Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16895 and ABZR87_RS16900 are separated by 287 nucleotides ABZR87_RS16900 and ABZR87_RS16905 are separated by 18 nucleotides ABZR87_RS16905 and ABZR87_RS16910 are separated by 110 nucleotides
ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251
_RS16895
ABZR87_RS16900: ABZR87_RS16900 - EAL domain-containing protein, at 147,539 to 149,710
_RS16900
ABZR87_RS16905: ABZR87_RS16905 - hypothetical protein, at 149,729 to 150,361
_RS16905
ABZR87_RS16910: ABZR87_RS16910 - hypothetical protein, at 150,472 to 150,990
_RS16910
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.580 kb on - strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.696 kb on - strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.843 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.869 kb on + strand, within ABZR87_RS16895 at 146.891 kb on + strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 147.146 kb on - strand at 147.146 kb on - strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.285 kb on + strand at 147.372 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.417 kb on + strand at 147.418 kb on - strand at 147.436 kb on + strand at 147.436 kb on + strand at 147.437 kb on - strand at 147.470 kb on + strand at 147.470 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.479 kb on - strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.539 kb on - strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.904 kb on + strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 148.206 kb on - strand, within ABZR87_RS16900 at 148.387 kb on + strand, within ABZR87_RS16900 at 148.387 kb on + strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.392 kb on - strand, within ABZR87_RS16900 at 148.392 kb on - strand, within ABZR87_RS16900 at 148.578 kb on - strand, within ABZR87_RS16900 at 148.626 kb on - strand, within ABZR87_RS16900 at 148.665 kb on - strand, within ABZR87_RS16900 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.773 kb on - strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.424 kb on - strand, within ABZR87_RS16900 at 149.624 kb on + strand at 149.625 kb on - strand at 149.793 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.159 kb on + strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.411 kb on + strand at 150.411 kb on + strand at 150.412 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.459 kb on - strand at 150.473 kb on + strand at 150.474 kb on - strand at 150.566 kb on + strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 146,579 + ABZR87_RS16895 0.38 -0.5 146,579 + ABZR87_RS16895 0.38 -3.9 146,580 - ABZR87_RS16895 0.38 -1.5 146,644 + ABZR87_RS16895 0.44 -0.1 146,644 + ABZR87_RS16895 0.44 -2.2 146,696 - ABZR87_RS16895 0.48 +2.2 146,704 + ABZR87_RS16895 0.49 +1.3 146,704 + ABZR87_RS16895 0.49 -2.8 146,704 + ABZR87_RS16895 0.49 -3.5 146,704 + ABZR87_RS16895 0.49 -4.2 146,705 - ABZR87_RS16895 0.49 +2.4 146,705 - ABZR87_RS16895 0.49 -4.4 146,705 - ABZR87_RS16895 0.49 -1.1 146,705 - ABZR87_RS16895 0.49 -0.1 146,843 + ABZR87_RS16895 0.62 -0.7 146,845 + ABZR87_RS16895 0.62 +0.8 146,845 + ABZR87_RS16895 0.62 -0.0 146,845 + ABZR87_RS16895 0.62 -3.2 146,845 + ABZR87_RS16895 0.62 -3.2 146,845 + ABZR87_RS16895 0.62 -2.9 146,846 - ABZR87_RS16895 0.62 +0.8 146,846 - ABZR87_RS16895 0.62 +1.2 146,846 - ABZR87_RS16895 0.62 +0.1 146,869 + ABZR87_RS16895 0.64 +0.3 146,891 + ABZR87_RS16895 0.66 -2.7 146,892 - ABZR87_RS16895 0.67 +0.8 146,892 - ABZR87_RS16895 0.67 -2.9 146,892 - ABZR87_RS16895 0.67 -2.1 146,892 - ABZR87_RS16895 0.67 -0.9 146,905 + ABZR87_RS16895 0.68 -0.5 146,905 + ABZR87_RS16895 0.68 -0.4 146,906 - ABZR87_RS16895 0.68 -3.6 146,906 - ABZR87_RS16895 0.68 +1.2 146,906 - ABZR87_RS16895 0.68 +0.6 147,146 - -1.5 147,146 - -3.1 147,251 + +0.1 147,251 + +2.7 147,251 + -0.1 147,252 - +2.0 147,252 - +0.3 147,252 - +0.5 147,252 - +0.1 147,252 - +0.2 147,285 + -0.4 147,372 + +0.4 147,376 + -3.2 147,376 + -0.6 147,376 + +1.1 147,376 + -1.1 147,377 - +2.0 147,377 - -1.3 147,377 - +0.6 147,377 - +0.7 147,417 + +1.5 147,418 - +0.3 147,436 + -2.2 147,436 + -0.5 147,437 - +0.9 147,470 + +0.4 147,470 + -0.5 147,478 + +0.0 147,478 + +1.7 147,478 + +0.9 147,479 - +0.9 147,538 + +1.3 147,538 + -0.8 147,538 + -0.2 147,538 + +0.4 147,539 - +0.9 147,608 + +0.5 147,608 + +0.7 147,608 + -0.5 147,609 - -0.0 147,609 - +0.5 147,609 - -3.4 147,904 + ABZR87_RS16900 0.17 -0.7 147,923 - ABZR87_RS16900 0.18 -0.8 147,923 - ABZR87_RS16900 0.18 -0.6 148,206 - ABZR87_RS16900 0.31 +0.5 148,387 + ABZR87_RS16900 0.39 +1.2 148,387 + ABZR87_RS16900 0.39 -0.1 148,388 - ABZR87_RS16900 0.39 -2.4 148,388 - ABZR87_RS16900 0.39 +0.4 148,388 - ABZR87_RS16900 0.39 +1.2 148,388 - ABZR87_RS16900 0.39 -1.9 148,388 - ABZR87_RS16900 0.39 +0.8 148,388 - ABZR87_RS16900 0.39 +0.2 148,391 + ABZR87_RS16900 0.39 -4.8 148,391 + ABZR87_RS16900 0.39 -3.3 148,391 + ABZR87_RS16900 0.39 -1.2 148,391 + ABZR87_RS16900 0.39 -4.4 148,391 + ABZR87_RS16900 0.39 +0.3 148,391 + ABZR87_RS16900 0.39 +4.4 148,391 + ABZR87_RS16900 0.39 +0.4 148,392 - ABZR87_RS16900 0.39 +1.1 148,392 - ABZR87_RS16900 0.39 -0.6 148,578 - ABZR87_RS16900 0.48 -0.7 148,626 - ABZR87_RS16900 0.50 +0.1 148,665 - ABZR87_RS16900 0.52 -0.7 148,772 + ABZR87_RS16900 0.57 +1.2 148,772 + ABZR87_RS16900 0.57 -0.4 148,773 - ABZR87_RS16900 0.57 -0.0 149,127 + ABZR87_RS16900 0.73 +0.8 149,127 + ABZR87_RS16900 0.73 +0.0 149,128 - ABZR87_RS16900 0.73 -1.3 149,128 - ABZR87_RS16900 0.73 -1.1 149,410 + ABZR87_RS16900 0.86 +1.1 149,410 + ABZR87_RS16900 0.86 -0.7 149,410 + ABZR87_RS16900 0.86 +0.5 149,410 + ABZR87_RS16900 0.86 +3.4 149,410 + ABZR87_RS16900 0.86 +0.5 149,410 + ABZR87_RS16900 0.86 +2.0 149,410 + ABZR87_RS16900 0.86 +0.2 149,410 + ABZR87_RS16900 0.86 +0.3 149,410 + ABZR87_RS16900 0.86 +1.7 149,411 - ABZR87_RS16900 0.86 -1.2 149,411 - ABZR87_RS16900 0.86 +0.6 149,423 + ABZR87_RS16900 0.87 +2.6 149,423 + ABZR87_RS16900 0.87 +0.4 149,424 - ABZR87_RS16900 0.87 -3.0 149,624 + -1.5 149,625 - -1.0 149,793 + ABZR87_RS16905 0.10 -3.3 149,922 + ABZR87_RS16905 0.30 -2.7 149,922 + ABZR87_RS16905 0.30 +0.7 150,102 + ABZR87_RS16905 0.59 -1.0 150,102 + ABZR87_RS16905 0.59 -0.2 150,103 - ABZR87_RS16905 0.59 +0.7 150,103 - ABZR87_RS16905 0.59 +0.9 150,159 + ABZR87_RS16905 0.68 +0.9 150,160 - ABZR87_RS16905 0.68 -1.0 150,160 - ABZR87_RS16905 0.68 -1.6 150,160 - ABZR87_RS16905 0.68 +1.3 150,160 - ABZR87_RS16905 0.68 -2.4 150,411 + -2.0 150,411 + +1.2 150,412 + -0.5 150,458 + -2.8 150,458 + +0.7 150,458 + -3.2 150,459 - -0.8 150,473 + +0.5 150,474 - -2.8 150,566 + ABZR87_RS16910 0.18 -0.6 150,567 - ABZR87_RS16910 0.18 +0.7 150,567 - ABZR87_RS16910 0.18 -0.2
Or see this region's nucleotide sequence