Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16800

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16790 and ABZR87_RS16795 are separated by 141 nucleotidesABZR87_RS16795 and ABZR87_RS16800 are separated by 171 nucleotidesABZR87_RS16800 and ABZR87_RS16805 are separated by 147 nucleotides ABZR87_RS16790: ABZR87_RS16790 - DUF4019 domain-containing protein, at 124,346 to 124,819 _RS16790 ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440 _RS16795 ABZR87_RS16800: ABZR87_RS16800 - RidA family protein, at 125,612 to 126,010 _RS16800 ABZR87_RS16805: ABZR87_RS16805 - LysR family transcriptional regulator, at 126,158 to 127,072 _RS16805 Position (kb) 125 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.761 kb on - strand, within ABZR87_RS16790at 124.772 kb on + strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.948 kb on - strandat 125.319 kb on + strand, within ABZR87_RS16795at 125.320 kb on - strand, within ABZR87_RS16795at 125.377 kb on - strand, within ABZR87_RS16795at 125.409 kb on + strandat 125.409 kb on + strandat 125.409 kb on + strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.568 kb on + strandat 125.569 kb on - strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.596 kb on - strandat 125.596 kb on - strandat 125.665 kb on - strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.950 kb on - strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.965 kb on - strand, within ABZR87_RS16800at 125.965 kb on - strand, within ABZR87_RS16800at 126.071 kb on + strandat 126.071 kb on + strandat 126.071 kb on + strandat 126.071 kb on + strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.092 kb on + strandat 126.093 kb on - strandat 126.093 kb on - strandat 126.107 kb on + strandat 126.107 kb on + strandat 126.108 kb on - strandat 126.214 kb on + strandat 126.214 kb on + strandat 126.215 kb on - strandat 126.215 kb on - strandat 126.244 kb on + strandat 126.244 kb on + strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.350 kb on + strand, within ABZR87_RS16805at 126.350 kb on + strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.397 kb on + strand, within ABZR87_RS16805at 126.397 kb on + strand, within ABZR87_RS16805at 126.398 kb on - strand, within ABZR87_RS16805at 126.398 kb on - strand, within ABZR87_RS16805at 126.583 kb on - strand, within ABZR87_RS16805at 126.615 kb on + strand, within ABZR87_RS16805at 126.615 kb on + strand, within ABZR87_RS16805at 126.653 kb on + strand, within ABZR87_RS16805at 126.653 kb on + strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.668 kb on + strand, within ABZR87_RS16805at 126.669 kb on - strand, within ABZR87_RS16805at 126.815 kb on + strand, within ABZR87_RS16805at 126.815 kb on + strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.845 kb on + strand, within ABZR87_RS16805at 126.845 kb on + strand, within ABZR87_RS16805at 126.846 kb on - strand, within ABZR87_RS16805at 126.846 kb on - strand, within ABZR87_RS16805at 126.893 kb on + strand, within ABZR87_RS16805at 126.893 kb on + strand, within ABZR87_RS16805at 126.893 kb on + strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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124,638 - ABZR87_RS16790 0.62 -0.1
124,638 - ABZR87_RS16790 0.62 +1.7
124,638 - ABZR87_RS16790 0.62 -0.2
124,638 - ABZR87_RS16790 0.62 +0.5
124,638 - ABZR87_RS16790 0.62 +1.6
124,638 - ABZR87_RS16790 0.62 -3.5
124,639 + ABZR87_RS16790 0.62 +0.6
124,639 + ABZR87_RS16790 0.62 +1.4
124,639 + ABZR87_RS16790 0.62 +5.8
124,640 - ABZR87_RS16790 0.62 -0.5
124,640 - ABZR87_RS16790 0.62 -0.2
124,640 - ABZR87_RS16790 0.62 +1.3
124,640 - ABZR87_RS16790 0.62 +1.7
124,640 - ABZR87_RS16790 0.62 +1.6
124,640 - ABZR87_RS16790 0.62 +2.2
124,671 - ABZR87_RS16790 0.69 -0.6
124,671 - ABZR87_RS16790 0.69 +0.6
124,671 - ABZR87_RS16790 0.69 -0.8
124,760 + ABZR87_RS16790 0.87 -0.2
124,760 + ABZR87_RS16790 0.87 +1.7
124,760 + ABZR87_RS16790 0.87 -0.8
124,760 + ABZR87_RS16790 0.87 -4.0
124,761 - ABZR87_RS16790 0.88 +1.2
124,772 + +1.0
124,773 - +1.4
124,773 - +2.0
124,773 - -0.5
124,773 - -1.5
124,948 - +1.6
125,319 + ABZR87_RS16795 0.75 +0.4
125,320 - ABZR87_RS16795 0.75 -1.0
125,377 - ABZR87_RS16795 0.87 +1.8
125,409 + -2.0
125,409 + -0.8
125,409 + +1.4
125,410 - +0.1
125,410 - -0.1
125,410 - -2.9
125,568 + -4.1
125,569 - -0.2
125,595 + -0.4
125,595 + -3.4
125,595 + -0.8
125,596 - +0.4
125,596 - -1.7
125,665 - ABZR87_RS16800 0.13 -3.7
125,770 + ABZR87_RS16800 0.40 +0.4
125,770 + ABZR87_RS16800 0.40 +0.2
125,950 - ABZR87_RS16800 0.85 -0.4
125,964 + ABZR87_RS16800 0.88 +0.4
125,964 + ABZR87_RS16800 0.88 +0.3
125,964 + ABZR87_RS16800 0.88 -1.4
125,964 + ABZR87_RS16800 0.88 +0.7
125,965 - ABZR87_RS16800 0.88 -0.7
125,965 - ABZR87_RS16800 0.88 +0.5
126,071 + -2.7
126,071 + -2.2
126,071 + +0.9
126,071 + +2.0
126,072 - -1.8
126,072 - +1.3
126,072 - +0.9
126,072 - -3.3
126,072 - -3.1
126,072 - -0.6
126,072 - +1.0
126,072 - -3.2
126,072 - -1.9
126,092 + -0.8
126,093 - +0.3
126,093 - +0.7
126,107 + -2.9
126,107 + -0.8
126,108 - +0.2
126,214 + -0.6
126,214 + -1.3
126,215 - +0.3
126,215 - +0.7
126,244 + -0.3
126,244 + -1.0
126,245 - -1.8
126,245 - -2.1
126,245 - -1.6
126,245 - +0.3
126,350 + ABZR87_RS16805 0.21 +1.8
126,350 + ABZR87_RS16805 0.21 -1.0
126,351 - ABZR87_RS16805 0.21 +0.5
126,351 - ABZR87_RS16805 0.21 +1.4
126,351 - ABZR87_RS16805 0.21 -3.5
126,351 - ABZR87_RS16805 0.21 +0.3
126,353 + ABZR87_RS16805 0.21 -3.2
126,353 + ABZR87_RS16805 0.21 -0.9
126,353 + ABZR87_RS16805 0.21 +1.5
126,353 + ABZR87_RS16805 0.21 +0.2
126,353 + ABZR87_RS16805 0.21 -2.0
126,353 + ABZR87_RS16805 0.21 -3.0
126,354 - ABZR87_RS16805 0.21 +1.5
126,354 - ABZR87_RS16805 0.21 -4.0
126,354 - ABZR87_RS16805 0.21 -1.4
126,354 - ABZR87_RS16805 0.21 -0.2
126,397 + ABZR87_RS16805 0.26 -0.7
126,397 + ABZR87_RS16805 0.26 -0.3
126,398 - ABZR87_RS16805 0.26 +0.7
126,398 - ABZR87_RS16805 0.26 -0.4
126,583 - ABZR87_RS16805 0.46 -1.2
126,615 + ABZR87_RS16805 0.50 +0.6
126,615 + ABZR87_RS16805 0.50 +0.2
126,653 + ABZR87_RS16805 0.54 -1.8
126,653 + ABZR87_RS16805 0.54 -0.3
126,654 - ABZR87_RS16805 0.54 -0.7
126,654 - ABZR87_RS16805 0.54 -0.4
126,654 - ABZR87_RS16805 0.54 -4.1
126,654 - ABZR87_RS16805 0.54 -4.1
126,668 + ABZR87_RS16805 0.56 +0.2
126,669 - ABZR87_RS16805 0.56 +1.0
126,815 + ABZR87_RS16805 0.72 +0.2
126,815 + ABZR87_RS16805 0.72 -3.7
126,816 - ABZR87_RS16805 0.72 -1.4
126,816 - ABZR87_RS16805 0.72 +1.5
126,816 - ABZR87_RS16805 0.72 +1.4
126,816 - ABZR87_RS16805 0.72 -1.0
126,845 + ABZR87_RS16805 0.75 +1.5
126,845 + ABZR87_RS16805 0.75 -0.6
126,846 - ABZR87_RS16805 0.75 +2.0
126,846 - ABZR87_RS16805 0.75 -2.0
126,893 + ABZR87_RS16805 0.80 -1.7
126,893 + ABZR87_RS16805 0.80 -1.6
126,893 + ABZR87_RS16805 0.80 +1.1
126,894 - ABZR87_RS16805 0.80 +0.1
126,894 - ABZR87_RS16805 0.80 -0.3
126,894 - ABZR87_RS16805 0.80 +0.8
126,894 - ABZR87_RS16805 0.80 -0.6
126,894 - ABZR87_RS16805 0.80 +0.3
126,894 - ABZR87_RS16805 0.80 -0.3
126,971 + ABZR87_RS16805 0.89 -0.7
126,971 + ABZR87_RS16805 0.89 -0.3
126,971 + ABZR87_RS16805 0.89 -0.6
126,971 + ABZR87_RS16805 0.89 -0.7
126,971 + ABZR87_RS16805 0.89 -0.2
126,972 - ABZR87_RS16805 0.89 -0.6
126,972 - ABZR87_RS16805 0.89 -0.3
126,972 - ABZR87_RS16805 0.89 -1.3
126,972 - ABZR87_RS16805 0.89 +0.7
126,972 - ABZR87_RS16805 0.89 -0.4
126,972 - ABZR87_RS16805 0.89 +1.2
126,972 - ABZR87_RS16805 0.89 -3.5
126,972 - ABZR87_RS16805 0.89 -2.2
126,972 - ABZR87_RS16805 0.89 -3.3

Or see this region's nucleotide sequence