Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07050 and ABZR87_RS07055 are separated by 346 nucleotides ABZR87_RS07055 and ABZR87_RS07060 are separated by 50 nucleotides ABZR87_RS07060 and ABZR87_RS07065 are separated by 96 nucleotides ABZR87_RS07065 and ABZR87_RS07070 are separated by 30 nucleotides
ABZR87_RS07050: ABZR87_RS07050 - PTS IIA-like nitrogen regulatory protein PtsN, at 1,489,097 to 1,489,552
_RS07050
ABZR87_RS07055: ABZR87_RS07055 - ribosome-associated translation inhibitor RaiA, at 1,489,899 to 1,490,252
_RS07055
ABZR87_RS07060: ABZR87_RS07060 - RNA polymerase factor sigma-54, at 1,490,303 to 1,491,814
_RS07060
ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699
_RS07065
ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317
_RS07070
Position (kb) 1490
1491
1492 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1489.478 kb on + strand, within ABZR87_RS07050 at 1489.496 kb on + strand, within ABZR87_RS07050 at 1489.497 kb on - strand, within ABZR87_RS07050 at 1489.617 kb on - strand at 1489.617 kb on - strand at 1489.618 kb on + strand at 1489.618 kb on + strand at 1489.618 kb on + strand at 1489.618 kb on + strand at 1489.618 kb on + strand at 1489.618 kb on + strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.619 kb on - strand at 1489.784 kb on - strand at 1489.852 kb on - strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.900 kb on + strand at 1489.901 kb on - strand at 1489.901 kb on - strand at 1489.901 kb on - strand at 1489.901 kb on - strand at 1489.901 kb on - strand at 1489.975 kb on + strand, within ABZR87_RS07055 at 1489.975 kb on + strand, within ABZR87_RS07055 at 1489.975 kb on + strand, within ABZR87_RS07055 at 1489.975 kb on + strand, within ABZR87_RS07055 at 1489.975 kb on + strand, within ABZR87_RS07055 at 1489.975 kb on + strand, within ABZR87_RS07055 at 1489.976 kb on - strand, within ABZR87_RS07055 at 1489.976 kb on - strand, within ABZR87_RS07055 at 1489.976 kb on - strand, within ABZR87_RS07055 at 1489.976 kb on - strand, within ABZR87_RS07055 at 1490.010 kb on + strand, within ABZR87_RS07055 at 1490.011 kb on - strand, within ABZR87_RS07055 at 1490.011 kb on - strand, within ABZR87_RS07055 at 1490.026 kb on + strand, within ABZR87_RS07055 at 1490.027 kb on - strand, within ABZR87_RS07055 at 1490.027 kb on - strand, within ABZR87_RS07055 at 1490.027 kb on - strand, within ABZR87_RS07055 at 1490.027 kb on - strand, within ABZR87_RS07055 at 1490.063 kb on + strand, within ABZR87_RS07055 at 1490.063 kb on + strand, within ABZR87_RS07055 at 1490.063 kb on + strand, within ABZR87_RS07055 at 1490.064 kb on - strand, within ABZR87_RS07055 at 1490.064 kb on - strand, within ABZR87_RS07055 at 1490.064 kb on - strand, within ABZR87_RS07055 at 1490.064 kb on - strand, within ABZR87_RS07055 at 1490.186 kb on + strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.198 kb on - strand, within ABZR87_RS07055 at 1490.252 kb on + strand at 1490.252 kb on + strand at 1490.253 kb on - strand at 1490.304 kb on + strand at 1490.305 kb on - strand at 1490.305 kb on - strand at 1490.305 kb on - strand at 1490.306 kb on + strand at 1490.307 kb on - strand at 1490.307 kb on - strand at 1490.352 kb on + strand at 1490.353 kb on - strand at 1490.416 kb on + strand at 1490.450 kb on + strand at 1490.451 kb on - strand at 1490.451 kb on - strand at 1490.451 kb on - strand at 1490.451 kb on - strand at 1490.451 kb on - strand at 1490.483 kb on - strand, within ABZR87_RS07060 at 1490.513 kb on + strand, within ABZR87_RS07060 at 1490.513 kb on + strand, within ABZR87_RS07060 at 1490.513 kb on + strand, within ABZR87_RS07060 at 1490.513 kb on + strand, within ABZR87_RS07060 at 1490.514 kb on - strand, within ABZR87_RS07060 at 1490.514 kb on - strand, within ABZR87_RS07060 at 1490.514 kb on - strand, within ABZR87_RS07060 at 1490.514 kb on - strand, within ABZR87_RS07060 at 1490.533 kb on - strand, within ABZR87_RS07060 at 1490.533 kb on - strand, within ABZR87_RS07060 at 1490.533 kb on - strand, within ABZR87_RS07060 at 1490.533 kb on - strand, within ABZR87_RS07060 at 1490.533 kb on - strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.568 kb on + strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.569 kb on - strand, within ABZR87_RS07060 at 1490.607 kb on - strand, within ABZR87_RS07060 at 1490.607 kb on - strand, within ABZR87_RS07060 at 1490.607 kb on - strand, within ABZR87_RS07060 at 1490.607 kb on - strand, within ABZR87_RS07060 at 1490.617 kb on + strand, within ABZR87_RS07060 at 1490.617 kb on + strand, within ABZR87_RS07060 at 1490.617 kb on + strand, within ABZR87_RS07060 at 1490.617 kb on + strand, within ABZR87_RS07060 at 1490.617 kb on + strand, within ABZR87_RS07060 at 1490.618 kb on - strand, within ABZR87_RS07060 at 1490.618 kb on - strand, within ABZR87_RS07060 at 1490.625 kb on - strand, within ABZR87_RS07060 at 1490.625 kb on - strand, within ABZR87_RS07060 at 1490.720 kb on - strand, within ABZR87_RS07060 at 1490.720 kb on - strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.826 kb on + strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1490.827 kb on - strand, within ABZR87_RS07060 at 1491.039 kb on + strand, within ABZR87_RS07060 at 1491.039 kb on + strand, within ABZR87_RS07060 at 1491.273 kb on + strand, within ABZR87_RS07060 at 1491.273 kb on + strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.274 kb on - strand, within ABZR87_RS07060 at 1491.276 kb on - strand, within ABZR87_RS07060 at 1491.449 kb on + strand, within ABZR87_RS07060 at 1491.450 kb on - strand, within ABZR87_RS07060 at 1491.450 kb on - strand, within ABZR87_RS07060 at 1491.478 kb on - strand, within ABZR87_RS07060 at 1491.519 kb on + strand, within ABZR87_RS07060 at 1491.520 kb on - strand, within ABZR87_RS07060 at 1491.821 kb on + strand at 1491.822 kb on - strand at 1491.822 kb on - strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.826 kb on + strand at 1491.827 kb on - strand at 1491.888 kb on - strand at 1491.894 kb on + strand at 1491.894 kb on + strand at 1491.894 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.912 kb on + strand at 1491.913 kb on - strand at 1491.913 kb on - strand at 1492.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 1,489,478 + ABZR87_RS07050 0.84 -0.6 1,489,496 + ABZR87_RS07050 0.88 -0.5 1,489,497 - ABZR87_RS07050 0.88 -2.5 1,489,617 - -3.2 1,489,617 - +1.0 1,489,618 + -4.8 1,489,618 + +1.1 1,489,618 + -0.4 1,489,618 + -1.2 1,489,618 + +0.5 1,489,618 + +1.2 1,489,619 - -0.2 1,489,619 - +1.3 1,489,619 - -1.0 1,489,619 - +2.8 1,489,619 - +1.7 1,489,619 - +0.5 1,489,619 - +0.8 1,489,619 - +0.4 1,489,619 - +0.4 1,489,619 - +2.2 1,489,619 - -1.4 1,489,784 - -0.2 1,489,852 - +2.5 1,489,900 + -2.7 1,489,900 + +1.1 1,489,900 + +0.8 1,489,900 + -3.1 1,489,900 + +0.1 1,489,900 + +1.2 1,489,900 + +0.7 1,489,900 + -2.1 1,489,900 + -1.0 1,489,901 - +1.8 1,489,901 - +0.3 1,489,901 - +0.4 1,489,901 - +1.2 1,489,901 - -1.3 1,489,975 + ABZR87_RS07055 0.21 -4.5 1,489,975 + ABZR87_RS07055 0.21 -4.5 1,489,975 + ABZR87_RS07055 0.21 -4.1 1,489,975 + ABZR87_RS07055 0.21 -3.9 1,489,975 + ABZR87_RS07055 0.21 -3.5 1,489,975 + ABZR87_RS07055 0.21 -0.2 1,489,976 - ABZR87_RS07055 0.22 -3.5 1,489,976 - ABZR87_RS07055 0.22 -3.5 1,489,976 - ABZR87_RS07055 0.22 -2.3 1,489,976 - ABZR87_RS07055 0.22 -4.5 1,490,010 + ABZR87_RS07055 0.31 -0.5 1,490,011 - ABZR87_RS07055 0.32 -4.0 1,490,011 - ABZR87_RS07055 0.32 -3.0 1,490,026 + ABZR87_RS07055 0.36 +0.1 1,490,027 - ABZR87_RS07055 0.36 -2.8 1,490,027 - ABZR87_RS07055 0.36 -0.6 1,490,027 - ABZR87_RS07055 0.36 -3.3 1,490,027 - ABZR87_RS07055 0.36 -2.4 1,490,063 + ABZR87_RS07055 0.46 -2.0 1,490,063 + ABZR87_RS07055 0.46 +0.2 1,490,063 + ABZR87_RS07055 0.46 -3.0 1,490,064 - ABZR87_RS07055 0.47 -0.8 1,490,064 - ABZR87_RS07055 0.47 -2.5 1,490,064 - ABZR87_RS07055 0.47 +0.7 1,490,064 - ABZR87_RS07055 0.47 -4.1 1,490,186 + ABZR87_RS07055 0.81 -2.2 1,490,198 - ABZR87_RS07055 0.84 -1.7 1,490,198 - ABZR87_RS07055 0.84 -2.8 1,490,198 - ABZR87_RS07055 0.84 -0.3 1,490,198 - ABZR87_RS07055 0.84 -0.8 1,490,198 - ABZR87_RS07055 0.84 -4.3 1,490,198 - ABZR87_RS07055 0.84 -3.5 1,490,198 - ABZR87_RS07055 0.84 -0.9 1,490,252 + -3.7 1,490,252 + -4.6 1,490,253 - +1.2 1,490,304 + -5.4 1,490,305 - -1.2 1,490,305 - -0.0 1,490,305 - +0.6 1,490,306 + -5.3 1,490,307 - +1.7 1,490,307 - +0.2 1,490,352 + -1.4 1,490,353 - +0.9 1,490,416 + -1.9 1,490,450 + -0.3 1,490,451 - +1.9 1,490,451 - -1.9 1,490,451 - +1.4 1,490,451 - +1.2 1,490,451 - +0.1 1,490,483 - ABZR87_RS07060 0.12 +2.5 1,490,513 + ABZR87_RS07060 0.14 +0.5 1,490,513 + ABZR87_RS07060 0.14 -3.7 1,490,513 + ABZR87_RS07060 0.14 +0.5 1,490,513 + ABZR87_RS07060 0.14 -3.6 1,490,514 - ABZR87_RS07060 0.14 +2.3 1,490,514 - ABZR87_RS07060 0.14 +1.3 1,490,514 - ABZR87_RS07060 0.14 -0.8 1,490,514 - ABZR87_RS07060 0.14 +0.9 1,490,533 - ABZR87_RS07060 0.15 +1.0 1,490,533 - ABZR87_RS07060 0.15 +0.7 1,490,533 - ABZR87_RS07060 0.15 +1.1 1,490,533 - ABZR87_RS07060 0.15 -2.7 1,490,533 - ABZR87_RS07060 0.15 -1.8 1,490,568 + ABZR87_RS07060 0.18 -1.5 1,490,568 + ABZR87_RS07060 0.18 +0.5 1,490,568 + ABZR87_RS07060 0.18 +0.2 1,490,568 + ABZR87_RS07060 0.18 +0.3 1,490,568 + ABZR87_RS07060 0.18 -1.4 1,490,568 + ABZR87_RS07060 0.18 +0.4 1,490,568 + ABZR87_RS07060 0.18 -0.8 1,490,568 + ABZR87_RS07060 0.18 -0.1 1,490,568 + ABZR87_RS07060 0.18 -0.1 1,490,569 - ABZR87_RS07060 0.18 +0.9 1,490,569 - ABZR87_RS07060 0.18 +0.8 1,490,569 - ABZR87_RS07060 0.18 +1.6 1,490,569 - ABZR87_RS07060 0.18 +1.7 1,490,569 - ABZR87_RS07060 0.18 +0.1 1,490,569 - ABZR87_RS07060 0.18 -2.7 1,490,569 - ABZR87_RS07060 0.18 -2.8 1,490,569 - ABZR87_RS07060 0.18 -2.0 1,490,607 - ABZR87_RS07060 0.20 +2.0 1,490,607 - ABZR87_RS07060 0.20 +1.4 1,490,607 - ABZR87_RS07060 0.20 -1.9 1,490,607 - ABZR87_RS07060 0.20 +1.1 1,490,617 + ABZR87_RS07060 0.21 +0.1 1,490,617 + ABZR87_RS07060 0.21 +0.4 1,490,617 + ABZR87_RS07060 0.21 +0.4 1,490,617 + ABZR87_RS07060 0.21 -2.4 1,490,617 + ABZR87_RS07060 0.21 -0.6 1,490,618 - ABZR87_RS07060 0.21 -4.3 1,490,618 - ABZR87_RS07060 0.21 +2.3 1,490,625 - ABZR87_RS07060 0.21 +3.9 1,490,625 - ABZR87_RS07060 0.21 -0.5 1,490,720 - ABZR87_RS07060 0.28 +2.5 1,490,720 - ABZR87_RS07060 0.28 +1.2 1,490,826 + ABZR87_RS07060 0.35 +0.8 1,490,826 + ABZR87_RS07060 0.35 +2.8 1,490,826 + ABZR87_RS07060 0.35 +1.7 1,490,826 + ABZR87_RS07060 0.35 +0.8 1,490,826 + ABZR87_RS07060 0.35 +1.7 1,490,826 + ABZR87_RS07060 0.35 +1.5 1,490,826 + ABZR87_RS07060 0.35 +1.0 1,490,826 + ABZR87_RS07060 0.35 +0.5 1,490,826 + ABZR87_RS07060 0.35 +0.5 1,490,827 - ABZR87_RS07060 0.35 +2.0 1,490,827 - ABZR87_RS07060 0.35 +1.6 1,490,827 - ABZR87_RS07060 0.35 -0.3 1,490,827 - ABZR87_RS07060 0.35 +1.9 1,490,827 - ABZR87_RS07060 0.35 -1.6 1,490,827 - ABZR87_RS07060 0.35 +1.3 1,490,827 - ABZR87_RS07060 0.35 +3.8 1,490,827 - ABZR87_RS07060 0.35 -0.3 1,490,827 - ABZR87_RS07060 0.35 -3.6 1,490,827 - ABZR87_RS07060 0.35 +2.4 1,491,039 + ABZR87_RS07060 0.49 +1.1 1,491,039 + ABZR87_RS07060 0.49 +1.5 1,491,273 + ABZR87_RS07060 0.64 +1.2 1,491,273 + ABZR87_RS07060 0.64 -0.4 1,491,274 - ABZR87_RS07060 0.64 +1.7 1,491,274 - ABZR87_RS07060 0.64 +2.0 1,491,274 - ABZR87_RS07060 0.64 -2.2 1,491,274 - ABZR87_RS07060 0.64 -1.7 1,491,274 - ABZR87_RS07060 0.64 -1.3 1,491,274 - ABZR87_RS07060 0.64 +1.2 1,491,274 - ABZR87_RS07060 0.64 +2.4 1,491,276 - ABZR87_RS07060 0.64 +0.9 1,491,449 + ABZR87_RS07060 0.76 -3.6 1,491,450 - ABZR87_RS07060 0.76 +2.1 1,491,450 - ABZR87_RS07060 0.76 -1.0 1,491,478 - ABZR87_RS07060 0.78 +1.5 1,491,519 + ABZR87_RS07060 0.80 +2.2 1,491,520 - ABZR87_RS07060 0.80 +1.5 1,491,821 + -3.2 1,491,822 - -3.1 1,491,822 - -0.5 1,491,826 + +1.7 1,491,826 + -2.8 1,491,826 + -3.8 1,491,826 + +2.4 1,491,826 + +2.7 1,491,826 + +0.8 1,491,826 + +1.4 1,491,826 + -0.4 1,491,827 - +0.5 1,491,888 - +1.7 1,491,894 + +1.4 1,491,894 + +0.6 1,491,894 + -2.6 1,491,912 + +1.6 1,491,912 + +0.3 1,491,912 + -0.8 1,491,912 + +1.1 1,491,912 + -3.9 1,491,913 - +1.2 1,491,913 - +0.4 1,492,700 - +1.5
Or see this region's nucleotide sequence