Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09215

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS09205 and ABZR87_RS09210 are separated by 10 nucleotidesABZR87_RS09210 and ABZR87_RS09215 are separated by 136 nucleotidesABZR87_RS09215 and ABZR87_RS09220 are separated by 64 nucleotidesABZR87_RS09220 and ABZR87_RS09225 are separated by 41 nucleotides ABZR87_RS09205: ABZR87_RS09205 - ankyrin repeat domain-containing protein, at 1,948,195 to 1,948,989 _RS09205 ABZR87_RS09210: ABZR87_RS09210 - gamma-glutamylcyclotransferase, at 1,949,000 to 1,949,749 _RS09210 ABZR87_RS09215: ABZR87_RS09215 - tRNA-Cys, at 1,949,886 to 1,949,961 _RS09215 ABZR87_RS09220: ABZR87_RS09220 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,950,026 to 1,950,379 _RS09220 ABZR87_RS09225: ABZR87_RS09225 - YaeQ family protein, at 1,950,421 to 1,950,972 _RS09225 Position (kb) 1949 1950Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1949.013 kb on + strandat 1949.013 kb on + strandat 1949.014 kb on - strandat 1949.014 kb on - strandat 1949.014 kb on - strandat 1949.121 kb on + strand, within ABZR87_RS09210at 1949.122 kb on - strand, within ABZR87_RS09210at 1949.172 kb on + strand, within ABZR87_RS09210at 1949.172 kb on + strand, within ABZR87_RS09210at 1949.173 kb on - strand, within ABZR87_RS09210at 1949.173 kb on - strand, within ABZR87_RS09210at 1949.191 kb on - strand, within ABZR87_RS09210at 1949.250 kb on + strand, within ABZR87_RS09210at 1949.250 kb on + strand, within ABZR87_RS09210at 1949.250 kb on + strand, within ABZR87_RS09210at 1949.250 kb on + strand, within ABZR87_RS09210at 1949.250 kb on + strand, within ABZR87_RS09210at 1949.251 kb on - strand, within ABZR87_RS09210at 1949.311 kb on - strand, within ABZR87_RS09210at 1949.335 kb on - strand, within ABZR87_RS09210at 1949.447 kb on + strand, within ABZR87_RS09210at 1949.448 kb on - strand, within ABZR87_RS09210at 1949.490 kb on + strand, within ABZR87_RS09210at 1949.490 kb on + strand, within ABZR87_RS09210at 1949.490 kb on + strand, within ABZR87_RS09210at 1949.496 kb on + strand, within ABZR87_RS09210at 1949.496 kb on + strand, within ABZR87_RS09210at 1949.496 kb on + strand, within ABZR87_RS09210at 1949.496 kb on + strand, within ABZR87_RS09210at 1949.496 kb on + strand, within ABZR87_RS09210at 1949.497 kb on - strand, within ABZR87_RS09210at 1949.497 kb on - strand, within ABZR87_RS09210at 1949.497 kb on - strand, within ABZR87_RS09210at 1949.497 kb on - strand, within ABZR87_RS09210at 1949.497 kb on - strand, within ABZR87_RS09210at 1949.760 kb on + strandat 1949.760 kb on + strandat 1949.760 kb on + strandat 1949.760 kb on + strandat 1949.760 kb on + strandat 1949.761 kb on - strandat 1949.761 kb on - strandat 1949.828 kb on + strandat 1949.828 kb on + strandat 1949.829 kb on - strandat 1949.844 kb on + strandat 1949.916 kb on + strand, within ABZR87_RS09215at 1949.916 kb on + strand, within ABZR87_RS09215at 1949.917 kb on - strand, within ABZR87_RS09215at 1949.917 kb on - strand, within ABZR87_RS09215at 1949.918 kb on + strand, within ABZR87_RS09215at 1949.919 kb on - strand, within ABZR87_RS09215at 1949.919 kb on - strand, within ABZR87_RS09215at 1950.016 kb on + strandat 1950.017 kb on - strandat 1950.102 kb on + strand, within ABZR87_RS09220at 1950.267 kb on + strand, within ABZR87_RS09220at 1950.267 kb on + strand, within ABZR87_RS09220at 1950.283 kb on - strand, within ABZR87_RS09220at 1950.283 kb on - strand, within ABZR87_RS09220at 1950.283 kb on - strand, within ABZR87_RS09220at 1950.298 kb on - strand, within ABZR87_RS09220at 1950.298 kb on - strand, within ABZR87_RS09220at 1950.298 kb on - strand, within ABZR87_RS09220at 1950.298 kb on - strand, within ABZR87_RS09220at 1950.298 kb on - strand, within ABZR87_RS09220at 1950.345 kb on + strandat 1950.345 kb on + strandat 1950.345 kb on + strandat 1950.346 kb on - strandat 1950.346 kb on - strandat 1950.346 kb on - strandat 1950.578 kb on + strand, within ABZR87_RS09225at 1950.578 kb on + strand, within ABZR87_RS09225at 1950.579 kb on - strand, within ABZR87_RS09225at 1950.579 kb on - strand, within ABZR87_RS09225at 1950.579 kb on - strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.651 kb on + strand, within ABZR87_RS09225at 1950.652 kb on - strand, within ABZR87_RS09225at 1950.652 kb on - strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.653 kb on + strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.654 kb on - strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.657 kb on + strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.658 kb on - strand, within ABZR87_RS09225at 1950.659 kb on + strand, within ABZR87_RS09225at 1950.660 kb on - strand, within ABZR87_RS09225at 1950.908 kb on + strand, within ABZR87_RS09225at 1950.908 kb on + strand, within ABZR87_RS09225at 1950.909 kb on - strand, within ABZR87_RS09225at 1950.909 kb on - strand, within ABZR87_RS09225at 1950.909 kb on - strand, within ABZR87_RS09225at 1950.909 kb on - strand, within ABZR87_RS09225at 1950.911 kb on + strand, within ABZR87_RS09225at 1950.912 kb on - strand, within ABZR87_RS09225at 1950.912 kb on - strand, within ABZR87_RS09225at 1950.950 kb on + strandat 1950.950 kb on + strandat 1950.950 kb on + strandat 1950.950 kb on + strandat 1950.951 kb on - strandat 1950.951 kb on - strandat 1950.951 kb on - strandat 1950.951 kb on - strandat 1950.951 kb on - strandat 1950.951 kb on - strandat 1950.951 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
remove
1,949,013 + +0.6
1,949,013 + +1.4
1,949,014 - -1.4
1,949,014 - +0.2
1,949,014 - -0.5
1,949,121 + ABZR87_RS09210 0.16 -1.3
1,949,122 - ABZR87_RS09210 0.16 +0.2
1,949,172 + ABZR87_RS09210 0.23 -2.8
1,949,172 + ABZR87_RS09210 0.23 -0.6
1,949,173 - ABZR87_RS09210 0.23 +1.9
1,949,173 - ABZR87_RS09210 0.23 +1.1
1,949,191 - ABZR87_RS09210 0.25 +1.9
1,949,250 + ABZR87_RS09210 0.33 +0.4
1,949,250 + ABZR87_RS09210 0.33 -2.9
1,949,250 + ABZR87_RS09210 0.33 -3.5
1,949,250 + ABZR87_RS09210 0.33 -1.9
1,949,250 + ABZR87_RS09210 0.33 -1.6
1,949,251 - ABZR87_RS09210 0.33 -0.2
1,949,311 - ABZR87_RS09210 0.41 -3.1
1,949,335 - ABZR87_RS09210 0.45 -0.5
1,949,447 + ABZR87_RS09210 0.60 -3.3
1,949,448 - ABZR87_RS09210 0.60 -0.2
1,949,490 + ABZR87_RS09210 0.65 -2.1
1,949,490 + ABZR87_RS09210 0.65 -0.5
1,949,490 + ABZR87_RS09210 0.65 -1.2
1,949,496 + ABZR87_RS09210 0.66 +0.4
1,949,496 + ABZR87_RS09210 0.66 -3.3
1,949,496 + ABZR87_RS09210 0.66 -3.1
1,949,496 + ABZR87_RS09210 0.66 +0.7
1,949,496 + ABZR87_RS09210 0.66 +1.0
1,949,497 - ABZR87_RS09210 0.66 +1.2
1,949,497 - ABZR87_RS09210 0.66 -0.7
1,949,497 - ABZR87_RS09210 0.66 -3.2
1,949,497 - ABZR87_RS09210 0.66 -0.5
1,949,497 - ABZR87_RS09210 0.66 +1.5
1,949,760 + +0.2
1,949,760 + +0.6
1,949,760 + +1.2
1,949,760 + +2.0
1,949,760 + -5.1
1,949,761 - +0.9
1,949,761 - +0.2
1,949,828 + -2.1
1,949,828 + -3.2
1,949,829 - +1.1
1,949,844 + -1.4
1,949,916 + ABZR87_RS09215 0.39 +0.8
1,949,916 + ABZR87_RS09215 0.39 +0.3
1,949,917 - ABZR87_RS09215 0.41 +0.0
1,949,917 - ABZR87_RS09215 0.41 +0.6
1,949,918 + ABZR87_RS09215 0.42 +1.8
1,949,919 - ABZR87_RS09215 0.43 -3.0
1,949,919 - ABZR87_RS09215 0.43 +3.8
1,950,016 + -4.0
1,950,017 - +2.2
1,950,102 + ABZR87_RS09220 0.21 -1.7
1,950,267 + ABZR87_RS09220 0.68 +0.2
1,950,267 + ABZR87_RS09220 0.68 -1.8
1,950,283 - ABZR87_RS09220 0.73 -2.9
1,950,283 - ABZR87_RS09220 0.73 -0.2
1,950,283 - ABZR87_RS09220 0.73 -0.1
1,950,298 - ABZR87_RS09220 0.77 -1.5
1,950,298 - ABZR87_RS09220 0.77 +0.3
1,950,298 - ABZR87_RS09220 0.77 +0.0
1,950,298 - ABZR87_RS09220 0.77 -2.8
1,950,298 - ABZR87_RS09220 0.77 -0.6
1,950,345 + -3.4
1,950,345 + -1.5
1,950,345 + -1.1
1,950,346 - -2.0
1,950,346 - +0.6
1,950,346 - +0.9
1,950,578 + ABZR87_RS09225 0.28 -0.7
1,950,578 + ABZR87_RS09225 0.28 +0.4
1,950,579 - ABZR87_RS09225 0.29 -3.5
1,950,579 - ABZR87_RS09225 0.29 +0.4
1,950,579 - ABZR87_RS09225 0.29 -3.6
1,950,651 + ABZR87_RS09225 0.42 -0.9
1,950,651 + ABZR87_RS09225 0.42 -0.6
1,950,651 + ABZR87_RS09225 0.42 -0.3
1,950,651 + ABZR87_RS09225 0.42 +0.4
1,950,651 + ABZR87_RS09225 0.42 +0.3
1,950,651 + ABZR87_RS09225 0.42 -3.2
1,950,651 + ABZR87_RS09225 0.42 -1.0
1,950,652 - ABZR87_RS09225 0.42 -0.3
1,950,652 - ABZR87_RS09225 0.42 +3.6
1,950,653 + ABZR87_RS09225 0.42 +0.9
1,950,653 + ABZR87_RS09225 0.42 -3.2
1,950,653 + ABZR87_RS09225 0.42 +0.1
1,950,653 + ABZR87_RS09225 0.42 -3.2
1,950,653 + ABZR87_RS09225 0.42 +1.8
1,950,653 + ABZR87_RS09225 0.42 -1.0
1,950,653 + ABZR87_RS09225 0.42 +0.7
1,950,653 + ABZR87_RS09225 0.42 -0.4
1,950,653 + ABZR87_RS09225 0.42 +2.2
1,950,653 + ABZR87_RS09225 0.42 +0.6
1,950,653 + ABZR87_RS09225 0.42 -0.2
1,950,653 + ABZR87_RS09225 0.42 +0.3
1,950,653 + ABZR87_RS09225 0.42 -2.8
1,950,653 + ABZR87_RS09225 0.42 -2.8
1,950,653 + ABZR87_RS09225 0.42 -2.0
1,950,653 + ABZR87_RS09225 0.42 +2.5
1,950,653 + ABZR87_RS09225 0.42 -3.2
1,950,653 + ABZR87_RS09225 0.42 -3.5
1,950,653 + ABZR87_RS09225 0.42 -1.4
1,950,653 + ABZR87_RS09225 0.42 -1.5
1,950,654 - ABZR87_RS09225 0.42 +1.2
1,950,654 - ABZR87_RS09225 0.42 -2.5
1,950,654 - ABZR87_RS09225 0.42 +1.1
1,950,654 - ABZR87_RS09225 0.42 +2.0
1,950,654 - ABZR87_RS09225 0.42 -0.6
1,950,654 - ABZR87_RS09225 0.42 +0.6
1,950,654 - ABZR87_RS09225 0.42 +1.5
1,950,654 - ABZR87_RS09225 0.42 -1.6
1,950,654 - ABZR87_RS09225 0.42 -0.1
1,950,654 - ABZR87_RS09225 0.42 -0.7
1,950,657 + ABZR87_RS09225 0.43 +1.1
1,950,657 + ABZR87_RS09225 0.43 -2.8
1,950,657 + ABZR87_RS09225 0.43 -3.6
1,950,657 + ABZR87_RS09225 0.43 +0.6
1,950,657 + ABZR87_RS09225 0.43 -0.1
1,950,657 + ABZR87_RS09225 0.43 -1.3
1,950,657 + ABZR87_RS09225 0.43 -1.1
1,950,657 + ABZR87_RS09225 0.43 -3.5
1,950,657 + ABZR87_RS09225 0.43 +1.5
1,950,657 + ABZR87_RS09225 0.43 -0.9
1,950,657 + ABZR87_RS09225 0.43 +0.4
1,950,657 + ABZR87_RS09225 0.43 -0.5
1,950,657 + ABZR87_RS09225 0.43 -0.9
1,950,657 + ABZR87_RS09225 0.43 -2.8
1,950,657 + ABZR87_RS09225 0.43 -1.7
1,950,657 + ABZR87_RS09225 0.43 -3.9
1,950,658 - ABZR87_RS09225 0.43 -0.2
1,950,658 - ABZR87_RS09225 0.43 +0.9
1,950,658 - ABZR87_RS09225 0.43 -0.5
1,950,658 - ABZR87_RS09225 0.43 -3.2
1,950,658 - ABZR87_RS09225 0.43 -2.9
1,950,658 - ABZR87_RS09225 0.43 -0.5
1,950,658 - ABZR87_RS09225 0.43 -1.0
1,950,658 - ABZR87_RS09225 0.43 +3.2
1,950,658 - ABZR87_RS09225 0.43 +0.9
1,950,658 - ABZR87_RS09225 0.43 -3.5
1,950,658 - ABZR87_RS09225 0.43 -0.8
1,950,658 - ABZR87_RS09225 0.43 -2.7
1,950,658 - ABZR87_RS09225 0.43 -3.2
1,950,658 - ABZR87_RS09225 0.43 +1.6
1,950,658 - ABZR87_RS09225 0.43 -0.5
1,950,658 - ABZR87_RS09225 0.43 -3.5
1,950,658 - ABZR87_RS09225 0.43 -0.7
1,950,658 - ABZR87_RS09225 0.43 -0.6
1,950,658 - ABZR87_RS09225 0.43 -3.2
1,950,659 + ABZR87_RS09225 0.43 -0.3
1,950,660 - ABZR87_RS09225 0.43 +1.4
1,950,908 + ABZR87_RS09225 0.88 -1.8
1,950,908 + ABZR87_RS09225 0.88 +0.4
1,950,909 - ABZR87_RS09225 0.88 +0.2
1,950,909 - ABZR87_RS09225 0.88 -2.6
1,950,909 - ABZR87_RS09225 0.88 -0.2
1,950,909 - ABZR87_RS09225 0.88 +0.5
1,950,911 + ABZR87_RS09225 0.89 -2.5
1,950,912 - ABZR87_RS09225 0.89 +0.5
1,950,912 - ABZR87_RS09225 0.89 -0.4
1,950,950 + -0.6
1,950,950 + +2.0
1,950,950 + -3.1
1,950,950 + -2.4
1,950,951 - +1.9
1,950,951 - +0.2
1,950,951 - +1.2
1,950,951 - -0.7
1,950,951 - +1.0
1,950,951 - -2.4
1,950,951 - +0.0

Or see this region's nucleotide sequence