Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10430

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 1; outgrowth in LB
2,209,494	+		ABZR87_RS10425	0.70	+1.7
2,210,076	+				-0.6
2,210,076	+				+1.7
2,210,077	-				-1.7
2,210,077	-				-0.6
2,210,309	+				-0.4
2,210,309	+				-0.6
2,210,309	+				+0.2
2,210,311	+				+1.8
2,210,312	-				-1.2
2,210,312	-				+1.1
2,210,312	-				-0.4
2,210,329	+				+1.4
2,210,329	+				+0.8
2,210,330	-				+1.6
2,210,377	-				-4.2
2,210,377	-				-0.2
2,210,377	-				-2.3
2,210,377	-				+0.3
2,210,475	+				+0.4
2,210,475	+				+0.5
2,210,476	-				-2.9
2,210,584	-		ABZR87_RS10430	0.15	+1.1
2,210,733	+		ABZR87_RS10430	0.25	-1.5
2,210,733	+		ABZR87_RS10430	0.25	+1.2
2,210,733	+		ABZR87_RS10430	0.25	-0.6
2,210,734	-		ABZR87_RS10430	0.25	-3.3
2,210,734	-		ABZR87_RS10430	0.25	-1.0
2,210,734	-		ABZR87_RS10430	0.25	-1.4
2,210,734	-		ABZR87_RS10430	0.25	+0.6
2,210,784	+		ABZR87_RS10430	0.28	-1.7
2,210,784	+		ABZR87_RS10430	0.28	+0.8
2,210,785	-		ABZR87_RS10430	0.29	+0.9
2,210,785	-		ABZR87_RS10430	0.29	+1.7
2,210,841	+		ABZR87_RS10430	0.32	+1.7
2,210,841	+		ABZR87_RS10430	0.32	+0.7
2,210,841	+		ABZR87_RS10430	0.32	+1.2
2,210,841	+		ABZR87_RS10430	0.32	+1.8
2,210,842	-		ABZR87_RS10430	0.32	-3.2
2,210,842	-		ABZR87_RS10430	0.32	+0.4
2,210,842	-		ABZR87_RS10430	0.32	+0.3
2,210,893	-		ABZR87_RS10430	0.36	-1.5
2,210,934	+		ABZR87_RS10430	0.39	-3.0
2,210,934	+		ABZR87_RS10430	0.39	+1.1
2,210,934	+		ABZR87_RS10430	0.39	-2.2
2,210,934	+		ABZR87_RS10430	0.39	-2.2
2,210,935	-		ABZR87_RS10430	0.39	+1.9
2,210,935	-		ABZR87_RS10430	0.39	+2.3
2,210,935	-		ABZR87_RS10430	0.39	-0.8
2,211,102	+		ABZR87_RS10430	0.50	+1.3
2,211,102	+		ABZR87_RS10430	0.50	+2.3
2,211,102	+		ABZR87_RS10430	0.50	+0.4
2,211,102	+		ABZR87_RS10430	0.50	+0.5
2,211,102	+		ABZR87_RS10430	0.50	-2.8
2,211,102	+		ABZR87_RS10430	0.50	-3.1
2,211,103	-		ABZR87_RS10430	0.50	-0.6
2,211,103	-		ABZR87_RS10430	0.50	-3.2
2,211,103	-		ABZR87_RS10430	0.50	-2.8
2,211,198	+		ABZR87_RS10430	0.56	-2.3
2,211,198	+		ABZR87_RS10430	0.56	-0.9
2,211,198	+		ABZR87_RS10430	0.56	+0.4
2,211,198	+		ABZR87_RS10430	0.56	+0.4
2,211,198	+		ABZR87_RS10430	0.56	-2.9
2,211,198	+		ABZR87_RS10430	0.56	+1.0
2,211,199	-		ABZR87_RS10430	0.56	-0.1
2,211,199	-		ABZR87_RS10430	0.56	-3.1
2,211,199	-		ABZR87_RS10430	0.56	-0.8
2,211,199	-		ABZR87_RS10430	0.56	-1.0
2,211,199	-		ABZR87_RS10430	0.56	-2.3
2,211,240	+		ABZR87_RS10430	0.59	-0.2
2,211,324	+		ABZR87_RS10430	0.65	-0.6
2,211,325	-		ABZR87_RS10430	0.65	-1.4
2,211,390	+		ABZR87_RS10430	0.69	+1.7
2,211,391	-		ABZR87_RS10430	0.69	-3.0
2,211,391	-		ABZR87_RS10430	0.69	+1.8
2,211,391	-		ABZR87_RS10430	0.69	-1.1
2,211,396	+		ABZR87_RS10430	0.70	+1.1
2,211,396	+		ABZR87_RS10430	0.70	-1.8
2,211,397	-		ABZR87_RS10430	0.70	-0.9
2,211,397	-		ABZR87_RS10430	0.70	-0.2
2,211,397	-		ABZR87_RS10430	0.70	+1.4
2,211,397	-		ABZR87_RS10430	0.70	-3.7
2,211,397	-		ABZR87_RS10430	0.70	-3.5
2,211,397	-		ABZR87_RS10430	0.70	-0.2
2,211,421	-		ABZR87_RS10430	0.71	+2.6
2,211,459	+		ABZR87_RS10430	0.74	+2.1
2,211,459	+		ABZR87_RS10430	0.74	+0.0
2,211,459	+		ABZR87_RS10430	0.74	+0.4
2,211,459	+		ABZR87_RS10430	0.74	-1.0
2,211,459	+		ABZR87_RS10430	0.74	-1.1
2,211,459	+		ABZR87_RS10430	0.74	+0.1
2,211,459	+		ABZR87_RS10430	0.74	+0.6
2,211,460	-		ABZR87_RS10430	0.74	+0.9
2,211,460	-		ABZR87_RS10430	0.74	-0.8
2,211,460	-		ABZR87_RS10430	0.74	-2.2
2,211,460	-		ABZR87_RS10430	0.74	-2.9
2,211,489	+		ABZR87_RS10430	0.76	-0.9
2,211,489	+		ABZR87_RS10430	0.76	-0.8
2,211,489	+		ABZR87_RS10430	0.76	+1.7
2,211,489	+		ABZR87_RS10430	0.76	+1.7
2,211,489	+		ABZR87_RS10430	0.76	+0.8
2,211,489	+		ABZR87_RS10430	0.76	-1.1
2,211,490	-		ABZR87_RS10430	0.76	-0.4
2,211,490	-		ABZR87_RS10430	0.76	-2.4
2,211,490	-		ABZR87_RS10430	0.76	-1.2
2,211,490	-		ABZR87_RS10430	0.76	+1.2
2,211,490	-		ABZR87_RS10430	0.76	+0.4
2,211,627	+		ABZR87_RS10430	0.85	-2.8
2,211,627	+		ABZR87_RS10430	0.85	-1.4
2,211,627	+		ABZR87_RS10430	0.85	+0.5
2,211,627	+		ABZR87_RS10430	0.85	-0.5
2,211,627	+		ABZR87_RS10430	0.85	-3.7
2,211,627	+		ABZR87_RS10430	0.85	-0.1
2,211,628	-		ABZR87_RS10430	0.85	-3.3
2,211,628	-		ABZR87_RS10430	0.85	-4.9
2,211,628	-		ABZR87_RS10430	0.85	-2.6
2,211,642	-		ABZR87_RS10430	0.86	+1.8
2,211,669	+		ABZR87_RS10430	0.88	+0.5
2,211,669	+		ABZR87_RS10430	0.88	-4.1
2,211,669	+		ABZR87_RS10430	0.88	+0.0
2,211,669	+		ABZR87_RS10430	0.88	+1.4
2,211,669	+		ABZR87_RS10430	0.88	+0.8
2,211,669	+		ABZR87_RS10430	0.88	-3.1
2,211,670	-		ABZR87_RS10430	0.88	-2.3
2,211,670	-		ABZR87_RS10430	0.88	-2.1
2,211,670	-		ABZR87_RS10430	0.88	+3.1
2,211,670	-		ABZR87_RS10430	0.88	-2.7
2,211,670	-		ABZR87_RS10430	0.88	-2.2
2,211,670	-		ABZR87_RS10430	0.88	+1.2
2,211,670	-		ABZR87_RS10430	0.88	-3.1
2,211,910	+				+1.4
2,211,910	+				+0.5
2,211,910	+				-2.0
2,211,911	-				-0.1
2,211,911	-				+0.9
2,211,911	-				+0.9
2,211,914	+				+1.1
2,211,914	+				-1.7
2,211,914	+				-3.0
2,211,914	+				+0.4
2,211,915	-				+1.5
2,211,915	-				-0.9
2,211,915	-				-1.9
2,211,915	-				+0.2
2,211,970	+				-0.2
2,212,015	+				-0.4
2,212,016	-				-1.2
2,212,080	+		ABZR87_RS10435	0.16	-1.3
2,212,115	-		ABZR87_RS10435	0.20	+0.8
2,212,522	+		ABZR87_RS10435	0.62	-3.3
2,212,522	+		ABZR87_RS10435	0.62	+1.4
2,212,522	+		ABZR87_RS10435	0.62	+0.5
2,212,522	+		ABZR87_RS10435	0.62	-3.5
2,212,568	-		ABZR87_RS10435	0.67	-0.8
2,212,579	+		ABZR87_RS10435	0.68	+2.4
2,212,579	+		ABZR87_RS10435	0.68	-1.1
2,212,580	-		ABZR87_RS10435	0.69	+1.4
2,212,594	-		ABZR87_RS10435	0.70	+0.1
2,212,753	+		ABZR87_RS10435	0.87	-0.6
2,212,770	+		ABZR87_RS10435	0.89	+0.6
2,212,771	-		ABZR87_RS10435	0.89	-0.2
2,212,771	-		ABZR87_RS10435	0.89	-0.3
2,212,771	-		ABZR87_RS10435	0.89	+2.3