87_RS18120 at 429.426 kb on - strand, within ABZR87_RS18120 at 429.428 kb on + strand, within ABZR87_RS18120 at 429.443 kb on + strand, within ABZR87_RS18120 at 429.661 kb on - strand at 430.185 kb on + strand at 430.185 kb on + strand at 430.185 kb on + strand at 430.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 426,868 + ABZR87_RS18115 0.22 +1.0 426,869 - ABZR87_RS18115 0.22 +1.7 426,938 - ABZR87_RS18115 0.28 +0.7 426,938 - ABZR87_RS18115 0.28 -0.8 427,123 + ABZR87_RS18115 0.42 +1.1 427,123 + ABZR87_RS18115 0.42 +0.3 427,123 + ABZR87_RS18115 0.42 -2.2 427,123 + ABZR87_RS18115 0.42 +0.6 427,123 + ABZR87_RS18115 0.42 +0.3 427,123 + ABZR87_RS18115 0.42 -1.8 427,123 + ABZR87_RS18115 0.42 -2.8 427,124 - ABZR87_RS18115 0.42 +1.5 427,124 - ABZR87_RS18115 0.42 +0.1 427,201 + ABZR87_RS18115 0.48 -2.8 427,202 - ABZR87_RS18115 0.49 -1.3 427,216 + ABZR87_RS18115 0.50 +0.2 427,217 - ABZR87_RS18115 0.50 -3.9 427,680 + ABZR87_RS18115 0.86 -1.0 427,680 + ABZR87_RS18115 0.86 -2.6 427,680 + ABZR87_RS18115 0.86 -0.7 427,681 - ABZR87_RS18115 0.86 +0.3 427,681 - ABZR87_RS18115 0.86 -1.7 427,681 - ABZR87_RS18115 0.86 -1.2 427,792 + +0.8 427,792 + +0.4 427,792 + +0.2 427,793 - +1.6 428,081 + ABZR87_RS18120 0.13 -0.3 428,117 + ABZR87_RS18120 0.15 -1.6 428,118 - ABZR87_RS18120 0.15 -1.6 428,399 + ABZR87_RS18120 0.30 -0.5 428,399 + ABZR87_RS18120 0.30 -2.5 428,435 + ABZR87_RS18120 0.32 -3.3 428,435 + ABZR87_RS18120 0.32 -1.0 428,435 + ABZR87_RS18120 0.32 -3.1 428,436 - ABZR87_RS18120 0.32 -0.6 428,552 + ABZR87_RS18120 0.38 -1.5 428,552 + ABZR87_RS18120 0.38 +1.2 428,553 - ABZR87_RS18120 0.38 +0.3 428,553 - ABZR87_RS18120 0.38 -0.2 428,553 - ABZR87_RS18120 0.38 -1.1 428,553 - ABZR87_RS18120 0.38 +0.8 428,553 - ABZR87_RS18120 0.38 +1.5 428,553 - ABZR87_RS18120 0.38 -1.4 428,553 - ABZR87_RS18120 0.38 -0.4 428,813 + ABZR87_RS18120 0.52 +0.2 428,948 + ABZR87_RS18120 0.59 +0.3 429,068 + ABZR87_RS18120 0.66 -0.4 429,152 + ABZR87_RS18120 0.70 -1.8 429,152 + ABZR87_RS18120 0.70 +0.2 429,152 + ABZR87_RS18120 0.70 +1.7 429,153 - ABZR87_RS18120 0.70 +0.2 429,153 - ABZR87_RS18120 0.70 +0.3 429,263 + ABZR87_RS18120 0.76 +0.1 429,263 + ABZR87_RS18120 0.76 -0.6 429,264 - ABZR87_RS18120 0.76 +2.1 429,264 - ABZR87_RS18120 0.76 -3.0 429,264 - ABZR87_RS18120 0.76 +1.0 429,408 - ABZR87_RS18120 0.84 +0.8 429,408 - ABZR87_RS18120 0.84 +1.2 429,425 + ABZR87_RS18120 0.85 -2.6 429,425 + ABZR87_RS18120 0.85 +0.2 429,425 + ABZR87_RS18120 0.85 +0.2 429,426 - ABZR87_RS18120 0.85 -0.6 429,428 + ABZR87_RS18120 0.85 +0.3 429,443 + ABZR87_RS18120 0.86 -2.3 429,661 - -1.1 430,185 + -0.8 430,185 + +0.1 430,185 + +1.2 430,186 - -0.2
Or see this region's nucleotide sequence