Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06855

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 1; outgrowth in LB
1,449,627	+		ABZR87_RS06845	0.73	-2.9
1,449,627	+		ABZR87_RS06845	0.73	-0.3
1,449,628	-		ABZR87_RS06845	0.73	-3.1
1,449,628	-		ABZR87_RS06845	0.73	-1.7
1,449,670	-		ABZR87_RS06845	0.77	-2.6
1,449,684	+		ABZR87_RS06845	0.79	-2.9
1,449,685	-		ABZR87_RS06845	0.79	-0.5
1,449,685	-		ABZR87_RS06845	0.79	-3.3
1,449,686	+		ABZR87_RS06845	0.79	-3.8
1,449,687	-		ABZR87_RS06845	0.79	-2.4
1,449,687	-		ABZR87_RS06845	0.79	-3.3
1,449,690	+		ABZR87_RS06845	0.79	+0.4
1,449,690	+		ABZR87_RS06845	0.79	-1.7
1,449,690	+		ABZR87_RS06845	0.79	-0.5
1,449,690	+		ABZR87_RS06845	0.79	-3.2
1,449,691	-		ABZR87_RS06845	0.79	-2.0
1,449,691	-		ABZR87_RS06845	0.79	+3.1
1,449,733	-		ABZR87_RS06845	0.84	-2.0
1,449,733	-		ABZR87_RS06845	0.84	-2.9
1,449,747	+		ABZR87_RS06845	0.85	-3.4
1,449,748	-		ABZR87_RS06845	0.85	-4.3
1,449,748	-		ABZR87_RS06845	0.85	-1.7
1,449,757	-		ABZR87_RS06845	0.86	-1.9
1,449,801	+				-3.5
1,449,801	+				+1.6
1,449,801	+				-1.4
1,449,802	-				-3.6
1,449,840	+				-0.5
1,449,840	+				-2.0
1,449,841	-				-2.4
1,449,841	-				-4.0
1,450,167	+		ABZR87_RS06850	0.35	-0.9
1,450,167	+		ABZR87_RS06850	0.35	-1.7
1,450,311	+		ABZR87_RS06850	0.59	-1.2
1,450,311	+		ABZR87_RS06850	0.59	+0.4
1,450,311	+		ABZR87_RS06850	0.59	-1.2
1,450,311	+		ABZR87_RS06850	0.59	-0.8
1,450,311	+		ABZR87_RS06850	0.59	-1.6
1,450,311	+		ABZR87_RS06850	0.59	+0.8
1,450,312	-		ABZR87_RS06850	0.59	-0.9
1,450,312	-		ABZR87_RS06850	0.59	+1.2
1,450,312	-		ABZR87_RS06850	0.59	+0.8
1,450,312	-		ABZR87_RS06850	0.59	-1.1
1,450,401	+		ABZR87_RS06850	0.74	-2.6
1,450,401	+		ABZR87_RS06850	0.74	-0.3
1,450,401	+		ABZR87_RS06850	0.74	-1.6
1,450,402	-		ABZR87_RS06850	0.74	-3.1
1,450,402	-		ABZR87_RS06850	0.74	+0.7
1,450,402	-		ABZR87_RS06850	0.74	+0.3
1,450,402	-		ABZR87_RS06850	0.74	-0.7
1,450,402	-		ABZR87_RS06850	0.74	-1.1
1,450,434	+		ABZR87_RS06850	0.79	-1.8
1,450,434	+		ABZR87_RS06850	0.79	-1.8
1,450,434	+		ABZR87_RS06850	0.79	-2.1
1,450,434	+		ABZR87_RS06850	0.79	-2.0
1,450,434	+		ABZR87_RS06850	0.79	-3.1
1,450,435	-		ABZR87_RS06850	0.79	-2.8
1,450,435	-		ABZR87_RS06850	0.79	-1.0
1,450,435	-		ABZR87_RS06850	0.79	+0.9
1,450,435	-		ABZR87_RS06850	0.79	-1.5
1,450,435	-		ABZR87_RS06850	0.79	-2.8
1,450,461	+		ABZR87_RS06850	0.84	-0.4
1,450,461	+		ABZR87_RS06850	0.84	+3.7
1,450,461	+		ABZR87_RS06850	0.84	-0.2
1,450,461	+		ABZR87_RS06850	0.84	-3.7
1,450,461	+		ABZR87_RS06850	0.84	-2.9
1,450,461	+		ABZR87_RS06850	0.84	-1.8
1,450,461	+		ABZR87_RS06850	0.84	-3.0
1,450,461	+		ABZR87_RS06850	0.84	+1.1
1,450,461	+		ABZR87_RS06850	0.84	+1.8
1,450,462	-		ABZR87_RS06850	0.84	-0.6
1,450,462	-		ABZR87_RS06850	0.84	+0.2
1,450,462	-		ABZR87_RS06850	0.84	+0.9
1,450,462	-		ABZR87_RS06850	0.84	-3.5
1,450,627	+				-1.9
1,450,628	-				-0.2
1,451,149	+		ABZR87_RS06855	0.56	+0.1
1,451,294	-		ABZR87_RS06855	0.72	+0.3
1,451,337	+		ABZR87_RS06855	0.76	-0.2
1,451,439	-		ABZR87_RS06855	0.87	+2.1
1,451,441	-		ABZR87_RS06855	0.88	-3.5
1,451,441	-		ABZR87_RS06855	0.88	-4.2
1,451,441	-		ABZR87_RS06855	0.88	+0.1
1,451,441	-		ABZR87_RS06855	0.88	+1.1
1,451,441	-		ABZR87_RS06855	0.88	-2.5
1,451,600	+				-4.2
1,451,601	-				+1.1
1,451,623	+				-1.6
1,451,623	+				+1.6
1,451,623	+				+1.4
1,451,623	+				-1.2
1,451,624	-				-3.2
1,451,624	-				-2.9
1,451,624	-				+0.3
1,451,626	+				-3.9
1,451,626	+				-0.1
1,451,626	+				+0.7
1,451,626	+				-1.8
1,451,627	-				+0.5
1,451,648	+				-0.4
1,451,680	-				+0.3
1,451,704	+				+0.1
1,451,704	+				+1.3
1,451,704	+				-1.2
1,451,705	-				-2.7
1,451,706	+				-1.9
1,451,706	+				+0.6
1,451,706	+				+0.4
1,451,707	-				-0.6
1,451,725	+				+0.4
1,451,725	+				+1.4
1,451,726	-				+1.2
1,451,726	-				-2.4
1,451,726	-				+1.0
1,451,726	-				-3.7
1,451,726	-				+1.3
1,451,770	-				-0.0
1,451,770	-				-1.4
1,451,792	+				+0.7
1,451,793	-				-0.6
1,451,793	-				-0.4
1,451,815	+				-0.6
1,451,816	-				+0.6
1,451,816	-				-2.2
1,451,816	-				-0.2
1,452,017	+				+0.2
1,452,019	-				+1.0
1,452,092	+		ABZR87_RS06860	0.12	-2.2
1,452,092	+		ABZR87_RS06860	0.12	-0.7
1,452,092	+		ABZR87_RS06860	0.12	-1.0
1,452,092	+		ABZR87_RS06860	0.12	+0.2
1,452,092	+		ABZR87_RS06860	0.12	+0.1
1,452,093	-		ABZR87_RS06860	0.12	-1.3
1,452,093	-		ABZR87_RS06860	0.12	-2.1
1,452,093	-		ABZR87_RS06860	0.12	-2.6
1,452,093	-		ABZR87_RS06860	0.12	-3.3
1,452,131	+		ABZR87_RS06860	0.13	-2.3
1,452,131	+		ABZR87_RS06860	0.13	+0.4
1,452,131	+		ABZR87_RS06860	0.13	-0.5
1,452,132	-		ABZR87_RS06860	0.13	+1.5
1,452,132	-		ABZR87_RS06860	0.13	+0.7
1,452,194	+		ABZR87_RS06860	0.15	+0.6
1,452,194	+		ABZR87_RS06860	0.15	+2.5
1,452,299	+		ABZR87_RS06860	0.19	-3.8
1,452,299	+		ABZR87_RS06860	0.19	+1.4
1,452,299	+		ABZR87_RS06860	0.19	+1.0
1,452,299	+		ABZR87_RS06860	0.19	-1.1
1,452,299	+		ABZR87_RS06860	0.19	+0.7
1,452,300	-		ABZR87_RS06860	0.19	+0.2
1,452,300	-		ABZR87_RS06860	0.19	-1.4
1,452,300	-		ABZR87_RS06860	0.19	-2.8
1,452,300	-		ABZR87_RS06860	0.19	-1.2
1,452,300	-		ABZR87_RS06860	0.19	+0.2
1,452,300	-		ABZR87_RS06860	0.19	-0.2
1,452,300	-		ABZR87_RS06860	0.19	-1.5
1,452,458	+		ABZR87_RS06860	0.24	-4.0
1,452,458	+		ABZR87_RS06860	0.24	-1.6
1,452,458	+		ABZR87_RS06860	0.24	-2.5
1,452,458	+		ABZR87_RS06860	0.24	-3.8
1,452,458	+		ABZR87_RS06860	0.24	-0.2
1,452,476	+		ABZR87_RS06860	0.25	+0.5
1,452,476	+		ABZR87_RS06860	0.25	+1.0
1,452,476	+		ABZR87_RS06860	0.25	+0.5
1,452,476	+		ABZR87_RS06860	0.25	+0.4
1,452,476	+		ABZR87_RS06860	0.25	-0.0
1,452,476	+		ABZR87_RS06860	0.25	-3.7
1,452,477	-		ABZR87_RS06860	0.25	-0.5
1,452,477	-		ABZR87_RS06860	0.25	-0.4
1,452,477	-		ABZR87_RS06860	0.25	-0.5
1,452,477	-		ABZR87_RS06860	0.25	+1.2
1,452,477	-		ABZR87_RS06860	0.25	+0.5