Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17720 and ABZR87_RS17725 overlap by 11 nucleotides ABZR87_RS17725 and ABZR87_RS17730 are separated by 51 nucleotides
ABZR87_RS17720: ABZR87_RS17720 - ABC transporter permease, at 338,346 to 339,242
_RS17720
ABZR87_RS17725: ABZR87_RS17725 - ABC transporter ATP-binding protein, at 339,232 to 340,026
_RS17725
ABZR87_RS17730: ABZR87_RS17730 - GntR family transcriptional regulator, at 340,078 to 340,800
_RS17730
Position (kb) 339
340
341 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 338.272 kb on - strand at 338.272 kb on - strand at 338.308 kb on + strand at 338.308 kb on + strand at 338.309 kb on - strand at 338.347 kb on + strand at 338.348 kb on - strand at 338.348 kb on - strand at 338.348 kb on - strand at 338.397 kb on + strand at 338.400 kb on + strand at 338.400 kb on + strand at 338.401 kb on - strand at 338.401 kb on - strand at 338.485 kb on + strand, within ABZR87_RS17720 at 338.485 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.492 kb on - strand, within ABZR87_RS17720 at 338.633 kb on - strand, within ABZR87_RS17720 at 338.633 kb on - strand, within ABZR87_RS17720 at 338.633 kb on - strand, within ABZR87_RS17720 at 338.654 kb on - strand, within ABZR87_RS17720 at 338.917 kb on + strand, within ABZR87_RS17720 at 339.112 kb on + strand, within ABZR87_RS17720 at 339.182 kb on - strand at 339.182 kb on - strand at 339.182 kb on - strand at 339.457 kb on + strand, within ABZR87_RS17725 at 339.644 kb on + strand, within ABZR87_RS17725 at 339.645 kb on - strand, within ABZR87_RS17725 at 339.645 kb on - strand, within ABZR87_RS17725 at 339.867 kb on + strand, within ABZR87_RS17725 at 339.867 kb on + strand, within ABZR87_RS17725 at 339.868 kb on - strand, within ABZR87_RS17725 at 339.896 kb on + strand, within ABZR87_RS17725 at 339.897 kb on - strand, within ABZR87_RS17725 at 339.897 kb on - strand, within ABZR87_RS17725 at 339.897 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 340.070 kb on - strand at 340.154 kb on + strand, within ABZR87_RS17730 at 340.220 kb on + strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.302 kb on - strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.773 kb on - strand at 340.822 kb on - strand at 340.822 kb on - strand at 340.829 kb on + strand at 340.831 kb on + strand at 340.832 kb on - strand at 340.847 kb on - strand at 340.847 kb on - strand at 340.847 kb on - strand at 340.872 kb on - strand at 340.872 kb on - strand at 340.924 kb on - strand at 340.970 kb on + strand at 340.970 kb on + strand at 340.971 kb on - strand at 340.971 kb on - strand at 340.971 kb on - strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.974 kb on - strand at 340.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 338,272 - +0.9 338,272 - +0.4 338,308 + +1.1 338,308 + -2.0 338,309 - -2.2 338,347 + -0.6 338,348 - -0.9 338,348 - +0.4 338,348 - -0.2 338,397 + -0.9 338,400 + +0.5 338,400 + +0.9 338,401 - +0.7 338,401 - +1.4 338,485 + ABZR87_RS17720 0.15 +1.2 338,485 + ABZR87_RS17720 0.15 -0.6 338,491 + ABZR87_RS17720 0.16 -0.5 338,491 + ABZR87_RS17720 0.16 -0.5 338,491 + ABZR87_RS17720 0.16 -0.5 338,491 + ABZR87_RS17720 0.16 -0.1 338,492 - ABZR87_RS17720 0.16 -3.5 338,633 - ABZR87_RS17720 0.32 -0.2 338,633 - ABZR87_RS17720 0.32 -0.8 338,633 - ABZR87_RS17720 0.32 +0.7 338,654 - ABZR87_RS17720 0.34 +0.2 338,917 + ABZR87_RS17720 0.64 -1.3 339,112 + ABZR87_RS17720 0.85 -1.4 339,182 - -1.1 339,182 - +0.3 339,182 - +0.4 339,457 + ABZR87_RS17725 0.28 -2.4 339,644 + ABZR87_RS17725 0.52 -2.5 339,645 - ABZR87_RS17725 0.52 +0.1 339,645 - ABZR87_RS17725 0.52 -2.4 339,867 + ABZR87_RS17725 0.80 -2.2 339,867 + ABZR87_RS17725 0.80 +1.3 339,868 - ABZR87_RS17725 0.80 -2.1 339,896 + ABZR87_RS17725 0.84 -0.3 339,897 - ABZR87_RS17725 0.84 +0.6 339,897 - ABZR87_RS17725 0.84 +0.9 339,897 - ABZR87_RS17725 0.84 -2.9 339,933 - ABZR87_RS17725 0.88 -1.3 339,933 - ABZR87_RS17725 0.88 -2.4 339,933 - ABZR87_RS17725 0.88 +0.1 339,933 - ABZR87_RS17725 0.88 -0.9 339,933 - ABZR87_RS17725 0.88 +0.5 340,070 - -0.4 340,154 + ABZR87_RS17730 0.11 -1.8 340,220 + ABZR87_RS17730 0.20 -3.9 340,221 - ABZR87_RS17730 0.20 -3.1 340,221 - ABZR87_RS17730 0.20 -4.0 340,221 - ABZR87_RS17730 0.20 -4.7 340,293 - ABZR87_RS17730 0.30 +0.9 340,293 - ABZR87_RS17730 0.30 -0.5 340,293 - ABZR87_RS17730 0.30 -5.0 340,302 - ABZR87_RS17730 0.31 -2.7 340,676 + ABZR87_RS17730 0.83 -2.8 340,676 + ABZR87_RS17730 0.83 -0.1 340,676 + ABZR87_RS17730 0.83 -3.5 340,773 - -0.8 340,822 - -0.5 340,822 - +0.3 340,829 + -0.2 340,831 + -0.5 340,832 - -0.0 340,847 - -1.1 340,847 - -1.6 340,847 - -2.6 340,872 - +1.1 340,872 - +1.2 340,924 - +2.2 340,970 + +1.5 340,970 + -2.0 340,971 - +0.4 340,971 - +1.4 340,971 - -0.3 340,973 + -3.2 340,973 + +0.6 340,973 + +0.4 340,973 + -0.1 340,974 - -2.8 340,974 - -1.5
Or see this region's nucleotide sequence