Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16585

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16575 and ABZR87_RS16580 are separated by 2 nucleotidesABZR87_RS16580 and ABZR87_RS16585 overlap by 17 nucleotidesABZR87_RS16585 and ABZR87_RS16590 are separated by 63 nucleotides ABZR87_RS16575: ABZR87_RS16575 - ABC transporter ATP-binding protein, at 67,516 to 68,268 _RS16575 ABZR87_RS16580: ABZR87_RS16580 - ABC transporter ATP-binding protein, at 68,271 to 69,125 _RS16580 ABZR87_RS16585: ABZR87_RS16585 - OsmC family protein, at 69,109 to 69,699 _RS16585 ABZR87_RS16590: ABZR87_RS16590 - ABC transporter permease, at 69,763 to 71,601 _RS16590 Position (kb) 69 70Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 68.208 kb on - strandat 68.338 kb on + strandat 68.338 kb on + strandat 68.338 kb on + strandat 68.339 kb on - strandat 68.620 kb on + strand, within ABZR87_RS16580at 68.620 kb on + strand, within ABZR87_RS16580at 68.632 kb on + strand, within ABZR87_RS16580at 68.632 kb on + strand, within ABZR87_RS16580at 68.632 kb on + strand, within ABZR87_RS16580at 68.633 kb on - strand, within ABZR87_RS16580at 69.046 kb on - strandat 69.243 kb on + strand, within ABZR87_RS16585at 69.329 kb on + strand, within ABZR87_RS16585at 69.330 kb on - strand, within ABZR87_RS16585at 69.330 kb on - strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.445 kb on - strand, within ABZR87_RS16585at 69.445 kb on - strand, within ABZR87_RS16585at 69.445 kb on - strand, within ABZR87_RS16585at 69.506 kb on + strand, within ABZR87_RS16585at 69.507 kb on - strand, within ABZR87_RS16585at 69.559 kb on + strand, within ABZR87_RS16585at 69.656 kb on - strandat 69.681 kb on - strandat 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.993 kb on - strand, within ABZR87_RS16590at 69.993 kb on - strand, within ABZR87_RS16590at 69.993 kb on - strand, within ABZR87_RS16590at 70.061 kb on + strand, within ABZR87_RS16590at 70.062 kb on - strand, within ABZR87_RS16590at 70.199 kb on + strand, within ABZR87_RS16590at 70.199 kb on + strand, within ABZR87_RS16590at 70.199 kb on + strand, within ABZR87_RS16590at 70.200 kb on - strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.562 kb on + strand, within ABZR87_RS16590at 70.562 kb on + strand, within ABZR87_RS16590at 70.562 kb on + strand, within ABZR87_RS16590at 70.582 kb on + strand, within ABZR87_RS16590at 70.582 kb on + strand, within ABZR87_RS16590at 70.595 kb on + strand, within ABZR87_RS16590at 70.595 kb on + strand, within ABZR87_RS16590at 70.595 kb on + strand, within ABZR87_RS16590at 70.596 kb on - strand, within ABZR87_RS16590at 70.596 kb on - strand, within ABZR87_RS16590

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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68,208 - -0.2
68,338 + -1.1
68,338 + -0.4
68,338 + +0.7
68,339 - +2.4
68,620 + ABZR87_RS16580 0.41 +0.1
68,620 + ABZR87_RS16580 0.41 -2.0
68,632 + ABZR87_RS16580 0.42 +0.8
68,632 + ABZR87_RS16580 0.42 -0.3
68,632 + ABZR87_RS16580 0.42 -2.8
68,633 - ABZR87_RS16580 0.42 +1.2
69,046 - -3.6
69,243 + ABZR87_RS16585 0.23 -1.4
69,329 + ABZR87_RS16585 0.37 +0.4
69,330 - ABZR87_RS16585 0.37 +0.6
69,330 - ABZR87_RS16585 0.37 -0.6
69,444 + ABZR87_RS16585 0.57 -3.5
69,444 + ABZR87_RS16585 0.57 -3.5
69,444 + ABZR87_RS16585 0.57 +0.3
69,444 + ABZR87_RS16585 0.57 -2.6
69,445 - ABZR87_RS16585 0.57 +0.4
69,445 - ABZR87_RS16585 0.57 +1.6
69,445 - ABZR87_RS16585 0.57 +1.1
69,506 + ABZR87_RS16585 0.67 -1.7
69,507 - ABZR87_RS16585 0.67 -0.4
69,559 + ABZR87_RS16585 0.76 +0.2
69,656 - -0.9
69,681 - -2.5
69,986 + ABZR87_RS16590 0.12 -1.5
69,986 + ABZR87_RS16590 0.12 -3.2
69,986 + ABZR87_RS16590 0.12 -3.7
69,986 + ABZR87_RS16590 0.12 -1.4
69,986 + ABZR87_RS16590 0.12 -0.2
69,987 - ABZR87_RS16590 0.12 +1.9
69,987 - ABZR87_RS16590 0.12 +2.5
69,987 - ABZR87_RS16590 0.12 +0.3
69,987 - ABZR87_RS16590 0.12 +1.4
69,993 - ABZR87_RS16590 0.13 +1.0
69,993 - ABZR87_RS16590 0.13 -0.9
69,993 - ABZR87_RS16590 0.13 -1.3
70,061 + ABZR87_RS16590 0.16 +1.1
70,062 - ABZR87_RS16590 0.16 -0.4
70,199 + ABZR87_RS16590 0.24 -2.5
70,199 + ABZR87_RS16590 0.24 -4.2
70,199 + ABZR87_RS16590 0.24 -0.3
70,200 - ABZR87_RS16590 0.24 -1.2
70,346 + ABZR87_RS16590 0.32 +1.1
70,346 + ABZR87_RS16590 0.32 -1.0
70,346 + ABZR87_RS16590 0.32 +0.4
70,346 + ABZR87_RS16590 0.32 -2.0
70,346 + ABZR87_RS16590 0.32 +0.7
70,346 + ABZR87_RS16590 0.32 +1.2
70,346 + ABZR87_RS16590 0.32 -0.6
70,346 + ABZR87_RS16590 0.32 -3.0
70,347 - ABZR87_RS16590 0.32 -3.5
70,347 - ABZR87_RS16590 0.32 -0.4
70,347 - ABZR87_RS16590 0.32 -0.3
70,347 - ABZR87_RS16590 0.32 +1.9
70,347 - ABZR87_RS16590 0.32 +0.7
70,472 + ABZR87_RS16590 0.39 -0.3
70,472 + ABZR87_RS16590 0.39 -0.4
70,472 + ABZR87_RS16590 0.39 -2.5
70,472 + ABZR87_RS16590 0.39 -2.0
70,562 + ABZR87_RS16590 0.43 -2.9
70,562 + ABZR87_RS16590 0.43 +0.2
70,562 + ABZR87_RS16590 0.43 -1.3
70,582 + ABZR87_RS16590 0.45 +1.2
70,582 + ABZR87_RS16590 0.45 +0.7
70,595 + ABZR87_RS16590 0.45 -0.9
70,595 + ABZR87_RS16590 0.45 -0.8
70,595 + ABZR87_RS16590 0.45 -3.7
70,596 - ABZR87_RS16590 0.45 +0.6
70,596 - ABZR87_RS16590 0.45 -2.8

Or see this region's nucleotide sequence