Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17435

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17430 and ABZR87_RS17435 are separated by 239 nucleotidesABZR87_RS17435 and ABZR87_RS17440 are separated by 134 nucleotidesABZR87_RS17440 and ABZR87_RS17445 overlap by 4 nucleotides ABZR87_RS17430: ABZR87_RS17430 - amidohydrolase family protein, at 269,112 to 270,023 _RS17430 ABZR87_RS17435: ABZR87_RS17435 - LysR family transcriptional regulator, at 270,263 to 271,156 _RS17435 ABZR87_RS17440: ABZR87_RS17440 - (2Fe-2S)-binding protein, at 271,291 to 271,755 _RS17440 ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956 _RS17445 Position (kb) 270 271 272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 269.398 kb on + strand, within ABZR87_RS17430at 269.399 kb on - strand, within ABZR87_RS17430at 269.399 kb on - strand, within ABZR87_RS17430at 269.443 kb on + strand, within ABZR87_RS17430at 269.444 kb on - strand, within ABZR87_RS17430at 269.536 kb on + strand, within ABZR87_RS17430at 269.536 kb on + strand, within ABZR87_RS17430at 269.537 kb on - strand, within ABZR87_RS17430at 269.552 kb on + strand, within ABZR87_RS17430at 269.552 kb on + strand, within ABZR87_RS17430at 269.553 kb on - strand, within ABZR87_RS17430at 269.553 kb on - strand, within ABZR87_RS17430at 269.764 kb on + strand, within ABZR87_RS17430at 269.764 kb on + strand, within ABZR87_RS17430at 269.765 kb on - strand, within ABZR87_RS17430at 269.788 kb on + strand, within ABZR87_RS17430at 269.788 kb on + strand, within ABZR87_RS17430at 269.788 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.798 kb on - strand, within ABZR87_RS17430at 269.798 kb on - strand, within ABZR87_RS17430at 269.845 kb on + strand, within ABZR87_RS17430at 269.845 kb on + strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.914 kb on + strand, within ABZR87_RS17430at 269.914 kb on + strand, within ABZR87_RS17430at 269.915 kb on - strand, within ABZR87_RS17430at 269.951 kb on + strandat 270.001 kb on + strandat 270.109 kb on - strandat 270.109 kb on - strandat 270.171 kb on - strandat 270.200 kb on - strandat 270.202 kb on + strandat 270.202 kb on + strandat 270.203 kb on - strandat 270.203 kb on - strandat 270.203 kb on - strandat 270.221 kb on + strandat 270.221 kb on + strandat 270.222 kb on - strandat 270.222 kb on - strandat 270.222 kb on - strandat 270.352 kb on - strandat 270.360 kb on + strand, within ABZR87_RS17435at 270.360 kb on + strand, within ABZR87_RS17435at 270.360 kb on + strand, within ABZR87_RS17435at 270.360 kb on + strand, within ABZR87_RS17435at 270.361 kb on - strand, within ABZR87_RS17435at 270.570 kb on + strand, within ABZR87_RS17435at 270.711 kb on + strand, within ABZR87_RS17435at 270.712 kb on - strand, within ABZR87_RS17435at 270.718 kb on - strand, within ABZR87_RS17435at 270.734 kb on + strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 271.087 kb on + strandat 271.087 kb on + strandat 271.088 kb on - strandat 271.152 kb on + strandat 271.152 kb on + strandat 271.152 kb on + strandat 271.153 kb on - strandat 271.177 kb on + strandat 271.188 kb on - strandat 271.238 kb on + strandat 271.239 kb on - strandat 271.239 kb on - strandat 271.303 kb on - strandat 271.303 kb on - strandat 271.559 kb on + strand, within ABZR87_RS17440at 271.700 kb on - strand, within ABZR87_RS17440at 272.067 kb on + strand, within ABZR87_RS17445at 272.067 kb on + strand, within ABZR87_RS17445at 272.067 kb on + strand, within ABZR87_RS17445at 272.068 kb on - strand, within ABZR87_RS17445at 272.091 kb on + strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.127 kb on + strand, within ABZR87_RS17445at 272.127 kb on + strand, within ABZR87_RS17445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
remove
269,398 + ABZR87_RS17430 0.31 -3.9
269,399 - ABZR87_RS17430 0.31 -1.5
269,399 - ABZR87_RS17430 0.31 +1.8
269,443 + ABZR87_RS17430 0.36 -0.4
269,444 - ABZR87_RS17430 0.36 -2.2
269,536 + ABZR87_RS17430 0.46 -1.2
269,536 + ABZR87_RS17430 0.46 -0.1
269,537 - ABZR87_RS17430 0.47 -3.3
269,552 + ABZR87_RS17430 0.48 -0.4
269,552 + ABZR87_RS17430 0.48 -1.9
269,553 - ABZR87_RS17430 0.48 +1.2
269,553 - ABZR87_RS17430 0.48 -3.2
269,764 + ABZR87_RS17430 0.71 +0.6
269,764 + ABZR87_RS17430 0.71 -4.3
269,765 - ABZR87_RS17430 0.72 +1.3
269,788 + ABZR87_RS17430 0.74 -2.1
269,788 + ABZR87_RS17430 0.74 -0.3
269,788 + ABZR87_RS17430 0.74 -1.0
269,797 + ABZR87_RS17430 0.75 +1.3
269,797 + ABZR87_RS17430 0.75 +0.4
269,797 + ABZR87_RS17430 0.75 -0.5
269,797 + ABZR87_RS17430 0.75 +1.2
269,797 + ABZR87_RS17430 0.75 +0.4
269,798 - ABZR87_RS17430 0.75 +1.9
269,798 - ABZR87_RS17430 0.75 +0.8
269,845 + ABZR87_RS17430 0.80 +0.9
269,845 + ABZR87_RS17430 0.80 +2.4
269,846 - ABZR87_RS17430 0.80 +0.7
269,846 - ABZR87_RS17430 0.80 -0.4
269,846 - ABZR87_RS17430 0.80 +1.0
269,846 - ABZR87_RS17430 0.80 -1.8
269,846 - ABZR87_RS17430 0.80 +0.2
269,914 + ABZR87_RS17430 0.88 +0.0
269,914 + ABZR87_RS17430 0.88 +0.2
269,915 - ABZR87_RS17430 0.88 +1.5
269,951 + -2.9
270,001 + +0.6
270,109 - -1.0
270,109 - -0.1
270,171 - +0.5
270,200 - -4.5
270,202 + -0.6
270,202 + +0.1
270,203 - -2.1
270,203 - -0.7
270,203 - +0.2
270,221 + -3.7
270,221 + -1.5
270,222 - +1.0
270,222 - -1.9
270,222 - +0.6
270,352 - +0.0
270,360 + ABZR87_RS17435 0.11 +0.5
270,360 + ABZR87_RS17435 0.11 +0.1
270,360 + ABZR87_RS17435 0.11 -2.7
270,360 + ABZR87_RS17435 0.11 -3.5
270,361 - ABZR87_RS17435 0.11 -2.1
270,570 + ABZR87_RS17435 0.34 -0.5
270,711 + ABZR87_RS17435 0.50 +1.0
270,712 - ABZR87_RS17435 0.50 +0.6
270,718 - ABZR87_RS17435 0.51 -3.2
270,734 + ABZR87_RS17435 0.53 -1.4
270,735 - ABZR87_RS17435 0.53 -1.2
270,735 - ABZR87_RS17435 0.53 -1.2
270,735 - ABZR87_RS17435 0.53 -2.9
270,735 - ABZR87_RS17435 0.53 -3.7
271,087 + -1.8
271,087 + -0.9
271,088 - +1.3
271,152 + -1.0
271,152 + -2.2
271,152 + -0.3
271,153 - -3.5
271,177 + +1.4
271,188 - -0.4
271,238 + +1.5
271,239 - +0.6
271,239 - -1.8
271,303 - +1.4
271,303 - +0.4
271,559 + ABZR87_RS17440 0.58 +0.8
271,700 - ABZR87_RS17440 0.88 +0.1
272,067 + ABZR87_RS17445 0.14 +1.4
272,067 + ABZR87_RS17445 0.14 +1.2
272,067 + ABZR87_RS17445 0.14 -0.1
272,068 - ABZR87_RS17445 0.14 -2.2
272,091 + ABZR87_RS17445 0.15 -1.0
272,092 - ABZR87_RS17445 0.15 +1.2
272,092 - ABZR87_RS17445 0.15 +1.4
272,092 - ABZR87_RS17445 0.15 -1.8
272,092 - ABZR87_RS17445 0.15 +0.4
272,127 + ABZR87_RS17445 0.17 +0.3
272,127 + ABZR87_RS17445 0.17 +2.5

Or see this region's nucleotide sequence