Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17755 and ABZR87_RS17760 are separated by 73 nucleotides ABZR87_RS17760 and ABZR87_RS17765 are separated by 65 nucleotides ABZR87_RS17765 and ABZR87_RS17770 are separated by 195 nucleotides
ABZR87_RS17755: ABZR87_RS17755 - methionine ABC transporter permease, at 344,799 to 345,443
_RS17755
ABZR87_RS17760: ABZR87_RS17760 - ATP-binding cassette domain-containing protein, at 345,517 to 346,248
_RS17760
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668
_RS17770
Position (kb) 346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 345.377 kb on - strand, within ABZR87_RS17755 at 345.430 kb on + strand at 345.450 kb on - strand at 345.885 kb on + strand, within ABZR87_RS17760 at 345.886 kb on - strand, within ABZR87_RS17760 at 346.211 kb on + strand at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand at 346.451 kb on - strand, within ABZR87_RS17765 at 346.644 kb on - strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.787 kb on - strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.819 kb on - strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 347.105 kb on - strand at 347.163 kb on + strand at 347.205 kb on - strand at 347.558 kb on + strand, within ABZR87_RS17770 at 347.558 kb on + strand, within ABZR87_RS17770 at 347.559 kb on - strand, within ABZR87_RS17770 at 347.629 kb on - strand, within ABZR87_RS17770 at 347.775 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.070 kb on - strand, within ABZR87_RS17770
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 345,377 - ABZR87_RS17755 0.90 -1.0 345,430 + +1.1 345,450 - +1.6 345,885 + ABZR87_RS17760 0.50 +0.3 345,886 - ABZR87_RS17760 0.50 +0.8 346,211 + -3.0 346,343 - -0.3 346,381 + +0.1 346,382 - +0.2 346,451 - ABZR87_RS17765 0.17 -2.2 346,644 - ABZR87_RS17765 0.41 -0.7 346,774 + ABZR87_RS17765 0.57 -1.2 346,774 + ABZR87_RS17765 0.57 +0.8 346,787 - ABZR87_RS17765 0.58 -2.4 346,818 + ABZR87_RS17765 0.62 -3.6 346,818 + ABZR87_RS17765 0.62 +1.7 346,818 + ABZR87_RS17765 0.62 +0.3 346,819 - ABZR87_RS17765 0.62 -0.8 346,834 + ABZR87_RS17765 0.64 -2.9 346,834 + ABZR87_RS17765 0.64 -0.7 346,834 + ABZR87_RS17765 0.64 -1.5 347,105 - +0.6 347,163 + -1.5 347,205 - -0.6 347,558 + ABZR87_RS17770 0.18 +0.9 347,558 + ABZR87_RS17770 0.18 +0.9 347,559 - ABZR87_RS17770 0.18 +0.8 347,629 - ABZR87_RS17770 0.23 +0.8 347,775 + ABZR87_RS17770 0.34 -4.1 348,069 + ABZR87_RS17770 0.55 +2.0 348,069 + ABZR87_RS17770 0.55 +0.1 348,070 - ABZR87_RS17770 0.56 +1.6
Or see this region's nucleotide sequence