Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16885 and ABZR87_RS16890 are separated by 269 nucleotides ABZR87_RS16890 and ABZR87_RS16895 are separated by 90 nucleotides
ABZR87_RS16885: ABZR87_RS16885 - hypothetical protein, at 143,062 to 143,607
_RS16885
ABZR87_RS16890: ABZR87_RS16890 - LamG-like jellyroll fold domain-containing protein, at 143,877 to 146,084
_RS16890
ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251
_RS16895
Position (kb) 143
144
145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 142.890 kb on + strand at 142.894 kb on + strand at 142.894 kb on + strand at 142.894 kb on + strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.927 kb on + strand at 142.927 kb on + strand at 142.927 kb on + strand at 142.927 kb on + strand at 142.928 kb on - strand at 143.246 kb on + strand, within ABZR87_RS16885 at 143.247 kb on - strand, within ABZR87_RS16885 at 143.507 kb on - strand, within ABZR87_RS16885 at 143.731 kb on + strand at 143.747 kb on + strand at 143.747 kb on + strand at 143.748 kb on - strand at 143.748 kb on - strand at 143.762 kb on + strand at 143.762 kb on + strand at 143.763 kb on - strand at 143.763 kb on - strand at 143.763 kb on - strand at 143.763 kb on - strand at 143.764 kb on + strand at 143.764 kb on + strand at 143.764 kb on + strand at 143.783 kb on + strand at 143.783 kb on + strand at 143.783 kb on + strand at 143.783 kb on + strand at 143.784 kb on - strand at 143.784 kb on - strand at 143.827 kb on + strand at 143.839 kb on + strand at 143.840 kb on - strand at 143.840 kb on - strand at 143.840 kb on - strand at 143.840 kb on - strand at 144.198 kb on + strand, within ABZR87_RS16890 at 144.198 kb on + strand, within ABZR87_RS16890 at 144.220 kb on - strand, within ABZR87_RS16890 at 144.228 kb on + strand, within ABZR87_RS16890 at 144.229 kb on - strand, within ABZR87_RS16890 at 144.260 kb on - strand, within ABZR87_RS16890 at 144.260 kb on - strand, within ABZR87_RS16890 at 144.297 kb on + strand, within ABZR87_RS16890 at 144.298 kb on - strand, within ABZR87_RS16890 at 144.415 kb on + strand, within ABZR87_RS16890 at 144.415 kb on + strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.455 kb on + strand, within ABZR87_RS16890 at 144.456 kb on - strand, within ABZR87_RS16890 at 144.456 kb on - strand, within ABZR87_RS16890 at 144.459 kb on + strand, within ABZR87_RS16890 at 144.459 kb on + strand, within ABZR87_RS16890 at 144.459 kb on + strand, within ABZR87_RS16890 at 144.654 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.658 kb on - strand, within ABZR87_RS16890 at 144.658 kb on - strand, within ABZR87_RS16890 at 144.720 kb on + strand, within ABZR87_RS16890 at 144.721 kb on - strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.886 kb on - strand, within ABZR87_RS16890 at 144.927 kb on + strand, within ABZR87_RS16890 at 144.927 kb on + strand, within ABZR87_RS16890 at 144.927 kb on + strand, within ABZR87_RS16890 at 144.928 kb on - strand, within ABZR87_RS16890 at 144.939 kb on + strand, within ABZR87_RS16890 at 144.939 kb on + strand, within ABZR87_RS16890 at 145.035 kb on + strand, within ABZR87_RS16890 at 145.035 kb on + strand, within ABZR87_RS16890 at 145.035 kb on + strand, within ABZR87_RS16890 at 145.036 kb on - strand, within ABZR87_RS16890 at 145.044 kb on + strand, within ABZR87_RS16890 at 145.045 kb on - strand, within ABZR87_RS16890 at 145.045 kb on - strand, within ABZR87_RS16890 at 145.111 kb on - strand, within ABZR87_RS16890 at 145.132 kb on - strand, within ABZR87_RS16890 at 145.167 kb on + strand, within ABZR87_RS16890 at 145.167 kb on + strand, within ABZR87_RS16890 at 145.168 kb on - strand, within ABZR87_RS16890 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.374 kb on + strand, within ABZR87_RS16890 at 145.375 kb on - strand, within ABZR87_RS16890 at 145.680 kb on + strand, within ABZR87_RS16890 at 145.886 kb on + strand at 145.886 kb on + strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.899 kb on + strand at 145.899 kb on + strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 146.484 kb on - strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.580 kb on - strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.696 kb on - strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.843 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.869 kb on + strand, within ABZR87_RS16895 at 146.891 kb on + strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 142,890 + -3.0 142,894 + -3.5 142,894 + +1.7 142,894 + -1.6 142,895 - +0.2 142,895 - +1.4 142,895 - -3.6 142,895 - +0.9 142,895 - -2.4 142,895 - +1.3 142,895 - -3.0 142,895 - -1.2 142,895 - -2.6 142,895 - +0.5 142,927 + -1.0 142,927 + +0.5 142,927 + +2.4 142,927 + +0.3 142,928 - -3.0 143,246 + ABZR87_RS16885 0.34 +0.2 143,247 - ABZR87_RS16885 0.34 +1.0 143,507 - ABZR87_RS16885 0.82 +3.2 143,731 + +1.0 143,747 + -3.3 143,747 + -2.2 143,748 - -0.5 143,748 - -3.3 143,762 + +1.1 143,762 + -2.8 143,763 - -2.3 143,763 - -0.3 143,763 - +0.2 143,763 - -0.2 143,764 + -1.1 143,764 + -1.5 143,764 + -2.8 143,783 + -1.6 143,783 + +0.2 143,783 + +1.6 143,783 + -0.1 143,784 - -1.1 143,784 - +1.2 143,827 + -0.4 143,839 + -2.5 143,840 - +1.7 143,840 - +0.2 143,840 - +1.5 143,840 - -1.6 144,198 + ABZR87_RS16890 0.15 -0.2 144,198 + ABZR87_RS16890 0.15 -3.7 144,220 - ABZR87_RS16890 0.16 -3.6 144,228 + ABZR87_RS16890 0.16 -4.0 144,229 - ABZR87_RS16890 0.16 +1.5 144,260 - ABZR87_RS16890 0.17 +0.3 144,260 - ABZR87_RS16890 0.17 -0.8 144,297 + ABZR87_RS16890 0.19 -3.5 144,298 - ABZR87_RS16890 0.19 +0.0 144,415 + ABZR87_RS16890 0.24 -2.3 144,415 + ABZR87_RS16890 0.24 +0.4 144,416 - ABZR87_RS16890 0.24 -0.3 144,416 - ABZR87_RS16890 0.24 +0.3 144,416 - ABZR87_RS16890 0.24 -0.9 144,416 - ABZR87_RS16890 0.24 +0.2 144,416 - ABZR87_RS16890 0.24 +1.2 144,455 + ABZR87_RS16890 0.26 -0.2 144,456 - ABZR87_RS16890 0.26 -0.1 144,456 - ABZR87_RS16890 0.26 +1.0 144,459 + ABZR87_RS16890 0.26 +2.8 144,459 + ABZR87_RS16890 0.26 +0.3 144,459 + ABZR87_RS16890 0.26 +1.2 144,654 + ABZR87_RS16890 0.35 +1.4 144,657 + ABZR87_RS16890 0.35 +0.9 144,657 + ABZR87_RS16890 0.35 -0.4 144,657 + ABZR87_RS16890 0.35 -1.5 144,657 + ABZR87_RS16890 0.35 -1.8 144,658 - ABZR87_RS16890 0.35 -1.4 144,658 - ABZR87_RS16890 0.35 -0.8 144,720 + ABZR87_RS16890 0.38 -0.6 144,721 - ABZR87_RS16890 0.38 -1.2 144,846 + ABZR87_RS16890 0.44 -3.0 144,846 + ABZR87_RS16890 0.44 +0.7 144,846 + ABZR87_RS16890 0.44 +0.7 144,846 + ABZR87_RS16890 0.44 +1.5 144,885 + ABZR87_RS16890 0.46 +1.6 144,885 + ABZR87_RS16890 0.46 -3.5 144,885 + ABZR87_RS16890 0.46 +1.4 144,885 + ABZR87_RS16890 0.46 +1.7 144,886 - ABZR87_RS16890 0.46 -1.4 144,927 + ABZR87_RS16890 0.48 +0.0 144,927 + ABZR87_RS16890 0.48 +0.9 144,927 + ABZR87_RS16890 0.48 +0.8 144,928 - ABZR87_RS16890 0.48 -1.3 144,939 + ABZR87_RS16890 0.48 +1.7 144,939 + ABZR87_RS16890 0.48 +0.8 145,035 + ABZR87_RS16890 0.52 -2.0 145,035 + ABZR87_RS16890 0.52 -1.8 145,035 + ABZR87_RS16890 0.52 +0.8 145,036 - ABZR87_RS16890 0.52 +0.4 145,044 + ABZR87_RS16890 0.53 -0.5 145,045 - ABZR87_RS16890 0.53 +1.3 145,045 - ABZR87_RS16890 0.53 +1.6 145,111 - ABZR87_RS16890 0.56 -1.0 145,132 - ABZR87_RS16890 0.57 +3.5 145,167 + ABZR87_RS16890 0.58 -3.2 145,167 + ABZR87_RS16890 0.58 -2.0 145,168 - ABZR87_RS16890 0.58 -2.7 145,206 + ABZR87_RS16890 0.60 -2.2 145,206 + ABZR87_RS16890 0.60 +0.7 145,263 + ABZR87_RS16890 0.63 +1.4 145,263 + ABZR87_RS16890 0.63 +0.1 145,341 + ABZR87_RS16890 0.66 +0.5 145,341 + ABZR87_RS16890 0.66 +2.5 145,341 + ABZR87_RS16890 0.66 -0.0 145,349 + ABZR87_RS16890 0.67 +1.2 145,349 + ABZR87_RS16890 0.67 -0.6 145,350 - ABZR87_RS16890 0.67 -0.5 145,350 - ABZR87_RS16890 0.67 +0.8 145,350 - ABZR87_RS16890 0.67 -3.3 145,374 + ABZR87_RS16890 0.68 -3.6 145,375 - ABZR87_RS16890 0.68 -0.5 145,680 + ABZR87_RS16890 0.82 -1.6 145,886 + +1.8 145,886 + -0.3 145,887 - -0.6 145,887 - -2.4 145,887 - -0.1 145,899 + -1.0 145,899 + -3.2 145,900 - +1.1 145,900 - +3.4 145,900 - +1.7 145,900 - +0.2 146,484 - ABZR87_RS16895 0.29 -2.1 146,579 + ABZR87_RS16895 0.38 -0.5 146,579 + ABZR87_RS16895 0.38 -3.9 146,580 - ABZR87_RS16895 0.38 -1.5 146,644 + ABZR87_RS16895 0.44 -0.1 146,644 + ABZR87_RS16895 0.44 -2.2 146,696 - ABZR87_RS16895 0.48 +2.2 146,704 + ABZR87_RS16895 0.49 +1.3 146,704 + ABZR87_RS16895 0.49 -2.8 146,704 + ABZR87_RS16895 0.49 -3.5 146,704 + ABZR87_RS16895 0.49 -4.2 146,705 - ABZR87_RS16895 0.49 +2.4 146,705 - ABZR87_RS16895 0.49 -4.4 146,705 - ABZR87_RS16895 0.49 -1.1 146,705 - ABZR87_RS16895 0.49 -0.1 146,843 + ABZR87_RS16895 0.62 -0.7 146,845 + ABZR87_RS16895 0.62 +0.8 146,845 + ABZR87_RS16895 0.62 -0.0 146,845 + ABZR87_RS16895 0.62 -3.2 146,845 + ABZR87_RS16895 0.62 -3.2 146,845 + ABZR87_RS16895 0.62 -2.9 146,846 - ABZR87_RS16895 0.62 +0.8 146,846 - ABZR87_RS16895 0.62 +1.2 146,846 - ABZR87_RS16895 0.62 +0.1 146,869 + ABZR87_RS16895 0.64 +0.3 146,891 + ABZR87_RS16895 0.66 -2.7 146,892 - ABZR87_RS16895 0.67 +0.8 146,892 - ABZR87_RS16895 0.67 -2.9 146,892 - ABZR87_RS16895 0.67 -2.1 146,892 - ABZR87_RS16895 0.67 -0.9 146,905 + ABZR87_RS16895 0.68 -0.5 146,905 + ABZR87_RS16895 0.68 -0.4 146,906 - ABZR87_RS16895 0.68 -3.6 146,906 - ABZR87_RS16895 0.68 +1.2 146,906 - ABZR87_RS16895 0.68 +0.6
Or see this region's nucleotide sequence